BAC Information

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BAC

Clone NameB6Ng01-111L18
Chromosome8 (Build37)
Map Location 111,236,421 - 111,403,048
singlet/doubletdoublet
Overlap geneAtbf1
Upstream geneLOC100041744
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111L18.bB6Ng01-111L18.g
ACCDH918000DH918001
length1,144623
definitionDH918000|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L18, 5' end.DH918001|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,401,886 - 111,403,048)(111,236,421 - 111,237,036)
sequence
gaattctcccacgtcacatctgtgggtgactggcatacgcccagccaggc
ggagctggcatcgaacaccctgctgagaaccaggccaaccacgaaggaag
gaggccaatgggaggctctcagagctgagatgtaccggagctcggcacag
tcctgtggcccagatgtccctgaggactcctgtgctgaagcttgtccctt
ccgcagttggccagtgggtctgaggatcactaggaccccacacagtcctc
tctatccaacatgagagagttccattgatagagtcacagctgaacgggct
acggggaggcaggacctggctggagtaattaaagcataggcttgtgagag
cgtatcttgtccccagtgcctgtgtgctttctcctacactgcttcccact
tctggctactgtaaactgaagagcacctcccaccgtctgttctggacacc
tttgttttctgcttccgtctcatgtctacagctaaaggagccagccagtg
gtgacctaatacttccaaaaccgtgggctgaaatagcctatcatctcaga
agctgttcctctcaggagcccctccatgatgacagcactaacacacccta
ggtgagcctgcactagtaagtagtacagtaagtccagctgtccccgtttg
gctgtgggtgctgctcccaggcattcccctggtttaagctacgctgggcg
cagaggctggccatgtcctccagtaagaaagccaaacctgaaaactgctc
cgagtgccaatccgctggcaggagtcaggaggtagggatggtataggaga
caggaagagaggaaaacctcgtttctgcaatcaagaggactgactatcac
tagcaggtgaccaaggaggcaggcaggttacagtagggaatgtttggagg
accctccagtcccattacagaccagaactaacactactggggatggctct
tcccagtgccactgacgagctacactgcttgacttttcatgccacttacc
cagctggcctaaggcatggtagcactactaagcatctctaaagtgtgctc
tcacaggcagagaaatttctggctaaaggattggactaaagaccgagata
actggatatgctgttggcaccaagctggaggctaaaattaacaa
gaattccctcttgttttggttggatggaaatgagttacccccgaggcagg
agcaccccagcttttttttttttttttttttcacagtccatcctgttcac
gacggtctccaggctgtaggttacctgcctgtggctctccaagttaaatt
tttgtctaaacaaagacaggcttgagtaggcctcgtcatgcatgtagtta
ttgcagggttgagataaagaaaggggatcagggtcattcttttttctgct
tgtcaggcttctgaggtgtagaaggcctgacccagggcctgggacagagg
caggatcaaggcagaggccctctactgccaccccctcctcaggatctctc
attactttagatcctgtcttgtggggtgtttttttttccctttctagctt
tcattttgtcaaaatgtgtatcccatgcccccacctatactcacctcctt
acaagattctgaggctgtcccgtgaataaaactcatgaggaagctgcaaa
attcagttttccaggagtggaaagcagtttcctgttggctttgcatcttc
agcctgtagcttccaggtgagggctgagggtctggaatctctgttttccc
aaagagatttctggagggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111401886_111403048
seq2: B6Ng01-111L18.b_45_1188 (reverse)

seq1  TTGTTAATTTTTTTCCCCTCCTACTTTGGTGCTCAACAGCCATATCCAGT  50
      |||||||   ||||  ||||| |  ||||||| |||||| ||||||||||
seq2  TTGTTAA---TTTTAGCCTCC-AGCTTGGTGC-CAACAG-CATATCCAGT  44

seq1  TATCTTTCTGGTCTTTAGTCCCAAATCCTTTAGCCAGATATTTTCTCTGC  100
      |||||    ||||||||||||  ||||||||||||||| | |||||||||
seq2  TATCT---CGGTCTTTAGTCC--AATCCTTTAGCCAGA-AATTTCTCTGC  88

