BAC Information

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BAC

Clone NameB6Ng01-113E15
Chromosome8 (Build37)
Map Location 102,454,497 - 102,628,711
singlet/doubletdoublet
Overlap geneLOC100042069, LOC436054
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113E15.bB6Ng01-113E15.g
ACCDH919122DH919123
length988858
definitionDH919122|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E15, 5' end.DH919123|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,627,709 - 102,628,711)(102,454,497 - 102,455,092)
sequence
gaattccttctgtcccttgcagggggaaatctctgcccactgggttctgg
gattccagacatttgcttgacctgggaccaggctgtctgtgcacagccta
ccaccccagagtttctagtcacatttcaatatgataaagattagcctgga
cttcacagccacacaaagatttctttgtgtattccctttgtggcagaggt
cagcctggtatatatttgcataagtaagtggaaccctccagacatgctcc
agggtttacctctaagcttctaagtctttgttcaggcagaggatgataat
ctttttcttttcttttcttttcttttcttttcttttcttttcttttcttt
tcttttcttttctttttcttttcttttcttttctttttctttttttttta
aagtcaaagaattgactctatttattatcttttcatttcttatagtccaa
ccctaactgatttaggtttagttttgcctctataattatgtcaggggaag
actctgagaagagatttattgtaattatatctggaagagtgaaagtttgg
aacatttttcattaatattattactactgttagtttaattttatatagtg
ttaatgctttctattaattttaaacaaatctacctttgatttactagatt
ataaataggagtcattgaataattttctgttccattattgttgttcaggt
atccttatgtatgcaataagtgagctattattaatcagtagatgttgatc
cagatatgccaacccatagggatttctaggtgaacaatctaaatttggtt
tactgataccaatttcatgtgaaggtgtctaaaacactatctttggaaga
cctttttcctcaagataaacatttgtcttatttaaaaatactttagaaat
cgatgtgtatgggatggacacatttacaatggccacagtgtggaagtcag
agactttttaagctcagtttctcatctttatgagggat
gaattcttgacattggagagtcatttatatttcagagtttggtgttattt
gttcaaattaagattatgccctggttctcccctcttaaagtatttaactt
atttttttcattttgcaggagcccacagttgagagactttaaacttattt
aaaatgtatttttagatagattaaatgtttaaaaaatactttagattctg
gctatttgagttttggactaatgctggacatataaaatttaaaatacttt
ttatcgtgatgttgacattaatgtgtgatcttggggattaacaagaaagg
aatggttgtggcttaacattgatgttttgtatatcaagttgctaagagtc
gtttaccccagttacttttatgtcaacttgatgcaagatgtagtcttctg
agaagggggaagctcaactgagaaattgtctccagaagatcaggagttag
gtaagcttgttgggtgttttaattagtgatagttgtgtgaggatctgccc
attttgggtagtgctaccctctggtgggaagctcttgattctataagaaa
agagaatgatctagttaggagaagcaagcttcttaacagcactcctccac
gcctctacttcagtttctgcctccaggttgctgctctgtttgattttctt
cttttggcttcctcatggactgatttggaaaccaaacaaccacttttctt
tctaggttgcttgtggtcatcctgtttttaccacagcaagagaaatgcta
acaaagacagaaattttggtactccttctttcccaaagttgtgtccctca
atgcaagcctgctttacacttcaacatcagctgcttctttattaaggagt
gtaggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102627709_102628711
seq2: B6Ng01-113E15.b_49_1036 (reverse)

seq1  ATCCCTCATAAAAGAATGAGAAAACTGAGCCCTAAAAAAGGTCCTCTGAC  50
      ||||||||||||   ||||| ||||||||  || ||||||   |||||||
seq2  ATCCCTCATAAA--GATGAG-AAACTGAG--CTTAAAAAG--TCTCTGAC  43

seq1  TTCCACACCTGTGGCCATTGTAAATGTGTTCCATCCCATACACATTCGAA  100
      ||||||| |||||||||||||||||||| ||||||||||||||| ||| |
seq2  TTCCACA-CTGTGGCCATTGTAAATGTG-TCCATCCCATACACA-TCG-A  89

seq1  TTTCTAAAAGTATTTTTTAAATTAAGACAAATGTTTATCTTGAGGAAAAA  150
      ||||| |||||||||||  || ||||||||||||||||||||||| ||||
seq2  TTTCT-AAAGTATTTTT--AAATAAGACAAATGTTTATCTTGAGG-AAAA  135

seq1  AGGTCTTCCAAAGATAGTGTTTTAGACACCTTCACATGAAATTGGTATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCCAAAGATAGTGTTTTAGACACCTTCACATGAAATTGGTATCA  185

seq1  GTAAACCAAATTTAGATTGTTCACCTAGAAATCCCTATGGGTTGGCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCAAATTTAGATTGTTCACCTAGAAATCCCTATGGGTTGGCATAT  235

seq1  CTGGATCAACATCTACTGATTAATAATAGCTCACTTATTGCATACATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCAACATCTACTGATTAATAATAGCTCACTTATTGCATACATAAG  285

seq1  GATACCTGAACAACAATAATGGAACAGAAAATTATTCAATGACTCCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTGAACAACAATAATGGAACAGAAAATTATTCAATGACTCCTATT  335

seq1  TATAATCTAGTAAATCAAAGGTAGATTTGTTTAAAATTAATAGAAAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTAGTAAATCAAAGGTAGATTTGTTTAAAATTAATAGAAAGCAT  385

