BAC Information

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BAC

Clone NameB6Ng01-112C20
Chromosome8 (Build37)
Map Location 52,145,164 - 52,146,395
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC667517, LOC623872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C20.bB6Ng01-112C20.g
ACCDH918314DH918315
length1,1711,239
definitionDH918314|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C20, 5' end.DH918315|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaagaatcttttttttaaattcatttttattagatatt
ttctttatatacatttcaaatgttatcccgaaagttccctataccctccc
ccggccctgctcccctatccacccactcctgcttcttggtcctggcattc
ccctgtactggggcatataaagtttgcaataccaaggggcttctcttccc
aatgatggctgactaggccatcttctgctacatatgcagctagagacacg
agctctgggggtactgattatttcatattgttgttccacttatagggttg
caaaccccttcaactccttgggtgctttctctagcttctccattgggggc
cctgtgttctatcttatagatgactgtgagcatccatttctgtatttgcc
aggcactggaatagcctcatatgtgacaggtataacagggtcccttcagc
aaaatctttctgccatatgcaatagtgtctgggcttggtggctgattatg
gaatggatcccgggtggggtagtctctggatagtccatcctttcatctta
gctccaaattttgtctctgtaactcctttcatgggtattttgttccctat
tctaaggaggaatgaagtatccacccattggtctcccctcttcttgattt
tcttgtgttttacaaattgtgtctttggtgttctgtttgagaagctccta
aaaaaaggttcaaagtccttagtaatcagagaaatgctaatcaaaatgtc
cctgagatttcacctcacaccaattagaatggataagatgaaaacctcag
tgacaacatatgttggtgatgatgtggagaaagaggaacactcctccatt
gctggtggggttgcaaattggtacaaccactctggacatcaatctggagt
ttccttagaaaattagaaatagttctaatgaagacccaccatatcaccat
tgggaaatatactcaaaatgccccaacatgctgtaagggcacatgctcac
tatgttcatagcagccttgtttgtgatatcagaagcttgaaacacccaga
tgtccatgattgagaatggatagataaatgtggtcatttacaaatagaat
actactcactcttaagaatgagacatcctggaattgccatcaatggattg
acctgaaaaaatcactttatt
gaattccaggacattttctagaatactcaaataagatactattctgattt
tacagtatcaatctcccagcctgttgaaagaatgtgtgcttgtattgtaa
gatttgtacatattcctcattggcaaattttaaatgtataaaaagaccaa
ggcctattcgtgatcatggatatagatcatggaagtgttagcaaatgaac
agcacaatatataaatgagatgtttcttcttaaactaagtaggtttggac
tagcatttcaaattaagatcatgtaaacagcatattaaatgatttccccc
cccaaaataggattattataatacgcaaaatcattgcaaagaaatttaat
atccagttttaaggaaagtactctgtagaggaaggaacagagttacttat
ttgtcaaataaaatctgcaacacaaattttaattcaaatattataggtta
gtagtaaagctttatttcctttcattaagcttagcataaagatacatatt
taactgacacgtatatttatggttatttcttcacagttcattaatattag
tcttaaatgcacgaaggaaaattctaattgtttatgtatgaattgtgtgc
ataacaaatgaaaagaattattaaatctattactatgattaacataatat
ggttgatttacagatttagtcaaagcttgatgattgttcctaatttttta
acacttccaaagtctgtctccatactttccaacatcaaaatgaacggcag
aaaaattatgaaaaaaatttgaacacttatggaactttttggacaatact
gtaagatgttactaaacaaaccagtagcaatgtatgattaaatgtcatat
agaagattatttttctctactgaatcaaaacatataataaaaaattcaat
gtgttgagtgtatttacttacatttacatgtacgaaaatatttcagtggg
aaaggtaatgctgaaatatattcatgtgattgattatagtaaataatata
aatgaaacaaagttttaaaatattgtttatggagctcatggttccaggta
agagtattacatgctatcaattataaaggttgagtattacaaaacttcat
tcctcttggatctgggattaattggaaagaaggcattcctctttgcaagg
ctcttaactacacccttatttagttcactattattggttctaaaatacgc
gaggtaaggtatatgaaagagtcgccctctctcgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52145164_52146395
seq2: B6Ng01-112C20.g_67_1305 (reverse)

seq1  CAACAAGAGA---GCTGACT-TTTCATATACTTTA-CTTGCGTATATTAG  45
      ||||| ||||   |  |||| |||||||||| ||| || |||||| ||||
seq2  CAACACGAGAGAGGGCGACTCTTTCATATACCTTACCTCGCGTATTTTAG  50

seq1  AAAACAAATAATAGATGAAACTTTAAAATAGGGTGTAGTT-AGAGCCTTG  94
        ||| |||||||| ||||    ||||  ||||||||||| |||||||||
seq2  --AACCAATAATAG-TGAA---CTAAATAAGGGTGTAGTTAAGAGCCTTG  94

