BAC Information

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BAC

Clone NameB6Ng01-116D04
Chromosome8 (Build37)
Map Location 55,546,236 - 55,688,595
singlet/doubletdoublet
Overlap geneSpcs3, Asb5, Spata4
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneWdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116D04.bB6Ng01-116D04.g
ACCDH921255DH921256
length1,0401,174
definitionDH921255|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D04, 5' end.DH921256|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,546,236 - 55,547,180)(55,687,410 - 55,688,595)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
ttctggagtccaccttcttgagttcttatatatattggatattagtcccc
tatccgatttgggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgctttgcagaagctttgcaattttat
gaggtcccatttatcgattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtacccatatcttcaaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggatcaattcgca
ttcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtggattcatctctgggtcttcaattctgttccattggt
ctacttgtctgtcactataccagtaccatgcagttttgatcacaattgtc
ttttttaactccattttttaaaaccatcatgttagccaggcagtggtggt
acatgcctttaatcccagcacttgggaggcagaggcaggtggatttctga
gttccaagccagcctggtctacagagtgagttccagagctatacagagaa
accctgtctccaaaaaccaaaaaaaaaaaaaatcatgtttttgtttttat
tgttgttgttgttaaatatagtccttaaaatgctctagaccaagaagtaa
ctttcctacaaattcttacacttgattttagccaaggtcaaatacgtcca
gtttgattactactcaagagtactccttaaataactcttcaaaagattct
ccctaaccaggaatggtggcatgagctcaagacagcctggctactgagag
gccaccaggtttgtctgagcttgagtgaactccagagaaa
gaattcaaagagtagccttccattttctagataccagagagaaaatgact
ctttccttcagaaaatatagttcaaaggaaagaacattctaatgacacac
atgtttcttggatagttgatatgctacagaaatgttcagttttctatgtg
tgaaataagggcaaatatatgataaacataaaaaaataggccagaatgga
gctaatgatgaagacagaacagcactttcacttactatcctacctgcctg
ggacaatggataagcaatatgacaagagtttaaaatgacttaagatgact
ctgggcaagcctttggaaacctgcccttccatccgcaaatcaacaaacat
actgtcgataaaaaagaaagccatccactccagtgatcataaatcttttt
actgcatggttttctctcatttcagcttaggagcagccttggtgatttca
gaagcactcacctgtctccagggaaggcttacctggattcagttttctgc
ttaattttctttgcagcatttgcaaaaggatgaggaattctatcttgagt
tcattgctgagtacattaggattgcttagtagttccgacaacctaatgtt
attcttaatagattttgatactgtattcctaggaaccaggggcaaacgca
tttggtaaatatagtctgtgaaattagcgagatcatcctggatacttcta
attctgaaaataagaaacaaaatattgttggcaaactatgtcttagtagt
gagccttatgtcatcaaaagtttacgttaaattgtgctgttggaaaattt
caaactacttactcttgatgtgttagtaaagtgtaaatctcctgtatcag
tatttcaggtaccccagccttacagtgaattgttccatggattagttctt
taggtagtttaaacttcttttcgctagaaactttaataatagaaagaagt
attcatcatcagaagttctagaaaaaaatcaagtatatgaatttacttta
actaactttcatttgaactacattttctatgttatcaacattcactattt
cttcaagaaagccacttttaataacactctaattgtcataactaaattta
ataggttatttaagcttgtaataaatggaacaactagagttgaactaatc
agtatttctagactggacaagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55546236_55547180
seq2: B6Ng01-116D04.b_145_1085

seq1  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  50

seq1  TTTTGTCTTATTGACAGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACAGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTA  100

seq1  TGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTT  150

seq1  CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTAC  200

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA  250

seq1  TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCGC  300

seq1  ATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAAT  350

seq1  GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT  400

seq1  GACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCATTGG  450

seq1  TCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTGT  500

seq1  CTTTTTTAACTCCATTTTTTAAAACCATCATGTTAGCCAGGCAGTGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAACTCCATTTTTTAAAACCATCATGTTAGCCAGGCAGTGGTGG  550

seq1  TACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTG  600

seq1  AGTTCCAAGCCAGCCTGGTCTACAGAGTGAGTTCCAGAGCTATACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGCCAGCCTGGTCTACAGAGTGAGTTCCAGAGCTATACAGAGA  650

seq1  AACCCTGTCTCCAAAAACCAAAAAAAAAAAAAATCATGTTTTTGTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCCAAAAACCAAAAAAAAAAAAAATCATGTTTTTGTTTTTA  700

seq1  TTGTTGTTGTTGTTAAATATAGTCCTTAAAATGCTCTAGACCAAGAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTAAATATAGTCCTTAAAATGCTCTAGACCAAGAAGTA  750

seq1  ACTTTCCTACAAATTCTTACACTTGATTTTAGCCAAGGTCAAATACGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTACAAATTCTTACACTTGATTTTAGCCAAGGTCAAATACGTCC  800

seq1  AGTTTGATTACTACTCAAGAGTACTCCTTAAATAACTCTTCAAAAGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATTACTACTCAAGAGTACTCCTTAAATAACTCTTCAAAAGATTC  850

seq1  TCCCTAACCAGGAATGGTGGCCATGAGCTCAAGGACAGCCTGGGCTACTG  900
      |||||||||||||||||||| ||||||||||| |||||||| ||||||||
seq2  TCCCTAACCAGGAATGGTGG-CATGAGCTCAA-GACAGCCT-GGCTACTG  897

seq1  AGAGGCCACCAGGTTTGTCTGAGCTTGAGTGAAACTCCAGAGAAA  945
      ||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAGGCCACCAGGTTTGTCTGAGCTTGAGTG-AACTCCAGAGAAA  941