seq1  TAACACTATATAAAATTAAACTAACAGTAGTAATAATATTAATGAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTATATAAAATTAAACTAACAGTAGTAATAATATTAATGAAAAAT  435

seq1  GTTCCAAACTTTCACTCTTCCAGATATAATTACAATAAATCTCTTCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAACTTTCACTCTTCCAGATATAATTACAATAAATCTCTTCTCAG  485

seq1  AGTCTTCCCCTGACATAATTATAGAGGCAAAACTAAACCTAAATCAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCCCTGACATAATTATAGAGGCAAAACTAAACCTAAATCAGTTA  535

seq1  GGGTTGGACTATAAGAAATGAAAAGATAATAAATAGAGTCAATTCTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGACTATAAGAAATGAAAAGATAATAAATAGAGTCAATTCTTTGA  585

seq1  CTTTAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAAGAAAAAGAAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAAAAAGAAAAAGAAAAGAAAAGAAAAGAAAAAGAAAAGAAA  635

seq1  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAA  685

seq1  AAGATTATCATCCTCTGCCTGAACAAAGACTTAGAAGCTTAGAGGTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATCATCCTCTGCCTGAACAAAGACTTAGAAGCTTAGAGGTAAAC  735

seq1  CCTGGAGCATGTCTGGAGGGTTCCACTTACTTATGCAAATATATACCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCATGTCTGGAGGGTTCCACTTACTTATGCAAATATATACCAGG  785

seq1  CTGACCTCTGCCACAAAGGGAATACACAAAGAAATCTTTGTGTGGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGCCACAAAGGGAATACACAAAGAAATCTTTGTGTGGCTGTG  835

seq1  AAGTCCAGGCTAATCTTTATCATATTGAAATGTGACTAGAAACTCTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGGCTAATCTTTATCATATTGAAATGTGACTAGAAACTCTGGGG  885

seq1  TGGTAGGCTGTGCACAGACAGCCTGGTCCCAGGTCAAGCAAATGTCTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCTGTGCACAGACAGCCTGGTCCCAGGTCAAGCAAATGTCTGGA  935

seq1  ATCCCAGAACCCAGTGGGCAGAGATTTCCCCCTGCAAGGGACAGAAGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAACCCAGTGGGCAGAGATTTCCCCCTGCAAGGGACAGAAGGAA  985

seq1  TTC  1003
      |||
seq2  TTC  988

seq1: chr8_102454497_102455092
seq2: B6Ng01-113E15.g_327_925

seq1  TGTTGACATTAATGTGTGATCTTGGGGATTAACAAGAAAGGAATGGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACATTAATGTGTGATCTTGGGGATTAACAAGAAAGGAATGGTTGT  50

seq1  GGCTTAACATTGATGTTTTGTATATCAAGTTGCTAAGAGTCGTTTACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACATTGATGTTTTGTATATCAAGTTGCTAAGAGTCGTTTACCCC  100

seq1  AGTTACTTTTATGTCAACTTGATGCAAGATGTAGTCTTCTGAGAAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTTTATGTCAACTTGATGCAAGATGTAGTCTTCTGAGAAGGGGG  150

seq1  AAGCTCAACTGAGAAATTGTCTCCAGAAGATCAGGAGTTAGGTAAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAACTGAGAAATTGTCTCCAGAAGATCAGGAGTTAGGTAAGCTTG  200

seq1  TTGGGTGTTTTAATTAGTGATAGTTGTGTGAGGATCTGCCCATTTTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTTTTAATTAGTGATAGTTGTGTGAGGATCTGCCCATTTTGGGT  250

seq1  AGTGCTACCCTCTGGTGGGAAGCTCTTGATTCTATAAGAAAAGAGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTACCCTCTGGTGGGAAGCTCTTGATTCTATAAGAAAAGAGAATGA  300

seq1  TCTAGTTAGGAGAAGCAAGCTTCTTAACAGCACTCCTCCACGCCTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTAGGAGAAGCAAGCTTCTTAACAGCACTCCTCCACGCCTCTACT  350

seq1  TCAGTTTCTGCCTCCAGGTTGCTGCTCTGTTTGA-TTTCTTCTTTTGGCT  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGTTTCTGCCTCCAGGTTGCTGCTCTGTTTGATTTTCTTCTTTTGGCT  400

seq1  TCCTCATGGACTGATTTGGAAACCAAACAACCACTTTTCTTTCTAGGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGGACTGATTTGGAAACCAAACAACCACTTTTCTTTCTAGGTTG  450

seq1  CTTGTGGTCATCCTG-TTTTACCACAGCAAGAGAAAATGCTAACAAAGAC  498
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  CTTGTGGTCATCCTGTTTTTACCACAGCAAGAG-AAATGCTAACAAAGAC  499

seq1  AGAAATTTTGGTACTCCTTCTTACCCAAAGTTGTGT-CCTCAATGCAAGC  547
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  AGAAATTTTGGTACTCCTTCTTTCCCAAAGTTGTGTCCCTCAATGCAAGC  549

seq1  CTGCTTTTACACTTCAGCATCAGCTGC-TCTTTATTAAGGAGTG-AGGAC  595
      |||| ||||||||||| |||||||||| |||||||||||||||| |||||
seq2  CTGC-TTTACACTTCAACATCAGCTGCTTCTTTATTAAGGAGTGTAGGAC  598

seq1  A  596
      |
seq2  A  599