BAC Information

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BAC

Clone NameB6Ng01-113H03
Chromosome12 (Build37)8 (Build37)
Map Location 32,631,616 - 32,631,84645,399,297 - 45,399,952
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H03.bB6Ng01-113H03.g
ACCDH919240DH919241
length939659
definitionDH919240|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H03, 5' end.DH919241|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(45,399,297 - 45,399,952)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtatcttttgccttacagaagttttgcaatttta
tgaggtcccatttatcgattctcgatcttgcagcacaagccattgctgtt
ctattcaggaattttccccctgtgcccatatcttcgaggctttcccccac
tttctcctctatgaatttcactgtttctggttttatgtggaattccttga
tccacttagatttgaccttagtacaaggagataagatataagatacaatt
tgcaaaacacatgaatctcaagaagagcgaacaccaaagtgtggacactt
tgtaccttcttagaattgggaacaaaacacccatggaaggagttacagag
acaaagtttggagctgagacaaaaggatggaccatctagagactgccata
cccagggatccatccgataatcagcctccaaacgctgacaccattgcata
cactagcaagattttgctgaaaggaccctgatatagctgtctcttgtgag
gttactccagggcctagccaacacagaagtgaatactcacagtcagctat
tggatggatcacagggcccccaatggaggagctagagaatgtacccaagg
agctaaagggatctgcaaccctataggtggaacaacaatatgaactaacc
agtacctgggagctcatatctctagctgcatatgtatcagaagatggcct
agttggccatcagtggaaagagaggcccattggtcttgcaacctttatat
gcctcagtacaggggaatgccagggccaagaagtgggag
gaattctcagagatccagccaggatagcaaggtaacaacaagcccaagct
gctttcaaccagggacagcataagtgtaactgctggtgagcaaagaaaca
gttgttgctccccttggtaaaagtcagcagttcctgaagttttggcttgt
tttctgtttgtttgtgtgtgtgtttgtttgtttgtttttgactccttctc
attccaacccagtcaccctctaatgaagggaatgcccttgtctacactat
ttctgaatgtcaaaactgacgcttttctgaattgccaaaaactgaaaatg
gaatgacagaaaataaaggatgcattatacaaatgatataatgtgtacct
cacactcacttaagtactaaattggagagttgggtgtgtggtggtggttg
ccatatttgagaaaatattctttactttaaacagttactatatacatcta
tctattcattgataaatttttacatgtatacaatgaattattttcgcatc
catctcctttccccacaacttccctaggatgctttgctcaaaaccttcat
atcctcttttttttcttttttttttttaatgacccattaagtacaattag
tgtttgtccatattttggatgggtgtgaggtcacttctggagcatggtct
accctacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-113H03.b_712_987 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGGTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| |||||||||||||||||||||                ||||
seq2  GCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      ||||||||| ||||||||||| | |||||||   ||||||||| ||||||
seq2  TGATACATATGCAGCTAGAGATATGAGCTCC-CAGGTACTGGTTAGTTCA  149

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  199

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
       ||||||| |||||||||||||| ||||||||||| ||||||||||||||
seq2  ATTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATCCAATAGCTGAC  248

seq1  TGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||| || |||||||||||| |||||
seq2  TGTGAGTATTCACTTCTGTGTTGGCTAG  276

seq1: chr8_45399297_45399952
seq2: B6Ng01-113H03.g_69_727

seq1  GAATTCTCAGAGATCCAGCCAGGATAGCAAGGTAACAACAAGCCCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGATCCAGCCAGGATAGCAAGGTAACAACAAGCCCAAGCT  50

seq1  GCTTTCAACCAGGGACAGCATAAGTGTAACTGCTGGTGAGCAAAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAACCAGGGACAGCATAAGTGTAACTGCTGGTGAGCAAAGAAACA  100

seq1  GTTGTTGCTCCCCTTGGTAAAAGTCAGCAGTTCCTGAAGTTTTGGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCTCCCCTTGGTAAAAGTCAGCAGTTCCTGAAGTTTTGGCTTGT  150

seq1  TTTCTGTTTGTTTGTGTGTGTGTTTGTTTGTTTGTTTTTGACTCCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTGTTTGTGTGTGTGTTTGTTTGTTTGTTTTTGACTCCTTCTC  200

seq1  ATTCCAACCCAGTCACCCTCTAATGAAGGGAATGCCCTTGTCTACACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACCCAGTCACCCTCTAATGAAGGGAATGCCCTTGTCTACACTAT  250

seq1  TTCTGAATGTCAAAACTGACGCTTTTCTGAATTGCCAAAAACTGAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATGTCAAAACTGACGCTTTTCTGAATTGCCAAAAACTGAAAATG  300

seq1  GAATGACAGAAAATAAAGGATGCATTATACAAATGATATAATGTGTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACAGAAAATAAAGGATGCATTATACAAATGATATAATGTGTACCT  350

seq1  CACACTCACTTAAGTACTAAATTGGAGAGTTGGGTGTGTGGTGGTGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACTTAAGTACTAAATTGGAGAGTTGGGTGTGTGGTGGTGGTTG  400

seq1  CCATATTTGAGAAAATATTCTTTACTTTAAACAGTTACTATATACATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTGAGAAAATATTCTTTACTTTAAACAGTTACTATATACATCTA  450

seq1  TCTATTCATTGATAAATTTTTACATGTATACAATGAATTATTTTCGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATTGATAAATTTTTACATGTATACAATGAATTATTTTCGCATC  500

seq1  CATCTCCTTTCCCCACAACTTCCCTAGGATGC-TTGCTCAAAACCTTCAT  549
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATCTCCTTTCCCCACAACTTCCCTAGGATGCTTTGCTCAAAACCTTCAT  550

seq1  ATCCTCTTTTTTTTC-TTTTTTTTTTTAATGACCCATTAAGTACAATTAG  598
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTTTTTTCTTTTTTTTTTTTAATGACCCATTAAGTACAATTAG  600

seq1  TG-TTGTCCATA-TGTGGATGGGTGTGAGGTCACTCACTGGAGCAAGGTC  646
      || ||||||||| | ||||||||||||||||||||  |||||||| ||||
seq2  TGTTTGTCCATATTTTGGATGGGTGTGAGGTCACT-TCTGGAGCATGGTC  649

seq1  AACCCTACCA  656
       |||||||||
seq2  TACCCTACCA  659