BAC Information

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BAC

Clone NameB6Ng01-111N06
Chromosome8 (Build37)
Map Location 101,648,747 - 101,819,766
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111N06.bB6Ng01-111N06.g
ACCDH918064DH918065
length7591,046
definitionDH918064|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N06, 5' end.DH918065|Mus musculus domesticus DNA, BAC clone: B6Ng01-111N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,819,004 - 101,819,766)(101,648,747 - 101,649,807)
sequence
gaattctagggatcatgtcatgatatacaaaacactatttattataccat
ggccctgggatgatgatgcctgcctccaaatagttcctataagagcccaa
tcttcaaataaaatctaatatatgaaataaatgacatagaatagaaaata
ctgagcatcttttaattttttgagtaattacgaccttgatgtttgggcgt
ttttgtttgtctgtctgtctttcttccttccttccttccttccttccttc
cttccttccttccttccttccttcctttctttctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttccttcctg
gcatgcacttgatttgagcacactatattaaaactgaaaaaatacgcaag
aacttgttagacctagatttaaaaaccttcattttctgagctctgtaaat
caaagaatagggctcttatgataattagatgagataaaagagaaaataat
ttaaaatcctggatgcaggacaactttcaattaatatccttgaggaaata
gttatataataaaaagaataggttactcctctcactggaaattggcagtg
ttattttctaaggagtctccatggaaatttattgaaaaatgtcaaattat
cttgcaaacaggatgggtgtatctcaatattcagaggctatcgggaaaac
ttcctgtaaggaattaggcatccttctttcacattaccgataggaaagga
tattgagta
gaattcactctgtagatcaggacggcattggactcagaaatcttcctgcc
tcttcctcccaagtgctgggattaaaaggcatgtgccaccactgcctggc
aaaattgattttcttattgatcactttttttctaataatacttaattgtg
cacatgggaaaaatccatgttaggtaaatacaacatctacagtattgttc
catctcagtgtgttttgtcatttgttgttatgaaacttttccttgaatta
cagtaatatttctcctctgttgactcttgaccttttttgtttgtttgttt
gtttgtttgtctgaattggtatacgtcttgtattccttttaacctttatg
tgtacctattacttaacatccatatatgaatagaaatgaggcttacatat
tgccttctttataaaatctgccctgataattggtctagtagacgaattta
tagcagtctatttatagcaatgtgaaggttttccatgacttcagggtaga
gatgtttgaatttcacattgtacttcaaatttctaagacctttcccatca
ggtttttcataataaccccacagttgtacagctgtttcctctacatcgga
acattccttcctggaaagagggggcagtacagtaaaatcaggaaagtgag
tcagacttaggaagctctgtgcattctaaacatcccagatcttcctcaag
gttgcacaagcagtaacacttgctaaagagattccctcagttcagctgct
gcctgccagtcaggcattcagggtgtttcagtgaagtaacctaaagagtc
aacattcaacctctggtgggctttttagttatgatgttgcctttaagcca
tccacgttcctatcagcatacccacatccattcttctgcaggtgatctca
atatagtcacttgtttgtagtttgtgtgttttggtcatctcagttttcta
tgaggatgacacttttctctttctttccaggatctgtcataaaacatctt
gtatcaatctctctgatcaaatgttttattattcattttcattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101819004_101819766
seq2: B6Ng01-111N06.b_47_805 (reverse)

seq1  TACTCAATATCCTTTCCTCTTCGGTAATGTGAAAGAAGGGATGCTAAATT  50
      ||||||||||||||||||  ||||||||||||||||| ||||||  ||||
seq2  TACTCAATATCCTTTCCT-ATCGGTAATGTGAAAGAA-GGATGCCTAATT  48

seq1  CCTTACAGGATGTTTTCCCGTATAGCCTCTGAATATTGAGATACACCCAT  100
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CCTTACAGGAAGTTTTCCCG-ATAGCCTCTGAATATTGAGATACACCCAT  97

seq1  CCTGTTTGCAAGATAATTTGACA-TTTTCAATATATTTCCATGGAGACTC  149
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  CCTGTTTGCAAGATAATTTGACATTTTTCAATAAATTTCCATGGAGACTC  147

seq1  CTTAGAAAATATACACTGCCAATTTACCAGTGAGAGGAGTAACCTATTCT  199
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  CTTAGAAAATA-ACACTGCCAATTT-CCAGTGAGAGGAGTAACCTATTCT  195

seq1  TTTTATTATATAACTATTTCCTCAAGGATATTAATTGAAAGTTGTCCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATATAACTATTTCCTCAAGGATATTAATTGAAAGTTGTCCTGC  245

seq1  ATCCAGGATTTTAAATTATTTTCTCTTTTATCTCATCTAATTATCATAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGATTTTAAATTATTTTCTCTTTTATCTCATCTAATTATCATAAG  295

seq1  AGCCCTATTCTTTGATTTACAGAGCTCAGAAAATGAAGGTTTTTAAATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTATTCTTTGATTTACAGAGCTCAGAAAATGAAGGTTTTTAAATCT  345

seq1  AGGTCTAACAAGTTCTTGCGTATTTTTTCAGTTTTAATATGGTGTGCTCA  399
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGTCTAACAAGTTCTTGCGTATTTTTTCAGTTTTAATATAGTGTGCTCA  395

seq1  AATCAAGTGCATGCCAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTGCATGCCAGGAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  445