seq1: chr8_55687410_55688595
seq2: B6Ng01-116D04.g_66_1239 (reverse)

seq1  ACTCTATGTCAAGTCTAGGAAATAACTGATTAGTCAAATTCTAGTTGTTC  50
      ||||| |||| |||||| ||||| ||||||||||  || |||||||||||
seq2  ACTCT-TGTCCAGTCTA-GAAAT-ACTGATTAGTTCAACTCTAGTTGTTC  47

seq1  ATTATATACAAAACTATAAATAAACTATAAAATTTAGTATATGACAATTA  100
        | |||   || || ||||||| |||| ||||||||| |||||||||||
seq2  CATTTATTACAAGCT-TAAATAACCTATTAAATTTAGT-TATGACAATTA  95

seq1  GAGTGGTATATAATAGTGGCTTTCTTGAAGAAATAGTGAATGTTGATAAC  150
      ||||| ||| ||| ||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAT-TAAAAGTGGCTTTCTTGAAGAAATAGTGAATGTTGATAAC  144

seq1  ATAGAAAATGTAGTTCAAATGAAAAGTTAGTTAAAGTAAATTCATAATAC  200
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  ATAGAAAATGTAGTTCAAATG-AAAGTTAGTTAAAGTAAATTCAT-ATAC  192

seq1  TTGATTATTTTTCTAGAACTTCTGATGATGAAATACTTTCTTTCTATTAT  250
      |||||| ||||||||||||||||||||||| ||||| |||||||||||||
seq2  TTGATT-TTTTTCTAGAACTTCTGATGATG-AATAC-TTCTTTCTATTAT  239

seq1  TAAAGTTTCTAGCGAAAAAGAAGTTTAAACTACCTAAAGAACTAATCCAT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTCTAGCG-AAAAGAAGTTTAAACTACCTAAAGAACTAATCCAT  288

seq1  GGAACAATTCACTGTAAGGCTGGGGTACCTGAAATACTGATACAGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATTCACTGTAAGGCTGGGGTACCTGAAATACTGATACAGGAGAT  338

seq1  TTACACTTTACTAACACATCAAGAGTAAGTAGTTTGAAATTTTCCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTACTAACACATCAAGAGTAAGTAGTTTGAAATTTTCCAACAG  388

seq1  CACAATTTAACGTAAACTTTTGATGACATAAGGCTCACTACTAAGACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTAACGTAAACTTTTGATGACATAAGGCTCACTACTAAGACATA  438

seq1  GTTTGCCAACAATATTTTGTTTCTTATTTTCAGAATTAGAAGTATCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCAACAATATTTTGTTTCTTATTTTCAGAATTAGAAGTATCCAGG  488

seq1  ATGATCTCGCTAATTTCACAGACTATATTTACCAAATGCGTTTGCCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCGCTAATTTCACAGACTATATTTACCAAATGCGTTTGCCCCTG  538

seq1  GTTCCTAGGAATACAGTATCAAAATCTATTAAGAATAACATTAGGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTAGGAATACAGTATCAAAATCTATTAAGAATAACATTAGGTTGTC  588

seq1  GGAACTACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACTAAGCAATCCTAATGTACTCAGCAATGAACTCAAGATAGAAT  638

seq1  TCCTCATCCTTTTGCAAATGCTGCAAAGAAAATTAAGCAGAAAACTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCCTTTTGCAAATGCTGCAAAGAAAATTAAGCAGAAAACTGAAT  688

seq1  CCAGGTAAGCCTTCCCTGGAGACAGGTGAGTGCTTCTGAAATCACCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAGCCTTCCCTGGAGACAGGTGAGTGCTTCTGAAATCACCAAGG  738

seq1  CTGCTCCTAAGCTGAAATGAGAGAAAACCATGCAGTAAAAAGATTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTAAGCTGAAATGAGAGAAAACCATGCAGTAAAAAGATTTATGA  788

seq1  TCACTGGAGTGGATGGCTTTCTTTTTTATCGACAGTATGTTTGTTGATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAGTGGATGGCTTTCTTTTTTATCGACAGTATGTTTGTTGATTT  838

seq1  GCGGATGGAAGGGCAGGTTTCCAAAGGCTTGCCCAGAGTCATCTTAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATGGAAGGGCAGGTTTCCAAAGGCTTGCCCAGAGTCATCTTAAGTC  888

seq1  ATTTTAAACTCTTGTCATATTGCTTATCCATTGTCCCAGGCAGGTAGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACTCTTGTCATATTGCTTATCCATTGTCCCAGGCAGGTAGGAT  938

seq1  AGTAAGTGAAAGTGCTGTTCTGTCTTCATCATTAGCTCCATTCTGGCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGAAAGTGCTGTTCTGTCTTCATCATTAGCTCCATTCTGGCCTA  988

seq1  TTTTTTTATGTTTATCATATATTTGCCCTTATTTCACACATAGAAAACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATGTTTATCATATATTTGCCCTTATTTCACACATAGAAAACTG  1038

seq1  AACATTTCTGTAGCATATCAACTATCCAAGAAACATGTGTGTCATTAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTGTAGCATATCAACTATCCAAGAAACATGTGTGTCATTAGAA  1088

seq1  TGTTCTTTCCTTTGAACTATATTTTCTGAAGGAAAGAGTCATTTTCTCTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTCCTTTGAACTATATTTTCTGAAGGAAAGAGTCATTTTCTCTC  1138

seq1  TGGTATCTAGAAAATGGAAGGCTACTCTTTGAATTC  1186
      ||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTAGAAAATGGAAGGCTACTCTTTGAATTC  1174