BAC Information

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BAC

Clone NameB6Ng01-111E01
Chromosome8 (Build37)
Map Location 110,892,342 - 111,028,095
singlet/doubletdoublet
Overlap genenone
Upstream geneNfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111E01.bB6Ng01-111E01.g
ACCDH917645DH917646
length1,1641,187
definitionDH917645|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E01, 5' end.DH917646|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,026,915 - 111,028,095)(110,892,342 - 110,893,535)
sequence
gaattcaaggcctgccgggactacgaaggaagattctgtttcaaaacaaa
taaaaataattctctaagacaaaaaacctacagtacgatccttgcttgtc
tttaatatttacatccttgataactggtgagcatctttaactcacaactt
cacgttgattcagaatagtcacatgatcgctgtgcactcctgccccgatg
ttccagtggtggccagcatctgctgttttcttttgtgttagatttctata
catagtgcagaatcctggtctgaaggttgatgtgaaaatctaaggttttt
tggtttctctttcatttcaaggtctgatgatctcctgcgccgcacttgat
ccacagggcagaagcaagacattataacagccaggggctctctccccagc
aggatgcttgatgataccataggactagccatcagggctctatgtcttct
tcaggagccacatctgcccccaacatccccatagccaataagcctgcatc
tctaggcaggactttctttttcattccccaatattttgttctgtcctgaa
ttcatgattcaagcaccgagtctagtaacttcttgttagacaagttgagt
ctttggtgtctcacaggagttcagttccgggtggccactgccgagtctgt
gaggcctgtggcttttgtctctgtcattactctggatttctgttcaatga
ggggacttcctaatctatctccatatagaacacgccctcctgacatctga
tacattgaatcagtagtggctccagagaaggtgtgagtttatcatgttat
ttctggctcagatttaacacaagttttggtatgcttcctcatagtttgcg
tgctctctgaggttctgatttgtgaagaaaccttgttaacatttctgcag
cccctgcttacttttaatttaattacttttcaaaaccagaaaaagacctc
taaactctcacaacgaatcatttaaggcaaatagcagtttccctgttatg
tagactctctgttcatgggagggagatacattttgccgatctcccaaaca
gctccatcagatggaagataaattccggcttcctctgaacaggagtctca
gtacggcaaggcagcgttcttgtggatttcttggtgagatctccccagcg
cttgcttcgacgtg
gaattccatgtctaccaagggatgaccaggcgcgtgcacacgtgcgcgca
cacatgcacacacacctgcaaagatgattatttggtctctcctgcctaga
gtgtcttgattttattttctgttgatttttattggcataaaacgtttcac
ttttacctttctgcatttatcacaatgacagggacattgaaatggtggct
gtaaatgaaatatgtatgtatcctgaagatatttgtgtaatttaggaaaa
ttattctgcacattcattcaaaggaaatggctccatccctgtcttgctaa
caccacgaaaagccttcactaatcgtacccaaacataagaacgagcacac
attacttaaacataccaaatacacgaacatataaatagtgtttaaaaata
tctcttacacaataaattaccatcactatgttaaaataccaattctagag
aaaattgatttaagaaaaatagctaatcacagtgccccataaaagcagca
tttttttttctatagcatttaattttcaagccaagagattcggatgcttg
tctcattttgtgcgttccattataatttttttccattcatttgctgaaca
atcatcttctaaaacatcccacttctgccgtggtatcaactggcgagtta
ccaaaaagatgtaaatgatttaattgaattagtttaattaggtaaattaa
cagttaagcatatcactcacaggcttgttctgtttatactacgttaggga
gataatttagtgcggaagcaggaggaggggcatgaccaaaattccaatgt
aatgagccagattagctggcagagggagaaacacaaagatagcagttgct
ggcactacgtcttgggtaaataaattcatgtgctcgagtttattacgtaa
catagacagtcaaagggatagtcaggattgagcaggcaaatataccacct
gtggagaagtgaccaaggttccttggccctccagaacatatttttcagaa
gtttctaggcttcttgggctattcagacaattgaggtgatgcaatagcag
cctggggggaggccaacatctgattgattgctgaaagaacaaatagccta
tgtgattgcttatgagatattacactaatgagcaaacagctgctttaaac
atgagaacatgcattatctttgtgagcaggagtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111026915_111028095
seq2: B6Ng01-111E01.b_41_1204 (reverse)