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGA  495

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGACAG  545

seq1  ACAGACAAACAAAAACGCCCAAACATCAAGGTCGTAATTACTCAAAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAACAAAAACGCCCAAACATCAAGGTCGTAATTACTCAAAAAAT  595

seq1  TAAAAGATGCTCAGTATTTTCTATTCTATGTCATTTATTTCATATATTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATGCTCAGTATTTTCTATTCTATGTCATTTATTTCATATATTAG  645

seq1  ATTTTATTTGAAGATTGGGCTCTTATAGGAACTATTTGGAGGCAGGCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTGAAGATTGGGCTCTTATAGGAACTATTTGGAGGCAGGCATC  695

seq1  ATCATCCCAGGGCCATGGTATAATAAATAGTGTTTTGTATATCATGACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCAGGGCCATGGTATAATAAATAGTGTTTTGTATATCATGACAT  745

seq1  GATCCCTAGAATTC  763
      ||||||||||||||
seq2  GATCCCTAGAATTC  759

seq1: chr8_101648747_101649807
seq2: B6Ng01-111N06.g_68_1113

seq1  GAATTCACTCTGTAGATCAGGACGGCATTGGACTCAGAAATCTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGATCAGGACGGCATTGGACTCAGAAATCTTCCTGCC  50

seq1  TCTTCCTCCCAAGTGCTGGGATTAAAAGGCATGTGCCACCACTGCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCCAAGTGCTGGGATTAAAAGGCATGTGCCACCACTGCCTGGC  100

seq1  AAAATTGATTTTCTTATTGATCACTTTTTTTCTAATAATACTTAATTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGATTTTCTTATTGATCACTTTTTTTCTAATAATACTTAATTGTG  150

seq1  CACATGGGAAAAATCCATGTTAGGTAAATACAACATCTACAGTATTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAAAAATCCATGTTAGGTAAATACAACATCTACAGTATTGTTC  200

seq1  CATCTCAGTGTGTTTTGTCATTTGTTGTTATGAAACTTTTCCTTGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGTGTGTTTTGTCATTTGTTGTTATGAAACTTTTCCTTGAATTA  250

seq1  CAGTAATATTTCTCCTCTGTTGACTCTTGACCTTTTTTGTTTGTTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATATTTCTCCTCTGTTGACTCTTGACCTTTTTTGTTTGTTTGTTT  300

seq1  GTTTGTTTGTCTGAATTGGTATACGTCTTGTATTCCTTTTAACCTTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTCTGAATTGGTATACGTCTTGTATTCCTTTTAACCTTTATG  350

seq1  TGTACCTATTACTTAACATCCATATATGAATAGAAATGAGGCTTACATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTATTACTTAACATCCATATATGAATAGAAATGAGGCTTACATAT  400

seq1  TGCCTTCTTTATAAAATCTGCCCTGATAATTGGTCTAGTAGACGAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTTATAAAATCTGCCCTGATAATTGGTCTAGTAGACGAATTTA  450

seq1  TAGCAGTCTATTTATAGCAATGTGAAGGTTTTCCATGACTTCAGGGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCTATTTATAGCAATGTGAAGGTTTTCCATGACTTCAGGGTAGA  500

seq1  GATGTTTGAATTTCACATTGTACTTCAAATTTCTAAGACCTTTCCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGAATTTCACATTGTACTTCAAATTTCTAAGACCTTTCCCATCA  550

seq1  GGTTTTTCATAATAACCCCACAGTTGTACAGCTGTTTCCTCTACATCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCATAATAACCCCACAGTTGTACAGCTGTTTCCTCTACATCGGA  600

seq1  ACATTCCTTCCTGGAAAGAGGGGGCAGTACAGTAAAATCAGGAAAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTTCCTGGAAAGAGGGGGCAGTACAGTAAAATCAGGAAAGTGAG  650

seq1  TCAGACTTAGGAAGCTCTGTGCATTCTAAACATCCCAGATCTTCCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTAGGAAGCTCTGTGCATTCTAAACATCCCAGATCTTCCTCAAG  700

seq1  GTTGCACAAGCAGTAACACTTGCTAAAGAGATTCCCTCAGTTCAGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACAAGCAGTAACACTTGCTAAAGAGATTCCCTCAGTTCAGCTGCT  750

seq1  GCCTGCCAGTCAGGCATTCAGGGTGTTTCAGTGAAGTAACCTAAAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAGTCAGGCATTCAGGGTGTTTCAGTGAAGTAACCTAAAGAGTC  800

seq1  AACATTCAACCTCTGGTGGGCTTTTTAGTTATGATGTTGCCTTTAAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAACCTCTGGTGGGCTTTTTAGTTATGATGTTGCCTTTAAGCCA  850

seq1  TCCACGTTCCTATCAGCATACCCACATCCATTCTTCTGCAGGTGATCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTTCCTATCAGCATACCCACATCCATTCTTCTGCAGGTGATCTCA  900

seq1  ATATAGTCACTTGTTTGTTAGTTTTGTGTTGTTTTTGGTCAATCTCAGTT  950
      ||||||||||||||||| ||| |||||||   |||||||| |||||||||
seq2  ATATAGTCACTTGTTTG-TAG-TTTGTGT--GTTTTGGTC-ATCTCAGTT  945

seq1  TTCTATGAAGAATGAACACTTTTCTCCTTTCTTTCCAGGATCTGTCATAA  1000
      ||||||| || ||| |||||||||| ||||||||||||||||||||||||
seq2  TTCTATG-AGGATG-ACACTTTTCT-CTTTCTTTCCAGGATCTGTCATAA  992

seq1  AACATCTTGTATCAATTCTCCTTCTGATCAAATGTTTTAATTATTTCATT  1050
      ||||||||||||||| ||||  |||||||||||||||| |||| ||||  
seq2  AACATCTTGTATCAA-TCTC--TCTGATCAAATGTTTT-ATTA-TTCA--  1035

seq1  TTTTCATTATA  1061
      |||||||||||
seq2  TTTTCATTATA  1046