BAC Information

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BAC

Clone NameB6Ng01-113F06
Chromosome8 (Build37)
Map Location 3,602,865 - 3,604,024
singlet/doubletsinglet
Overlap gene2310057J16Rik
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik
Downstream geneXab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113F06.bB6Ng01-113F06.g
ACCDH919152DH919153
length1,1061,140
definitionDH919152|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F06, 5' end.DH919153|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcatacttctctggctgtgaaatga
gttccttggtcagaagcaatactatgtggaataccatgacgatagataag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtaccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagaggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgaatgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttggagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcagtgaataatcgtacatccggccatttcttcttacaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggtagtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagaaaccaggc
tctattcttctcctcttcggtcagtgatcataagggaacaccccatgagg
ctatagccgcatgcttggcagcagatgcatgtaacagagtagaaaccata
ggcattgagcaacttctcatgtactgctggtgcttcaggactgctctgcc
gatcactatttacccttcattgaataatagaactgctgctggccacatcc
tcacct
gaattccagtccagccaggattacacagtgagacccagtctcaaacaaaa
caaaacaaaacaaagaagactccttggatgataccaagaagtagcaccaa
ctgctaatatttggtcatttcattttaatttttaaattcaagttatcatt
cttatatgtacgggagcacatttgccttaatgcatgtgtagaggtccaga
gagaacaacttgcagaagctagttctctctggttaccgtgcaggtcccca
gtactgaacgcaggtcatcaggcttggaggcaagtgcccttaacctgttg
agccatctcattggtccaaaagaaactgcaaactgtattcacagtactgg
caattgaacccaaggcctcacatatgctaggcaagtagtgcattgctgag
ccatcccagaagttcagccagccatttctggaaacctagcataaccagac
acataatgacccatcagtgactcacttgatgacattgtagaggttgtctc
agacaccagccaacccccagatcagtggcttccccctgcacagtgaccat
ttactgtccctccacaggctccctgaagtcctctccatcaatgtctcaca
tggaggctcttggcaaagcctggaaccgtcagcttaggtgagtgcctcat
cggggccctgtggccttggaagagggattgagctgatcagggcatggcag
aggcctgtcccaggggctgacccctccctctggccgcccagccgtcccct
ctcccaggctgtgtcgttcagcactccctttggcctggacagcgatgtgg
attgtcgtcatgggagatcctgttcctgctccgctccgtcagctcagaca
gtctgggttcttctacgtcctgtgtcaacatcatcccggaattctgctca
gccagccccagaatctggaacctacccacgattgaagaaggcctgcagat
cattcacagtgctgagcccgactgctccttgatgggctgctgatggcagt
ttctacctcaatctcctgagggtctctactaccacactcttcccctaccc
ttccgaagagctcaagcgctgctgatatgttcacaggtgcttctattatc
caccctgagaaacctcaaatctttctgctaacaggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_3602865_3604024
seq2: B6Ng01-113F06.g_67_1206

seq1  GAATTCCAGTCCAGCCAGGATTACACAGTGAGACCCAGTCTCAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCAGCCAGGATTACACAGTGAGACCCAGTCTCAAACAAAA  50

seq1  CAAAACAAAACAAAGAAGACTCCTTGGATGATACCAAGAAGTAGCACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAAAGAAGACTCCTTGGATGATACCAAGAAGTAGCACCAA  100

seq1  CTGCTAATATTTGGTCATTTCATTTTAATTTTTAAATTCAAGTTATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAATATTTGGTCATTTCATTTTAATTTTTAAATTCAAGTTATCATT  150

seq1  CTTATATGTACGGGAGCACATTTGCCTTAATGCATGTGTAGAGGTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGTACGGGAGCACATTTGCCTTAATGCATGTGTAGAGGTCCAGA  200

seq1  GAGAACAACTTGCAGAAGCTAGTTCTCTCTGGTTACCGTGCAGGTCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAACTTGCAGAAGCTAGTTCTCTCTGGTTACCGTGCAGGTCCCCA  250

seq1  GTACTGAACGCAGGTCATCAGGCTTGGAGGCAAGTGCCCTTAACCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAACGCAGGTCATCAGGCTTGGAGGCAAGTGCCCTTAACCTGTTG  300

seq1  AGCCATCTCATTGGTCCAAAAGAAACTGCAAACTGTATTCACAGTACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCATTGGTCCAAAAGAAACTGCAAACTGTATTCACAGTACTGG  350