seq1  CACGTTCGAAGCAAGGCGGGCCTGTGGGAG-TCTCACAAAGAAAATACAC  49
      |||| ||||||||| |||   ||| ||||| |||||| ||| |||| |||
seq2  CACG-TCGAAGCAA-GCG---CTG-GGGAGATCTCACCAAG-AAATCCAC  43

seq1  AAGAAAACGGCTGCC-TGCGGTACTGAGAACTTCCTGGTTTCAGAGAGAG  98
      |||||    |||||| ||| |||||||||   |||||  |||||||  ||
seq2  AAGAA---CGCTGCCTTGCCGTACTGAGA--CTCCTG--TTCAGAGGAAG  86

seq1  CCCGGATTTATCTTCCATCTGATGGAGCTGTTTGTGAGATCGGCAAAATG  148
      || | ||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCGGAATTTATCTTCCATCTGATGGAGCTGTTTGGGAGATCGGCAAAATG  136

seq1  TATCTCCCTCCCATGAACAGAGAGGTTCTACAT-ACAGGGAAAACTTGCT  197
      ||||||||||||||||||||||||  ||||||| |||||||||   ||||
seq2  TATCTCCCTCCCATGAACAGAGAG--TCTACATAACAGGGAAA--CTGCT  182

seq1  ATTTGCCTTAAATGATTTCGTTGTGAGAGTTTAGAGGTC-TTTTCTGGTT  246
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  ATTTGCCTTAAATGA-TTCGTTGTGAGAGTTTAGAGGTCTTTTTCTGGTT  231

seq1  TTGAAAAAAATAAAATAAAATAAAAAGTAAGCAGGGGCTGCAGAAATGTT  296
      |||||||      ||| |||| ||||||||||||||||||||||||||||
seq2  TTGAAAA----GTAATTAAATTAAAAGTAAGCAGGGGCTGCAGAAATGTT  277

seq1  -ACAAGGTTTCTTCACAATTCAGAACCTCAGAGAGCACGC-AACTATGAG  344
       ||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  AACAAGGTTTCTTCACAAATCAGAACCTCAGAGAGCACGCAAACTATGAG  327

seq1  GAAGCATACCAAAACTTGTGTTAAATCTGAGCCAGAAATAACATGATAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATACCAAAACTTGTGTTAAATCTGAGCCAGAAATAACATGATAAA  377

seq1  CTCACACCTTCTCTGGAGCCACTACTGATTCAATGTATCAGATGTCAGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCTTCTCTGGAGCCACTACTGATTCAATGTATCAGATGTCAGGA  427

seq1  GGGCGTGTTCTATATGGAGATAGATTAGGAAGTCCCCTCATTGAACAGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGTTCTATATGGAGATAGATTAGGAAGTCCCCTCATTGAACAGAA  477

seq1  ATCCAGAGTAATGACAGAGACAAAAGCCACAGGCCTCACAGACTCGGCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGTAATGACAGAGACAAAAGCCACAGGCCTCACAGACTCGGCAG  527

seq1  TGGCCACCCGGAACTGAACTCCTGTGAGACACCAAAGACTCAACTTGTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACCCGGAACTGAACTCCTGTGAGACACCAAAGACTCAACTTGTCT  577

seq1  AACAAGAAGTTACTAGACTCGGTGCTTGAATCATGAATTCAGGACAGAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAGTTACTAGACTCGGTGCTTGAATCATGAATTCAGGACAGAAC  627

seq1  AAAATATTGGGGAATGAAAAAGAAAGTCCTGCCTAGAGATGCAGGCTTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGGGGAATGAAAAAGAAAGTCCTGCCTAGAGATGCAGGCTTAT  677

seq1  TGGCTATGGGGATGTTGGGGGCAGATGTGGCTCCTGAAGAAGACATAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGGGGATGTTGGGGGCAGATGTGGCTCCTGAAGAAGACATAGAG  727

