BAC Information

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BAC

Clone NameB6Ng01-114C10
Chromosome8 (Build37)
Map Location 114,094,807 - 114,249,048
singlet/doubletdoublet
Overlap geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
Downstream geneCfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114C10.bB6Ng01-114C10.g
ACCDH919749DH919750
length1,1151,017
definitionDH919749|Mus musculus domesticus DNA, BAC clone: B6Ng01-114C10, 5' end.DH919750|Mus musculus domesticus DNA, BAC clone: B6Ng01-114C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,247,923 - 114,249,048)(114,094,807 - 114,095,831)
sequence
ctaattgattccatgaaggagctggagtccgtaggatgctggtgggtttt
gatgtttggttggtttagctttggcttgattgcaggttgtgtaccaccag
cctggccaggggatggttttacttcttgagtctaagtagccaaggacaca
cagcaagtacccagagcctagtcccatttctaagttcagatctctctctg
tcttcagatccaggaaacttaggagggaccttgtagctcacccataatta
atgttcacccgatggccagaagagtgcatctaaccttcttgagtgcccaa
tgggggtctcagtcagctttgctgaggcacacagtcttctgataactcta
agaggacagatgtcctagccacacccagaccagattcttgccttcttcct
gccctccgccttgtctaaggcccgctcctgggaaggaggcagtaagagca
gtgctgctcgggtcacagtggccattttggagcttcccactcagtcctgt
gccctctgccctgtctaccatcctgttgtcctcctgcttcaagtcacaca
gtcccagcacaggctacttggctcctgggccacatgaagtgcgttctggg
agtatctccccattatagaaaggccattgtagtacccatttcttatagca
tctgggacagttgacaggagcgctaataaaggtgaggggtgctcttcttc
ctttgcctaatgcctctgtttttcctgttgcatcttcctcaagccccaga
agcactcacagtagtaatatgtctgggatctgcttctggataattgtgac
aactcaggagggaagggctgacctgtacctcctcattgctcccctatgaa
cactcactcctgcctgcaccacttccttaacaccataaacacccgaagga
ccatgtggcctgaccctctgtgtccgtacttgctggtactgaacatccat
cagcagctcttgatcatttgtttcccttggatgacctctctgtctactgt
aggtttttgttggtctgtctttcttctttgattggatgaactctccaaat
tcctactacctgctttgccagcactaggcctttggattgaaatttggatt
ggtagtctgggtgcc
gaattcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccgagtgctgggattaaaggcgtacaccaccacacccggctt
tcaaaggggttttaggacttgaatttattcttctctgtgagctttcagag
gtaactatagttgatatctttctcattatttagaaagccatagaatcttg
actctcaaattattattaactctgattacagaggcattacaaattatttt
ttaatggctggagattggtgaagggatggaatggtggcaagtagtgagga
gagtgagaccgaaaggtgtagctcagaatatctttctctgcttactcttt
agttcttttttttttttaagatttatttatttattatatgtaagtacgcc
atagctgtcttcagactccccagaagagattcagttatcattacagatgg
ttgtgagccaccatgtggttgctgggatttgaactcagggccttcggaag
agcagtaggtgctcttaaccactgagccatctctccagccctcttcagtt
cttaagggcatcagcgtatcagtgtttaaaacgtgagaagcatggttttg
tttttgttttgttttgtttcagtgcgattaaacctgagaaaattattaca
ttttgaaatgaaagacctcatggtttattcctttgaagctgtagtctcta
gggtttatgatcttttagtatatattttaaaggccagtgttgtatttcca
gcaacaaatggaaagaactgtgtgcgttcctttagctacataaaaaaagt
ccacataaaagaagtttgcttttgccttaagtttcagagcttttagtcca
tagtcatttgccccattcccttgggcctatggcaaggcagtgactatcgg
agatgtgtgcagagaagaaaggatttctattacagcatcagaaagcaaga
agggcagaggatgggccaggaaactataaacagtgttccttcctaaaagg
tttataccgggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114247923_114249048
seq2: B6Ng01-114C10.b_60_1174 (reverse)

seq1  GGCACCACAGACTACCAATCAGAAATCAAATACAAAAGGCCTAGTGCTGG  50
      |||||| |||||||||||||  || |  ||| | |||||||||||||| |
seq2  GGCACC-CAGACTACCAATCCAAATTTCAAT-CCAAAGGCCTAGTGCT-G  47

seq1  GCAAAGCAGGTTAGTAGGAATTTGGAGGAGTTCATACAATCAAAGAGGAA  100
      |||||||||| ||||||||||||||| |||||||| |||||||||| | |
seq2  GCAAAGCAGG-TAGTAGGAATTTGGA-GAGTTCATCCAATCAAAGAAG-A  94

