BAC Information

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BAC

Clone NameB6Ng01-113M02
Chromosome6 (Build37)8 (Build37)
Map Location 128,791,277 - 128,791,52192,277,609 - 92,278,782
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861, Klrb1c, LOC100043862, Klrb1d
Downstream geneLOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113M02.bB6Ng01-113M02.g
ACCDH919468DH919469
length2131,173
definitionDH919468|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M02, 5' end.DH919469|Mus musculus domesticus DNA, BAC clone: B6Ng01-113M02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,791,277 - 128,791,521)(92,277,609 - 92,278,782)
sequence
tcccagaagtctctgcatctggctaagttctccctgttatctacaataaa
ctttctcctccaccacacctaggagcagtcatgtgcttcttctctttttt
ctttccttctctctctctctctctctctctctctctctctctctctctct
ctctctctctccctctccgtctccctctccgcatgcatacaaagaaaaaa
aaaaaaaaaaaaa
gaattcacacctgaagaaaggctaccgctggcatcaccactgaacaccct
gggttggaaagcagggtggaaatcttgcctctcctacttgcaaaactctg
cagtcactaacagttctctctcttcagttttttctctctttttaaagatt
tgtttatttttatttatgtgttcctgtgcataccttgcatgtgctcctgt
gtttacacacatacagataatgctggcagtcagagagggcattgaaccta
gagttacaggcagttatgagatgcctgctgtgggatgcctgggaattgag
ctctcttcaagtaagagctcttaatctctccagaaaactttcagttttct
gatttgtcaaagtgggtgtaacaatcaaatctatctctcaaggctgttcg
gggaatctctgcagacaatggctggcattgatcaaatgcttctatgggtt
agagattggtaccttaaccatctcgtccaggaaggggtaagaatgtgaaa
ggagtccatcttcctgaaggaagcatttccagcatcacacacagaacctg
tttgtgttgtaccaaaaatgcctctctgatcatatgccagcccctgccca
gatcctaaacttggagatgcagaagtggattccaaaattggaaatgcaga
aatggatccctaacttggagatgctcagggaagcagagtggctgccttat
gctgtacctgcccaatataataacagaaaaggcctagatccacacctgtt
tgtaccatgactcatggcaatgccactacaacatgatgcctggaaagaga
aatttctacaaattaattgtcaatttctaaattgaggtccctgtgtcagt
attgagaacaaaactcaaaggcatccaatgaaaatatcactttaataggg
gatttttgtttgttttttgtttttgtttttttccgggataaagaaacaga
gagagctttttgtcaatgagtctcttgcccagcctcctccaagcttgatt
ttagtgtaaacgtggcatgcttgcccttggatgagtgacgtaatgagaac
cacagcctcactggtccaaggggagagaaaagagatgccatgaattctca
agccgagcccttccttatcacgctcctgtttaagaaagctagtaaagcag
agagaaataaagtgacaagcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_128791277_128791521
seq2: B6Ng01-113M02.b_205_265 (reverse)

seq1  TTTTTTTTTTTTTTTTTTTCCAAGACCCCAGTCAAGGAACATGGCAGGGC  50
      ||||||||||||||||||||   |    ||  |   ||    || ||   
seq2  TTTTTTTTTTTTTTTTTTTCTTTGTATGCATGCGGAGA----GGGAGACG  46

seq1  TAGAGTAATTTCAGAGAGAGATGGTAAAGGAATATGGCCAACCTAAAACA  100
       ||||       ||||||||                              
seq2  GAGAG-----GGAGAGAGAG------------------------------  61

seq1  GATGGAGGGTCTCAAGTTGTTTCTTAGGGGCTGGGCTGCTTGCCTGAGAA  150
                                                        
seq2  --------------------------------------------------  61

seq1  GTGAGGTTCTGAGGTTGACACAGAGAGCATGCATGCTTGTACAGAGAGGG  200
                                                        
seq2  --------------------------------------------------  61

seq1  GGGGGAGAGGGAGGGGGAGAGAGAGAGAGAGAGAGGGAGAGAGAG  245
                                                   
seq2  ---------------------------------------------  61

seq1: chr8_92277609_92278782
seq2: B6Ng01-113M02.g_70_1242

seq1  GAATTCACACCTGAAGAAAGGCTACCGCTGGCATCACCACTGAACACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCTGAAGAAAGGCTACCGCTGGCATCACCACTGAACACCCT  50

seq1  GGGTTGGAAAGCAGGGTGGAAATCTTGCCTCTCCTACTTGCAAAACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGAAAGCAGGGTGGAAATCTTGCCTCTCCTACTTGCAAAACTCTG  100

seq1  CAGTCACTAACAGTTCTCTCTCTTCAGTTTTTTCTCTCTTTTTAAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTAACAGTTCTCTCTCTTCAGTTTTTTCTCTCTTTTTAAAGATT  150

seq1  TGTTTATTTTTATTTATGTGTTCCTGTGCATACCTTGCATGTGCTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTTATTTATGTGTTCCTGTGCATACCTTGCATGTGCTCCTGT  200