seq1  CCCTGATGGCTAGTCCTATGGTATCATCAAGCATCCTGCTGGGGAGAGAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATGGCTAGTCCTATGGTATCATCAAGCATCCTGCTGGGGAGAGAG  777

seq1  CCCCTGGCTGTTATAATGTCTTGCTTCTGCCCTGTGGATCAAGTGCGGCG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCTGTTATAATGTCTTGCTTCTGCCCTGTGGATCAAGTGCGGCG  827

seq1  CAGGAGATCATCAGACCTTGAAATGAAAGAGAAACCAAAAAACCTTAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATCATCAGACCTTGAAATGAAAGAGAAACCAAAAAACCTTAGAT  877

seq1  TTTCACATCAACCTTCAGACCAGGATTCTGCACTATGTATAGAAATCTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCAACCTTCAGACCAGGATTCTGCACTATGTATAGAAATCTAA  927

seq1  CACAAAAGAAAACAGCAGATGCTGGCCACCACTGGAACATCGGGGCAGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAAAACAGCAGATGCTGGCCACCACTGGAACATCGGGGCAGGA  977

seq1  GTGCACAGCGATCATGTGACTATTCTGAATCAACGTGAAGTTGTGAGTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGCGATCATGTGACTATTCTGAATCAACGTGAAGTTGTGAGTTA  1027

seq1  AAGATGCTCACCAGTTATCAAGGATGTAAATATTAAAGACAAGCAAGGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTCACCAGTTATCAAGGATGTAAATATTAAAGACAAGCAAGGAT  1077

seq1  CGTACTGTAGGTTTTTTGTCTTAGAGAATTATTTTTATTTGTTTTGAAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTGTAGGTTTTTTGTCTTAGAGAATTATTTTTATTTGTTTTGAAAC  1127

seq1  AGAATCTTCCTTCGTAGTCCCGGCAGGCCTTGAATTC  1181
      |||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTCCTTCGTAGTCCCGGCAGGCCTTGAATTC  1164

seq1: chr8_110892342_110893535
seq2: B6Ng01-111E01.g_69_1255

seq1  GAATTCCATGTCTACCAAGGGATGACCAGGCGCGTGCACACGTGCGCGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCTACCAAGGGATGACCAGGCGCGTGCACACGTGCGCGCA  50

seq1  CACATGCACACACACCTGCAAAGATGATTATTTGGTCTCTCCTGCCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACACACACCTGCAAAGATGATTATTTGGTCTCTCCTGCCTAGA  100

seq1  GTGTCTTGATTTTATTTTCTGTTGATTTTTATTGGCATAAAACGTTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGATTTTATTTTCTGTTGATTTTTATTGGCATAAAACGTTTCAC  150

seq1  TTTTACCTTTCTGCATTTATCACAATGACAGGGACATTGAAATGGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTTTCTGCATTTATCACAATGACAGGGACATTGAAATGGTGGCT  200

seq1  GTAAATGAAATATGTATGTATCCTGAAGATATTTGTGTAATTTAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAAATATGTATGTATCCTGAAGATATTTGTGTAATTTAGGAAAA  250

seq1  TTATTCTGCACATTCATTCAAAGGAAATGGCTCCATCCCTGTCTTGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGCACATTCATTCAAAGGAAATGGCTCCATCCCTGTCTTGCTAA  300

seq1  CACCACGAAAAGCCTTCACTAATCGTACCCAAACATAAGAACGAGCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGAAAAGCCTTCACTAATCGTACCCAAACATAAGAACGAGCACAC  350

seq1  ATTACTTAAACATACCAAATACACGAACATATAAATAGTGTTTAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAAACATACCAAATACACGAACATATAAATAGTGTTTAAAAATA  400

seq1  TCTCTTACACAATAAATTACCATCACTATGTTAAAATACCAATTCTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACACAATAAATTACCATCACTATGTTAAAATACCAATTCTAGAG  450