seq1  AAGACAAGACCAACAGAAAACCTACAGTAGACAGAGAGGTCATCCAAGGG  150
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGAC-AGACCAACA-AAAACCTACAGTAGACAGAGAGGTCATCCAAGGG  142

seq1  AAAACAAATGATCAAGAGCTGCTGATGGATGTTCAGTACCAGCAAGTACG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAACAAATGATCAAGAGCTGCTGATGGATGTTCAGTACCAGCAAGTACG  191

seq1  GACACAGAGGGGTCAGGCCACATGGTCCTTCGGGTGTTTATGGTGTTTAA  250
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GACACAGA-GGGTCAGGCCACATGGTCCTTCGGGTGTTTATGGTG-TTAA  239

seq1  GGAAGTGGTGCAGGCAGGAGTGAGTGTTCATAGGGGAGCAATGAGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGTGCAGGCAGGAGTGAGTGTTCATAGGGGAGCAATGAGGAGGT  289

seq1  ACAGGTCAGCCCTTCCCTCCTGAGTTGTCACAATTATCCAGAAGCAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAGCCCTTCCCTCCTGAGTTGTCACAATTATCCAGAAGCAGATC  339

seq1  CCAGACATATTACTACTGTGAGTGCTTCTGGGGCTTGAGGAAGATGCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATATTACTACTGTGAGTGCTTCTGGGGCTTGAGGAAGATGCAAC  389

seq1  AGGAAAAACAGAGGCATTAGGCAAAGGAAGAAGAGCACCCCTCACCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAACAGAGGCATTAGGCAAAGGAAGAAGAGCACCCCTCACCTTTA  439

seq1  TTAGCGCTCCTGTCAACTGTCCCAGATGCTATAAGAAATGGGTACTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGCTCCTGTCAACTGTCCCAGATGCTATAAGAAATGGGTACTACAA  489

seq1  TGGCCTTTCTATAATGGGGAGATACTCCCAGAACGCACTTCATGTGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCTATAATGGGGAGATACTCCCAGAACGCACTTCATGTGGCCC  539

seq1  AGGAGCCAAGTAGCCTGTGCTGGGACTGTGTGACTTGAAGCAGGAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCAAGTAGCCTGTGCTGGGACTGTGTGACTTGAAGCAGGAGGACA  589

seq1  ACAGGATGGTAGACAGGGCAGAGGGCACAGGACTGAGTGGGAAGCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGGTAGACAGGGCAGAGGGCACAGGACTGAGTGGGAAGCTCCAA  639

seq1  AATGGCCACTGTGACCCGAGCAGCACTGCTCTTACTGCCTCCTTCCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCACTGTGACCCGAGCAGCACTGCTCTTACTGCCTCCTTCCCAGG  689

seq1  AGCGGGCCTTAGACAAGGCGGAGGGCAGGAAGAAGGCAAGAATCTGGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGCCTTAGACAAGGCGGAGGGCAGGAAGAAGGCAAGAATCTGGTCT  739

seq1  GGGTGTGGCTAGGACATCTGTCCTCTTAGAGTTATCAGAAGACTGTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCTAGGACATCTGTCCTCTTAGAGTTATCAGAAGACTGTGTGC  789

seq1  CTCAGCAAAGCTGACTGAGACCCCCATTGGGCACTCAAGAAGGTTAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAAGCTGACTGAGACCCCCATTGGGCACTCAAGAAGGTTAGATG  839

seq1  CACTCTTCTGGCCATCGGGTGAACATTAATTATGGGTGAGCTACAAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTCTGGCCATCGGGTGAACATTAATTATGGGTGAGCTACAAGGTC  889

seq1  CCTCCTAAGTTTCCTGGATCTGAAGACAGAGAGAGATCTGAACTTAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAAGTTTCCTGGATCTGAAGACAGAGAGAGATCTGAACTTAGAAA  939

seq1  TGGGACTAGGCTCTGGGTACTTGCTGTGTGTCCTTGGCTACTTAGACTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTAGGCTCTGGGTACTTGCTGTGTGTCCTTGGCTACTTAGACTCA  989

seq1  AGAAGTAAAACCATCCCCTGGCCAGGCTGGTGGTACACAACCTGCAATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAAACCATCCCCTGGCCAGGCTGGTGGTACACAACCTGCAATCA  1039

seq1  AGCCAAAGCTAAACCAACCAAACATCAAAACCCACCAGCATCCTACGGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCTAAACCAACCAAACATCAAAACCCACCAGCATCCTACGGAC  1089

