BAC Information

Click to search

BAC

Clone NameB6Ng01-110P11
Chromosome8 (Build37)
Map Location 24,548,951 - 24,550,018
singlet/doubletsinglet
Overlap geneSfrp1
Upstream geneAI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7
Downstream geneLOC100040931, Zmat4, 1810011O10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P11.bB6Ng01-110P11.g
ACCDH917437DH917438
length1,0521,145
definitionDH917437|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P11, 5' end.DH917438|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtagctaatctcacctctaccccagcagcggccaaggggtcta
ttctatatggcagacttgcatccaacagaggaaagggatggagtgctgga
gatgtcacagcatttggtgagagactatgtggttacaaagtgggagcctc
acatcttggaacatggtccagactggtgagatggctcaacaggtaaaggt
gcttgctgccaagtctgataacttgagttcactccctggatcccaaatca
tgaaaagaaaaaactcccaagacttgtcctctgacctctacacttactca
aatacataaatacatacataaagaaaatgtgattaaattgtttaaaagac
actgatttccattccaagtcagaaggttgaatggtctctgtctctgtttc
ctctctctttgaaaaaaatctagtagctcaaaagaacagaccatgttttg
ttttgtcttccttcctttaaagtctcaatgagacccaccaaactgcagac
ttacctaccatacaaggagcgcttgactccaaacttctaaaattcaaatg
tccaaagaattgatgggattttgaggtaagtctaaatgtgaatgatagag
accaaaatataaacgataaacggaaaaagaaaaaaggttttcagagataa
tagagagaatgtagaaaggcataagcaatctttaaaatgtgataatatta
tgtacgttactatatcacatcacaagaacaggaaaccattacaggaaaag
tgaacaaaagaggagtatgttcaatacatgtgttttagacaggttaaagg
catttcctgaaatcataaactaagtgacagatagagagaggagacaggaa
aagataaaatagactatcaagccacagtctctatatccaaataaagggaa
atacagaaaacataacaaagtgggggagggggaatcaaggaaataatcca
gtcaggtttcagatgaagaacataaactctcgatacacagttccagctca
aagaatcatgacatttagaacattagaaaaatgaaaggaaaaaaaagaca
tt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
atatgctggcgtggatgtggagaaagaggaacaatcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacagaatatgtactcactgataagtggatattagcccaaaacc
taggatatccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactttgcccctccttagaagtgggaa
caaaacacccttagaaggaggtacagagacaaagtttggagctgagataa
aaagatggaccatgtagagactgccatatccgggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagtttatgctgaaag
gaccctgatatagctgtctctcgtcaggagtatgcctgggcctagcaaac
attagaagtggatgctcacagtcgctatgggatggatcacatggccccaa
tgaggagctagaagaaagtacccaggagctaagggatctgcacccctata
gtgaacaaatatgaactaccataccccgagctctgactctagctgcaata
tgtatcaaagatgcctagccgcatcatgggaaagagcatggaaccactta
atgccagtacagacgcaggccaaaaaggattcagctatgggatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24548951_24550018
seq2: B6Ng01-110P11.b_43_1094 (reverse)

seq1  AATGTCTTTTTTTTCCTTTTCATTTTTCTTATGTTTCTAAATGTCATGAT  50
      |||||||||||||||| |||||||||||| ||| ||||||||||||||||
seq2  AATGTCTTTTTTTTCC-TTTCATTTTTCTAATG-TTCTAAATGTCATGAT  48

seq1  TCTTTGAGCTGGGAACTGTGTAATCTGAGAGTTTATGTTCTTCATCTGAA  100
      |||||||||| |||||||||| ||| ||||||||||||||||||||||  
seq2  TCTTTGAGCT-GGAACTGTGT-ATC-GAGAGTTTATGTTCTTCATCTG--  93

seq1  AAACCTGACTGGGATTATTTCCTTGATTCCCCCCTCCCCCACTTTGTTAT  150
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AAACCTGACT-GGATTATTTCCTTGATT-CCCCCTCCCCCACTTTGTTAT  141

seq1  GTTTTCTGTAATTCCCTTTATTTGGATATAGAGACTGTTGGCTTGATAGT  200
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  GTTTTCTGTATTTCCCTTTATTTGGATATAGAGACTG-TGGCTTGATAGT  190