seq1  CTGTGAGATTCCACACTTTAGAGATGCCCTAGTAGTGCTACCATGCCCTA  150
      ||||||||   ||||||||||||||| | |||||||||||||||||| ||
seq2  CTGTGAGA--GCACACTTTAGAGATG-CTTAGTAGTGCTACCATGCCTTA  135

seq1  GGCCAGCTGGGTAAGTGGCCATGGAAAAGTCAAGCAGGTGTAAGCCTCGG  200
      |||||||||||||||||| ||| ||||||||||||| |||||   ||| |
seq2  GGCCAGCTGGGTAAGTGG-CAT-GAAAAGTCAAGCA-GTGTA--GCTC-G  179

seq1  TCAGTGGCACTGGGAAGAGCCAT-CCCAGTAGTGTTAGTTCTGGTCTGTA  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGTGGCACTGGGAAGAGCCATCCCCAGTAGTGTTAGTTCTGGTCTGTA  229

seq1  AT-GGACTGGAGGGTTCTCCAAACATTCCCTACTGTAACCTGCCTGCCTC  298
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGGGACTGGAGGGTCCTCCAAACATTCCCTACTGTAACCTGCCTGCCTC  279

seq1  CTTGGTCACCTGCTAGTGATAGTCAGTCCTCTTGATTGCAGAAACGAGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCACCTGCTAGTGATAGTCAGTCCTCTTGATTGCAGAAACGAGGT  329

seq1  TTTCCTCTCTTCCTGTCTCCTATACCATCCCTACCTCCTGACTCCTGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCTTCCTGTCTCCTATACCATCCCTACCTCCTGACTCCTGCCA  379

seq1  GCGGATTGGCACTCGGAGCAGTTTTCAGGTTTGGCTTTCTTACTGGAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTGGCACTCGGAGCAGTTTTCAGGTTTGGCTTTCTTACTGGAGGA  429

seq1  CATGGCCAGCCTCTGCGCCCAGCGTAGCTTAAACCAGGGGAATGCCTGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCAGCCTCTGCGCCCAGCGTAGCTTAAACCAGGGGAATGCCTGGG  479

seq1  AGCAGCACCCACAGCCAAACGGGGACAGCTGGACTTACTGTACTACTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCACCCACAGCCAAACGGGGACAGCTGGACTTACTGTACTACTTAC  529

seq1  TAGTGCAGGCTCACCTAGGGTGTGTTAGTGCTGTCATCATGGAGGGGCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAGGCTCACCTAGGGTGTGTTAGTGCTGTCATCATGGAGGGGCTC  579

seq1  CTGAGAGGAACAGCTTCTGAGATGATAGGCTATTTCAGCCCACGGTTTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAACAGCTTCTGAGATGATAGGCTATTTCAGCCCACGGTTTTG  629

seq1  GAAGTATTAGGTCACCACTGGCTGGCTCCTTTAGCTGTAGACATGAGACG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTAGGTCACCACTGGCTGGCTCCTTTAGCTGTAGACATGAGACG  679

seq1  GAAGCAGAAAACAAAGGTGTCCAGAACAGACGGTGGGAGGTGCTCTTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAAAACAAAGGTGTCCAGAACAGACGGTGGGAGGTGCTCTTCAG  729

seq1  TTTACAGTAGCCAGAAGTGGGAAGCAGTGTAGGAGAAAGCACACAGGCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAGCCAGAAGTGGGAAGCAGTGTAGGAGAAAGCACACAGGCAC  779

seq1  TGGGGACAAGATACGCTCTCACAAGCCTATGCTTTAATTACTCCAGCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAAGATACGCTCTCACAAGCCTATGCTTTAATTACTCCAGCCAG  829

seq1  GTCCTGCCTCCCCGTAGCCCGTTCAGCTGTGACTCTATCAATGGAACTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCCTCCCCGTAGCCCGTTCAGCTGTGACTCTATCAATGGAACTCT  879

seq1  CTCATGTTGGATAGAGAGGACTGTGTGGGGTCCTAGTGATCCTCAGACCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTGGATAGAGAGGACTGTGTGGGGTCCTAGTGATCCTCAGACCC  929