seq1  GTTTACACACATACAGATAATGCTGGCAGTCAGAGAGGGCATTGAACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACACACATACAGATAATGCTGGCAGTCAGAGAGGGCATTGAACCTA  250

seq1  GAGTTACAGGCAGTTATGAGATGCCTGCTGTGGGATGCCTGGGAATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGGCAGTTATGAGATGCCTGCTGTGGGATGCCTGGGAATTGAG  300

seq1  CTCTCTTCAAGTAAGAGCTCTTAATCTCTCCAGAAAACTTTCAGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCAAGTAAGAGCTCTTAATCTCTCCAGAAAACTTTCAGTTTTCT  350

seq1  GATTTGTCAAAGTGGGTGTAACAATCAAATCTATCTCTCAAGGCTGTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCAAAGTGGGTGTAACAATCAAATCTATCTCTCAAGGCTGTTCG  400

seq1  GGGAATCTCTGCAGACAATGGCTGGCATTGATCAAATGCTTCTATGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTCTGCAGACAATGGCTGGCATTGATCAAATGCTTCTATGGGTT  450

seq1  AGAGATTGGTACCTTAACCATCTCGTCCAGGAAGGGGTAAGAATGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGGTACCTTAACCATCTCGTCCAGGAAGGGGTAAGAATGTGAAA  500

seq1  GGAGTCCATCTTCCTGAAGGAAGCATTTCCAGCATCACACACAGAACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCATCTTCCTGAAGGAAGCATTTCCAGCATCACACACAGAACCTG  550

seq1  TTTGTGTTGTACCAAAAATGCCTCTCTGATCATATGCCAGCCCCTGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTGTACCAAAAATGCCTCTCTGATCATATGCCAGCCCCTGCCCA  600

seq1  GATCCTAAACTTGGAGATGCAGAAGTGGATTCCAAAATTGGAAATGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAAACTTGGAGATGCAGAAGTGGATTCCAAAATTGGAAATGCAGA  650

seq1  AATGGATCCCTAACTTGGAGATGCTCAGGGAAGCAGAGTGGCTGCCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCCCTAACTTGGAGATGCTCAGGGAAGCAGAGTGGCTGCCTTAT  700

seq1  GCTGTACCTGCCCAATATAATAACAGAAAAGGCCTAGATCCACACCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACCTGCCCAATATAATAACAGAAAAGGCCTAGATCCACACCTGTT  750

seq1  TGTACCATGACTCATGGCAATGCCACTACAACATGATGCCTGGAAAGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATGACTCATGGCAATGCCACTACAACATGATGCCTGGAAAGAGA  800

seq1  AATTTCTACAAATTAATTGTCAATTTCTAAATTGAGGTCCCTGTGTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTACAAATTAATTGTCAATTTCTAAATTGAGGTCCCTGTGTCAGT  850

seq1  ATTGAGAACAAAACTCAAAGGCATCCAATGAAAATATCACTTTAATAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAACAAAACTCAAAGGCATCCAATGAAAATATCACTTTAATAGGG  900

seq1  GATTTTTGTTTTGTTTTTTTGTTTTTTGTTTTTTTCCGGGATAAAGGAAA  950
      |||||||| ||||||||||   ||||||||||||||||||||||| ||||
seq2  GATTTTTG-TTTGTTTTTT--GTTTTTGTTTTTTTCCGGGATAAA-GAAA  946

seq1  CAGAGAAGAGCTTTTTGTCAATGAGTCTC-TGCCCAGCCTCCTCCAAGGC  999
      ||||| ||||||||||||||||||||||| ||||||||||||||||| ||
seq2  CAGAG-AGAGCTTTTTGTCAATGAGTCTCTTGCCCAGCCTCCTCCAA-GC  994

seq1  TTGATTTTAGTGTTAAACGT-GCATGCTTGCCCTTGGATGAGGTTGACGT  1048
      |||||||||||| ||||||| |||||||||||||||||||||  ||||||
seq2  TTGATTTTAGTG-TAAACGTGGCATGCTTGCCCTTGGATGAG--TGACGT  1041

seq1  AATGAGAACAACAG-CTCACTGGTCCAAGGGGAGAGAAAAGAGATG-CAT  1096
      ||||||||| |||| ||||||||||||||||||||||||||||||| |||
seq2  AATGAGAACCACAGCCTCACTGGTCCAAGGGGAGAGAAAAGAGATGCCAT  1091

seq1  G-ATTCTCAAGCAGA-CCCTTCCTTATCA-GCT-CTGTTGAAGAAAGCGA  1142
      | |||||||||| || ||||||||||||| ||| ||||| |||||||| |
seq2  GAATTCTCAAGCCGAGCCCTTCCTTATCACGCTCCTGTTTAAGAAAGCTA  1141

seq1  GAAAAGCA-AGAGAAATAAA-TGACAAAAGCAGA  1174
      | |||||| ||||||||||| ||||  |||||||
seq2  GTAAAGCAGAGAGAAATAAAGTGAC--AAGCAGA  1173