seq1  CTATTTTTATCTTTTTCCTGTCTCCTCTCTCTCTCTGTCACTTTGTTTAT  250
      ||| ||||||| |||||||||||||||||||| |||||||||| ||||||
seq2  CTA-TTTTATC-TTTTCCTGTCTCCTCTCTCTATCTGTCACTTAGTTTAT  238

seq1  GATTTCAGGAAATGCCTTTAAACCTGTCTTAAAACACATGTATTGAACAT  300
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GATTTCAGGAAATGCCTTT-AACCTGTC-TAAAACACATGTATTGAACAT  286

seq1  ACTCCTCTTTTGTTCACTTTTCCTGTAATGGTTTCCTGTTCTTGTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCTTTTGTTCACTTTTCCTGTAATGGTTTCCTGTTCTTGTGATGT  336

seq1  GATATAGTAACGTACATAATATTATCACATTTTAAAGATTGCTTATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGTAACGTACATAATATTATCACATTTTAAAGATTGCTTATGCCT  386

seq1  TTCTACATTCTCTCTATTATCTCTGAAAACCTTTTTTCTTTTTCCGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTCTCTCTATTATCTCTGAAAACCTTTTTTCTTTTTCCGTTTA  436

seq1  TCGTTTATATTTTGGTCTCTATCATTCACATTTAGACTTACCTCAAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTATATTTTGGTCTCTATCATTCACATTTAGACTTACCTCAAAATC  486

seq1  CCATCAATTCTTTGGACATTTGAATTTTAGAAGTTTGGAGTCAAGCGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATTCTTTGGACATTTGAATTTTAGAAGTTTGGAGTCAAGCGCTC  536

seq1  CTTGTATGGTAGGTAAGTCTGCAGTTTGGTGGGTCTCATTGAGACTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGGTAGGTAAGTCTGCAGTTTGGTGGGTCTCATTGAGACTTTAA  586

seq1  AGGAAGGAAGACAAAACAAAACATGGTCTGTTCTTTTGAGCTACTAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGACAAAACAAAACATGGTCTGTTCTTTTGAGCTACTAGATT  636

seq1  TTTTTCAAAGAGAGAGGAAACAGAGACAGAGACCATTCAACCTTCTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAAGAGAGAGGAAACAGAGACAGAGACCATTCAACCTTCTGACT  686

seq1  TGGAATGGAAATCAGTGTCTTTTAAACAATTTAATCACATTTTCTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGAAATCAGTGTCTTTTAAACAATTTAATCACATTTTCTTTATG  736

seq1  TATGTATTTATGTATTTGAGTAAGTGTAGAGGTCAGAGGACAAGTCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTATGTATTTGAGTAAGTGTAGAGGTCAGAGGACAAGTCTTGG  786

seq1  GAGTTTTTTCTTTTCATGATTTGGGATCCAGGGAGTGAACTCAAGTTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTCTTTTCATGATTTGGGATCCAGGGAGTGAACTCAAGTTATC  836

seq1  AGACTTGGCAGCAAGCACCTTTACCTGTTGAGCCATCTCACCAGTCTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGCAGCAAGCACCTTTACCTGTTGAGCCATCTCACCAGTCTGGA  886

seq1  CCATGTTCCAAGATGTGAGGCTCCCACTTTGTAACCACATAGTCTCTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCCAAGATGTGAGGCTCCCACTTTGTAACCACATAGTCTCTCAC  936

seq1  CAAATGCTGTGACATCTCCAGCACTCCATCCCTTTCCTCTGTTGGATGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTGTGACATCTCCAGCACTCCATCCCTTTCCTCTGTTGGATGCA  986

seq1  AGTCTGCCATATAGAATAGACCCCTTGGCTGCTGCTGGGGTAGTTGGTGA  1050
      ||||||||||||||||||||||||||||| |||||||||||||  |||||
seq2  AGTCTGCCATATAGAATAGACCCCTTGGCCGCTGCTGGGGTAG-AGGTGA  1035

seq1  GATTAGCTACTTGAATTC  1068
      |||||||||| |||||||
seq2  GATTAGCTAC-TGAATTC  1052