seq1  ACTGGCCAACTGCGGAAGGGACAAGCTTCAGCACAGGAGTCCTCAGGGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAACTGCGGAAGGGACAAGCTTCAGCACAGGAGTCCTCAGGGAC  979

seq1  ATCTGGGCCACAGGACTGTGCCGAGCTCCGGTACATCTCAGCTCTGAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCCACAGGACTGTGCCGAGCTCCGGTACATCTCAGCTCTGAGAG  1029

seq1  CCTCCCATTGGCCTCCTTCCTTCGTGGTTGGCCTGGTTCTCAGCAGGGTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATTGGCCTCCTTCCTTCGTGGTTGGCCTGGTTCTCAGCAGGGTG  1079

seq1  TTCGATGCCAGCTCCGCCTGGCTGGGCGTATGCCAGTCACCCACAGATGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATGCCAGCTCCGCCTGGCTGGGCGTATGCCAGTCACCCACAGATGT  1129

seq1  GACGTGGGAGAATTC  1163
      |||||||||||||||
seq2  GACGTGGGAGAATTC  1144

seq1: chr8_111236421_111237036
seq2: B6Ng01-111L18.g_70_692

seq1  GAATTCCCTCTTGTTTTGGTTGGATGGAAATGAGTTACCCCCGAGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTTGTTTTGGTTGGATGGAAATGAGTTACCCCCGAGGCAGG  50

seq1  AGCACCCCAGC-------TTTTTTTTTTTTTCACAGTCCATCCTGTTCAC  93
      |||||||||||       ||||||||||||||||||||||||||||||||
seq2  AGCACCCCAGCTTTTTTTTTTTTTTTTTTTTCACAGTCCATCCTGTTCAC  100

seq1  GACGGTCTCCAGGCTGTAGGTTACCTGCCTGTGGCTCTCCAAGTTAAATT  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCTCCAGGCTGTAGGTTACCTGCCTGTGGCTCTCCAAGTTAAATT  150

seq1  TTTGTCTAAACAAAGACAGGCTTGAGTAGGCCTCGTCATGCATGTAGTTA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAACAAAGACAGGCTTGAGTAGGCCTCGTCATGCATGTAGTTA  200

seq1  TTGCAGGGTTGAGATAAAGAAAGGGGATCAGGGTCATTCTTTTTTCTGCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGTTGAGATAAAGAAAGGGGATCAGGGTCATTCTTTTTTCTGCT  250

seq1  TGTCAGGCTTCTGAGGTGTAGAAGGCCTGACCCAGGGCCTGGGACAGAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCTTCTGAGGTGTAGAAGGCCTGACCCAGGGCCTGGGACAGAGG  300

seq1  CAGGATCAAGGCAGAGGCCCTCTACTGCCACCCCCTCCTCAGGATCTCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCAAGGCAGAGGCCCTCTACTGCCACCCCCTCCTCAGGATCTCTC  350

seq1  ATTACTTTAGATCCTGTCTTGTGGGGTGTTTTTTTTTCCCTTTCTAGCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTAGATCCTGTCTTGTGGGGTGTTTTTTTTTCCCTTTCTAGCTT  400

seq1  TCATTTTGTCAAAATGTGTATCCCATGCCCCCACCTATACTCACCTCCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTCAAAATGTGTATCCCATGCCCCCACCTATACTCACCTCCTT  450

seq1  ACAAGATTCTGAGGCTGTCCCGTGAATAAAACTCATGAGGAAGCTGCAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTCTGAGGCTGTCCCGTGAATAAAACTCATGAGGAAGCTGCAAA  500

seq1  ATTCAGTTTTCCAGGAGTGGAAAGCAGTTTCCTGTTGGCTTTGCATCTTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTTCCAGGAGTGGAAAGCAGTTTCCTGTTGGCTTTGCATCTTC  550

seq1  AGCCTGTAGCTTCCAGGTGAGGGCTGAGGGTCTGGAATCTCTGTTTTCCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTAGCTTCCAGGTGAGGGCTGAGGGTCTGGAATCTCTGTTTTCCC  600

seq1  AAAGAGATTTCTGGAGGGGGGGG  616
      |||||||||||||||||||||||
seq2  AAAGAGATTTCTGGAGGGGGGGG  623