seq1  C-AAGAGGAATG-CTTCTTT-CAATTAAT-CCAGATCAGAGAGAAATG-A  139
      | |||||||||| ||||||| |||||||| |||||||  |||| |||| |
seq2  CAAAGAGGAATGCCTTCTTTCCAATTAATCCCAGATCCAAGAGGAATGAA  144

seq1  GTTTTGTAATACTCAA-CTTTAT-ATTGATAGCATGTAATTACTCTTACC  187
      |||||||||||||||| |||||| ||||||||||||||| ||||||||||
seq2  GTTTTGTAATACTCAACCTTTATAATTGATAGCATGTAA-TACTCTTACC  193

seq1  TGG-ACCATGAGCT-CATAAACAATATTTTAAAATTTTGTTTCATTTATA  235
      ||| |||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TGGAACCATGAGCTCCATAAACAATATTTTAAAACTTTGTTTCATTTATA  243

seq1  TTATTTACTATATTCAATCACATGAATATATTTCAGCATTACCTTTTCCC  285
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TTATTTACTATAATCAATCACATGAATATATTTCAGCATTACC-TTTCCC  292

seq1  ACTGAAATATTTTCGTACATGTAAATGTAAGTAAATACACTCAACACATT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATATTTTCGTACATGTAAATGTAAGTAAATACACTCAACACATT  342

seq1  GAATTTTTTATTATATGTTTTGATTCAGTAGAGAAAAATAATCTTCTATA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTATTATATGTTTTGATTCAGTAGAGAAAAATAATCTTCTATA  392

seq1  TGACATTTAATCATACATTGCTACTGGTTTGTTTAGTAACATCTTACAGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTAATCATACATTGCTACTGGTTTGTTTAGTAACATCTTACAGT  442

seq1  ATTGTCCAAAAAGTTCCATAAGTGTTCAAATTTTTTTCATAATTTTTCTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCAAAAAGTTCCATAAGTGTTCAAATTTTTTTCATAATTTTTCTG  492

seq1  CCGTTCATTTTGATGTTGGAAAGTATGGAGACAGACTTTGGAAGTGTTAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCATTTTGATGTTGGAAAGTATGGAGACAGACTTTGGAAGTGTTAA  542

seq1  AAAATTAGGAACAATCATCAAGCTTTGACTAAATCTGTAAATCAACCATA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGGAACAATCATCAAGCTTTGACTAAATCTGTAAATCAACCATA  592

seq1  TTATGTTAATCATAGTAATAGATTTAATAATTCTTTTCATTTGTTATGCA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAATCATAGTAATAGATTTAATAATTCTTTTCATTTGTTATGCA  642

seq1  CACAATTCATACATAAACAATTAGAATTTTCCTTCGTGCATTTAAGACTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCATACATAAACAATTAGAATTTTCCTTCGTGCATTTAAGACTA  692

seq1  ATATTAATGAACTGTGAAGAAATAACCATAAATATACGTGTCAGTTAAAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATGAACTGTGAAGAAATAACCATAAATATACGTGTCAGTTAAAT  742

seq1  ATGTATCTTTATGCTAAGCTTAATGAAAGGAAATAAAGCTTTACTACTAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTTATGCTAAGCTTAATGAAAGGAAATAAAGCTTTACTACTAA  792

seq1  CCTATAATATTTGAATTAAAATTTGTGTTGCAGATTTTATTTGACAAATA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATATTTGAATTAAAATTTGTGTTGCAGATTTTATTTGACAAATA  842

seq1  AGTAACTCTGTTCCTTCCTCTACAGAGTACTTTCCTTAAAACTGGATATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCTGTTCCTTCCTCTACAGAGTACTTTCCTTAAAACTGGATATT  892

seq1  AAATTTCTTTGCAATGATTTTGCGTATTATAATAATCCTATTTTGGGGGG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTTTGCAATGATTTTGCGTATTATAATAATCCTATTTTGGGGGG  942

seq1  GGAAATCATTTAATATGCTGTTTACATGATCTTAATTTGAAATGCTAGTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCATTTAATATGCTGTTTACATGATCTTAATTTGAAATGCTAGTC  992

seq1  CAAACCTACTTAGTTTAAGAAGAAACATCTCATTTATATATTGTGCTGTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTACTTAGTTTAAGAAGAAACATCTCATTTATATATTGTGCTGTT  1042

seq1  CATTTGCTAACACTTCCATGATCTATATCCATGATCACGAATAGGCCTTG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTAACACTTCCATGATCTATATCCATGATCACGAATAGGCCTTG  1092

seq1  GTCTTTTTATACATTTAAAATTTGCCAATGAGGAATATGTACAAATCTTA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTATACATTTAAAATTTGCCAATGAGGAATATGTACAAATCTTA  1142

seq1  CAATACAAGCACACATTCTTTCAACAGGCTGGGAGATTGATACTGTAAAA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAAGCACACATTCTTTCAACAGGCTGGGAGATTGATACTGTAAAA  1192

seq1  TCAGAATAGTATCTTATTTGAGTATTCTAGAAAATGTCCTGGAATTC  1232
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATAGTATCTTATTTGAGTATTCTAGAAAATGTCCTGGAATTC  1239