seq1  CAATTGAACCCAAGGCCTCACATATGCTAGGCAAGTAGTGCATTGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAACCCAAGGCCTCACATATGCTAGGCAAGTAGTGCATTGCTGAG  400

seq1  CCATCCCAGAAGTTCAGCCAGCCATTTCTGGAAACCTAGCATAACCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGAAGTTCAGCCAGCCATTTCTGGAAACCTAGCATAACCAGAC  450

seq1  ACATAATGACCCATCAGTGACTCACTTGATGACATTGTAGAGGTTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGACCCATCAGTGACTCACTTGATGACATTGTAGAGGTTGTCTC  500

seq1  AGACACCAGCCAACCCCCAGATCAGTGGCTTCCCCCTGCACAGTGACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCAGCCAACCCCCAGATCAGTGGCTTCCCCCTGCACAGTGACCAT  550

seq1  TTACTGTCCCTCCACAGGCTCCCTGAAGTCCTCTCCATCAATGTCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCCCTCCACAGGCTCCCTGAAGTCCTCTCCATCAATGTCTCACA  600

seq1  TGGAGGCTCTTGGCAAAGCCTGGAACCGTCAGCTTAGGTGAGTGCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTCTTGGCAAAGCCTGGAACCGTCAGCTTAGGTGAGTGCCTCAT  650

seq1  CGGGGCCCTGTGGCCTTGGAAGAGGGATTGAGCTGATCAGGGCATGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCCTGTGGCCTTGGAAGAGGGATTGAGCTGATCAGGGCATGGCAG  700

seq1  AGGCCTGTCCCAGGGGCTGACCCCTCCCTCTGGCCGCCCAGCCGTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTCCCAGGGGCTGACCCCTCCCTCTGGCCGCCCAGCCGTCCCCT  750

seq1  CTCCCAGGCTGTGTCGTTCAGCACTCCCTTTGGCCTGGACAGCGATGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGCTGTGTCGTTCAGCACTCCCTTTGGCCTGGACAGCGATGTGG  800

seq1  A-TGTCGTCATGGGAGATCCTG-TCCTGCTCCGCTCCGTCAGCTCAGACA  848
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGTCGTCATGGGAGATCCTGTTCCTGCTCCGCTCCGTCAGCTCAGACA  850

seq1  GTCTGGG-TCCTCCACGTCCTGTGTCAACATCATCCCGGAATTCTGCTCA  897
      ||||||| || || ||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTTCTTCTACGTCCTGTGTCAACATCATCCCGGAATTCTGCTCA  900

seq1  GCCAGCCCCAGAATCTGGAGACCTACCCACGATTGAAGAGGCCCTGCAGA  947
      ||||||||||||||||||| ||||||||||||||||||| | ||||||||
seq2  GCCAGCCCCAGAATCTGGA-ACCTACCCACGATTGAAGAAGGCCTGCAGA  949

seq1  TCATTCACAGTGCTGAGCCCCGACTGCTCCCTGATGGGGCTGCTGATGGC  997
      ||||||||||||||||| |||||||||||| |||| ||||||||||||||
seq2  TCATTCACAGTGCTGAG-CCCGACTGCTCCTTGAT-GGGCTGCTGATGGC  997

seq1  AGTTTCTACCTCCATTCTCCTGAGGGTCTCTCCAAACCACCACTCTCCCC  1047
      ||||||||||| || |||||||||||||||| |  |||| |||||| |||
seq2  AGTTTCTACCT-CAATCTCCTGAGGGTCTCTAC-TACCA-CACTCTTCCC  1044

seq1  CTACCCTCCCGAAGGAGCCTCAAAGCCGCTGTCTGATAGGCTCAACAAGG  1097
      ||||||| ||||| ||| |||||   ||||| |||||| | |||   |||
seq2  CTACCCTTCCGAA-GAG-CTCAA--GCGCTG-CTGATATGTTCA--CAGG  1087

seq1  CGCCTATCTATATATCACACCCTGAGAACCCTTCAAAATCATCTCCCTGC  1147
       ||   ||||| |||| ||||||||||| || ||||    ||||  ||||
seq2  TGC--TTCTAT-TATC-CACCCTGAGAAACC-TCAA----ATCTTTCTGC  1128

seq1  TCAACAGGAGAGA  1160
      | |||||||||||
seq2  T-AACAGGAGAGA  1140