BAC Information

Click to search

BAC

Clone NameB6Ng01-112J06
Chromosome4 (Build37)8 (Build37)
Map Location 136,994,673 - 136,995,63211,477,482 - 11,477,746
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3
Downstream gene1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J06.bB6Ng01-112J06.g
ACCDH918606DH918607
length960957
definitionDH918606|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J06, 5' end.DH918607|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(136,994,673 - 136,995,632)(11,477,482 - 11,477,746)
sequence
gaattcaggtttgcctcagccacatagtgagttcacagtcaccacagaac
gcttgagatgctgaaacaaacaccttccctctgatatccgggccatgccg
gcatcgaaccctcgtgtgcttcatcgaagacccctgcatagcctcagggg
tctgacctgcctagagacaacaggcgatgaagacaaagcagacatataga
cgcagcctgggttggatggctgcgctctcagatgaggaagtcccaacacc
ctgacagctcaatgtgcttatcatgtagatttgaacagaggcaggggagt
ggcatacagctggactcattactcacagatgaacaaggaggtgggtgggg
tttatggtatacagctggatcaagaagacaagagttagccaacttccata
ggagcagtctctatagggggcagccaggcagtaaacttccaaggaagcaa
gctaccagagacatattctgcacaatctatcaacatccacactcagacca
gaagggaaagcgctacgattctcctatgggtctgaggcctgggtccttga
catgggtggctcatgccaacaacacaaactcaggacttcacacactcagg
acttcctctactccccatattccctaatactgtctgcctatctcatgctc
ctcccaccccagggccatcctccccaataaaacgtttgctgtggggtcaa
gttgtgacctccccagaactccttgttgaaatcctatcccacgtcccaag
ctagaagtccaggggcttgttgggtaatgacgtagcccattgccgaggtg
atcaacttagatacaggactgggcctgtggctcagttggtagagtgctcg
cttttggaagatttgattcccaacacacatgtagctgtgtgtgctgactc
tgcctataaccctacgctgtgaaaacaggaagaaggactaagaactgaaa
gtgatcctga
gaattctctgtgaatgactgttttgccagcatgtttatacctcacatgtg
tgcctggtacccacagaagtcagaagagggcatgagagtccctggaactg
gagttacaggctagttactatgtgcctgctgggaactctgaaactaacac
acacttttaaacactctgccttttttttttttggtttttcgagacagggt
ttctctgtgtagccctggctgtcctggaactcactctataaacaaggctg
gcctcgaactcagaaatccgactgcctctgcctcccaagtgctgggatta
aaggcgtgcgccaccacagcctggctttttttttttaattattattatta
tttttttaaattttactttttagtctatggactggagagatggctcagtg
gaagagtacctgctgttcttctagagaacccggggttcaattcctgacac
ccacatggctgtacagctccctataactcctgtcccaggggatccaatgg
aagcatcaggcaggcccatgatacacagacatgaatgtaggctagctatg
catacacataaaataagaaaattttttggtttttttaagacagggtttct
ctgtatagccctggttgtcctggaactcactttgtagaccaggctggcct
cgaactcagaaatccacctgccttttcctcccaagtgctgggattaaagg
catgcgccaccatgccctgcataagaatgtttaaaagatttatatatgct
tatttctttatcatcatttatttatttatctatttatttatagtttttga
gacagggtttctctgtgtagtcctggctgccctggagcttgctctataga
cgaggctggcttcaaactcacagagatccacctgcttctgcctcccaagt
tgatgtgtctgtgcctgtgcctgtatgtgtgtatctctgtgtgtgtgtat
agtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136994673_136995632
seq2: B6Ng01-112J06.b_49_1008

seq1  GAATTCAGGTTTGCCTCAGCCACATAGTGAGTTCACAGTCACCACAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTGCCTCAGCCACATAGTGAGTTCACAGTCACCACAGAAC  50

seq1  GCTTGAGATGCTGAAACAAACACCTTCCCTCTGATATCCGGGCCATGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGATGCTGAAACAAACACCTTCCCTCTGATATCCGGGCCATGCCG  100

seq1  GCATCGAACCCTCGTGTGCTTCATCGAAGACCCCTGCATAGCCTCAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAACCCTCGTGTGCTTCATCGAAGACCCCTGCATAGCCTCAGGGG  150

seq1  TCTGACCTGCCTAGAGACAACAGGCGATGAAGACAAAGCAGACATATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGCCTAGAGACAACAGGCGATGAAGACAAAGCAGACATATAGA  200

seq1  CGCAGCCTGGGTTGGATGGCTGCGCTCTCAGATGAGGAAGTCCCAACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCTGGGTTGGATGGCTGCGCTCTCAGATGAGGAAGTCCCAACACC  250