seq1  AAAATTGATTTAAGAAAAATAGCTAATCACAGTGCCCCATAAAAGCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGATTTAAGAAAAATAGCTAATCACAGTGCCCCATAAAAGCAGCA  500

seq1  TTTTTTTTTCTATAGCATTTAATTTTCAAGCCAAGAGATTCGGATGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTATAGCATTTAATTTTCAAGCCAAGAGATTCGGATGCTTG  550

seq1  TCTCATTTTGTGCGTTCCATTATAATTTTTTTCCATTCATTTGCTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTGTGCGTTCCATTATAATTTTTTTCCATTCATTTGCTGAACA  600

seq1  ATCATCTTCTAAAACATCCCACTTCTGCCGTGGTATCAACTGGCGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTCTAAAACATCCCACTTCTGCCGTGGTATCAACTGGCGAGTTA  650

seq1  CCAAAAAGATGTAAATGATTTAATTGAATTAGTTTAATTAGGTAAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGATGTAAATGATTTAATTGAATTAGTTTAATTAGGTAAATTAA  700

seq1  CAGTTAAGCATATCACTCACAGGCTTGTTCTGTTTATACTACGTTAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGCATATCACTCACAGGCTTGTTCTGTTTATACTACGTTAGGGA  750

seq1  GATAATTTAGTGCGGAAGCAGGAGGAGGGGCATGACCAAAATTCCAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAGTGCGGAAGCAGGAGGAGGGGCATGACCAAAATTCCAATGT  800

seq1  AATGAGCCAGATTAGCTGGCAGAGGGAGAAACACAAAGATAGCAGTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCAGATTAGCTGGCAGAGGGAGAAACACAAAGATAGCAGTTGCT  850

seq1  GGCACTACGTC-TGGGTAAAT-AATTCATGTGCTCGAG-TTATTACGTAA  897
      ||||||||||| ||||||||| |||||||||||||||| |||||||||||
seq2  GGCACTACGTCTTGGGTAAATAAATTCATGTGCTCGAGTTTATTACGTAA  900

seq1  CATAGACAGTCAAAGGGATAGTCAGGAATGAGCAGGCAAAAATACCA-CT  946
      ||||||||||||||||||||||||||| |||||||||||| |||||| ||
seq2  CATAGACAGTCAAAGGGATAGTCAGGATTGAGCAGGCAAATATACCACCT  950

seq1  GT-GAG-AGTGACCAAGGTTCCCTGGCCCTTCCAGAAACATA-TTTTCAG  993
      || ||| ||||||||||||||| |||||| ||||| |||||| |||||||
seq2  GTGGAGAAGTGACCAAGGTTCCTTGGCCC-TCCAG-AACATATTTTTCAG  998

seq1  AAGTTTCTAGCCTTCTTGGGCTAATTCAGACAAATTGAGGTGATGC-ATA  1042
      |||||||||| ||||||||||| |||||||| |||||||||||||| |||
seq2  AAGTTTCTAGGCTTCTTGGGCT-ATTCAGAC-AATTGAGGTGATGCAATA  1046

seq1  GCAGCCT-GGGGGAGGCAAACATCTGAATGAATGCTGAAAGAAACAAATA  1091
      ||||||| ||||||||| ||||||||| ||| ||||||||| ||||||||
seq2  GCAGCCTGGGGGGAGGCCAACATCTGATTGATTGCTGAAAG-AACAAATA  1095

seq1  AGCTATGGTTTGATTGC-TATGAGTATATACCACTAAATTAAGCAAAACA  1140
        |||||   ||||||| |||||| ||||  ||||||  | ||| |||||
seq2  GCCTATG---TGATTGCTTATGAG-ATATTACACTAA--TGAGC-AAACA  1138

seq1  GGCTGCTTTAACCATGAGA--CTGCATTCATTCTTTGTTGGAGGCAGGAG  1188
       |||||||||| |||||||   ||||||   |||||||  || |||||| 
seq2  -GCTGCTTTAAACATGAGAACATGCATT--ATCTTTGT--GA-GCAGGA-  1181

seq1  GTCTCA  1194
      ||||||
seq2  GTCTCA  1187