seq1  TCCAGCTCCTTCATGGAATCAATTAG  1126
      ||||||||||||||||||||||||||
seq2  TCCAGCTCCTTCATGGAATCAATTAG  1115

seq1: chr8_114094807_114095831
seq2: B6Ng01-114C10.g_66_1082

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  50

seq1  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTACACCACCACACCCGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTACACCACCACACCCGGCTT  100

seq1  TCAAAGGGGTTTTAGGACTTGAATTTATTCTTCTCTGTGAGCTTTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGGTTTTAGGACTTGAATTTATTCTTCTCTGTGAGCTTTCAGAG  150

seq1  GTAACTATAGTTGATATCTTTCTCATTATTTAGAAAGCCATAGAATCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATAGTTGATATCTTTCTCATTATTTAGAAAGCCATAGAATCTTG  200

seq1  ACTCTCAAATTATTATTAACTCTGATTACAGAGGCATTACAAATTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAATTATTATTAACTCTGATTACAGAGGCATTACAAATTATTTT  250

seq1  TTAATGGCTGGAGATTGGTGAAGGGATGGAATGGTGGCAAGTAGTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGCTGGAGATTGGTGAAGGGATGGAATGGTGGCAAGTAGTGAGGA  300

seq1  GAGTGAGACCGAAAGGTGTAGCTCAGAATATCTTTCTCTGCTTACTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGACCGAAAGGTGTAGCTCAGAATATCTTTCTCTGCTTACTCTTT  350

seq1  AGTTCTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACGCC  400

seq1  ATAGCTGTCTTCAGACTCCCCAGAAGAGATTCAGTTATCATTACAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTCTTCAGACTCCCCAGAAGAGATTCAGTTATCATTACAGATGG  450

seq1  TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGGCCTTCGGAAG  500

seq1  AGCAGTAGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTCTTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTCTTCAGTT  550

seq1  CTTAAGGGCATCAGCGTATCAGTGTTTAAAACGTGAGAAGCATGGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGCATCAGCGTATCAGTGTTTAAAACGTGAGAAGCATGGTTTTG  600

seq1  -TTTTGTTTTGTTTTGTTTCAGTGCGATTAAACCTGAGAAAATTATTACA  649
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTGTTTCAGTGCGATTAAACCTGAGAAAATTATTACA  650

seq1  TTTTGAAATGAAAGACCTCATGGTTTATTCCTTTGAAGCTGTAGTCTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATGAAAGACCTCATGGTTTATTCCTTTGAAGCTGTAGTCTCTA  700

seq1  GGGTTTATGATCTTTTAGTATATATTTTAAAGGCCAGTGTTGTATTTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTATGATCTTTTAGTATATATTTTAAAGGCCAGTGTTGTATTTCCA  750

seq1  GCAACAAATGGAAAGAACTGTGTGCGTTCCTTTAGCTACAT-AAAAAAGT  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCAACAAATGGAAAGAACTGTGTGCGTTCCTTTAGCTACATAAAAAAAGT  800

seq1  CCACATAAAAAGAAGTTTGCTTTTGCCTTAAGTTTCAGAGCTTTTAGTCC  848
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAT-AAAAGAAGTTTGCTTTTGCCTTAAGTTTCAGAGCTTTTAGTCC  849

seq1  ATAGTCATTTTGCCCCATTCCCTTTGGGCCTATGGCAAGGCAGTGACTAA  898
      ||||||| |||||||||||||| ||||||||||||||||||||||||| |
seq2  ATAGTCA-TTTGCCCCATTCCC-TTGGGCCTATGGCAAGGCAGTGACT-A  896

seq1  TCGGAGATGTGTGCAGTAGAGAAAGGTATTCCTATTACAGCATCCAGAAA  948
      ||||||||||||||||   ||||||| ||| |||||||||||| ||||||
seq2  TCGGAGATGTGTGCAGAGAAGAAAGG-ATTTCTATTACAGCAT-CAGAAA  944

seq1  GCAAAGAAAGGGCAAGAGGATGGGCCAGGAAACCAATAAACCAGTGTTCC  998
      ||||   |||||| |||||||||||||||||| | ||||| |||||||||
seq2  GCAA--GAAGGGC-AGAGGATGGGCCAGGAAA-CTATAAA-CAGTGTTCC  989

seq1  TTCCTTAAAAGGTTTATTACGTGTGTG--  1025
      |||| ||||||||||||  || |||||  
seq2  TTCC-TAAAAGGTTTATACCGGGTGTGTG  1017