seq1  CTGACAGCTCAATGTGCTTATCATGTAGATTTGAACAGAGGCAGGGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCTCAATGTGCTTATCATGTAGATTTGAACAGAGGCAGGGGAGT  300

seq1  GGCATACAGCTGGACTCATTACTCACAGATGAACAAGGAGGTGGGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAGCTGGACTCATTACTCACAGATGAACAAGGAGGTGGGTGGGG  350

seq1  TTTATGGTATACAGCTGGATCAAGAAGACAAGAGTTAGCCAACTTCCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTATACAGCTGGATCAAGAAGACAAGAGTTAGCCAACTTCCATA  400

seq1  GGAGCAGTCTCTATAGGGGGCAGCCAGGCAGTAAACTTCCAAGGAAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTCTCTATAGGGGGCAGCCAGGCAGTAAACTTCCAAGGAAGCAA  450

seq1  GCTACCAGAGACATATTCTGCACAATCTATCAACATCCACACTCAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAGAGACATATTCTGCACAATCTATCAACATCCACACTCAGACCA  500

seq1  GAAGGGAAAGCGCTACGATTCTCCTATGGGTCTGAGGCCTGGGTCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAAGCGCTACGATTCTCCTATGGGTCTGAGGCCTGGGTCCTTGA  550

seq1  CATGGGTGGCTCATGCCAACAACACAAACTCAGGACTTCACACACTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGGCTCATGCCAACAACACAAACTCAGGACTTCACACACTCAGG  600

seq1  ACTTCCTCTACTCCCCATATTCCCTAATACTGTCTGCCTATCTCATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCTACTCCCCATATTCCCTAATACTGTCTGCCTATCTCATGCTC  650

seq1  CTCCCACCCCAGGGCCATCCTCCCCAATAAAACGTTTGCTGTGGGGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCAGGGCCATCCTCCCCAATAAAACGTTTGCTGTGGGGTCAA  700

seq1  GTTGTGACCTCCCCAGAACTCCTTGTTGAAATCCTATCCCACGTCCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACCTCCCCAGAACTCCTTGTTGAAATCCTATCCCACGTCCCAAG  750

seq1  CTAGAAGTCCAGGGGCTTGTTGGGTAATGACGTAGCCCATTGCCGAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTCCAGGGGCTTGTTGGGTAATGACGTAGCCCATTGCCGAGGTG  800

seq1  ATCAACTTAGATACAGGACTGGGCCTGTGGCTCAGTTGGTAGAGTGCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTAGATACAGGACTGGGCCTGTGGCTCAGTTGGTAGAGTGCTCG  850

seq1  CTTTTTGGTAGATTTGA-TCCCAACACACATGTAGCTGTGTGTGCTGACT  899
      | |||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  C-TTTTGGAAGATTTGATTCCCAACACACATGTAGCTGTGTGTGCTGACT  899

seq1  CCTGCCTATAACCCTACGCTGGGAAAACAGGAAG-AGGACCAAGAACTGA  948
       |||||||||||||||||||| |||||||||||| ||||| |||||||||
seq2  -CTGCCTATAACCCTACGCTGTGAAAACAGGAAGAAGGACTAAGAACTGA  948

seq1  AGGTGATTCTGA  960
      | ||||| ||||
seq2  AAGTGATCCTGA  960

seq1: chr8_11477482_11477746
seq2: B6Ng01-112J06.g_639_831

seq1  TTTTTTGG-TTTTTCAAGAC-GGGTTTCTCTGTATAGCCCTGGCTGTCCT  48
      |||||||| ||||| ||||| |||||||||||||||||||||| ||||||
seq2  TTTTTTGGTTTTTTTAAGACAGGGTTTCTCTGTATAGCCCTGGTTGTCCT  50

seq1  GGAACTCACTCTGTAGACCAGGGTGGCCTCGAACTCAGAAATCCTCCTGC  98
      |||||||||| ||||||||||| ||||||||||||||||||||| |||||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGC  100

seq1  CTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACACTTTACA  148
      || | ||||||||||||||||||||||||| ||||||||||     | | 
seq2  CTTTTCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCA-----TGCC  145

seq1  CAACATAAAAAGTCAGAACTTGGGAGTTTCATACATTGGAAACCTCTCTC  198
      |  ||||| ||              |||| | | |||             
seq2  CTGCATAAGAA-------------TGTTTAAAAGATT-------------  169

seq1  CCTGAAACTATACCATACTATTTCCGGGTTCGTTTGTTTCACTTAAAGTA  248
              ||||      |||                             
seq2  --------TATA------TAT-----------------------------  176

seq1  TCTTATTTCTTTATCAT  265
       ||||||||||||||||
seq2  GCTTATTTCTTTATCAT  193