BAC Information

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BAC

Clone NameB6Ng01-116E04
Chromosome8 (Build37)
Map Location 10,361,409 - 10,548,693
singlet/doubletdoublet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E04.bB6Ng01-116E04.g
ACCDH921302DH921303
length1,135618
definitionDH921302|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E04, 5' end.DH921303|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,361,409 - 10,362,550)(10,548,076 - 10,548,693)
sequence
gaattctgggctaatgagagcaaggtcaccttgactgtaccctcccatgc
caggtgatccctgcgggaattacaagcccgtttatggagggctggagaca
gcgagggcagtgtgtgcgtcccagaattctccgtgacatttaaagtagaa
gcaccatgagaagaaagcctagatcagagagaaggctggcgtaaagaaat
ggggctgagccccctgtgtcactcaccaggacattaatgacatagcccca
gcatgatccagtgagtcagctcagtgaggggggatgggagccactgccac
acctggtagtaaagcttagaagggcaaatcccacccctcctcttttttga
agattacttgtaaataactactcctactccagcagtaaagccccttcaag
gatttgctgaccagagacaatgttatggagtctttggagcctctgggggc
tgatggtgctcctttgtcttctttggagacgtgcttagctcactcccaac
atgctttgcgtcctccagctcatttgtctcaaaggtttattttgaggatg
gcatagaataataattagtgcttagcagccctgatttcttaacaagaact
agtctcattaatttagaaagcaaggtaggagtggttgtccctgaggtgaa
ggctaccaaggcaagtttggggcagaagcaagcttggggaggcatgaagc
atcttgaactgcccactcagagtctgtgcaacacaggggtcaatgctcct
cctcaagaccctccagactcccgaggaggaggaggaggactcccttgctg
gatacaagaaccctgggctgtgactctctagagcaaagttaactgggtct
accaggaacaaaacccaggtgatgtgagtttcccagtgggcagttcaggg
ctcagacctttgaaggtgcttcccaggcaggacagagttctgagtttgta
ataaaaactgtgggagagcctgaggttaaaaaagtgactcgaggactctt
tatgtggcattgtcttatcacgatgtattttggctagagtgaaaggcagc
tccatgaatgcttgtgctggctgtggacctccaagcgatgagccccacta
tggatgtccaatgcagagttctagccttggaccat
gaattcttcccgagacattgtttagatttagtctcttgccttctgtgatg
ctaggaattaaaaaggacagaagcctaaggacccccagcaggaattcaga
gagccaggtctctgtatggccagcaccagtttataccagtgactgggtaa
acactcctggcccagattggcacttttgtcccaagaatggccgctgtggt
atgctgtactgaatctcaagtcaagactgaacagatttcagtccaaactc
taagctctccgctgcgagtggcctggtcccacctcccctgcacggctatt
tctcactagctagtcacaaagagggtttggagtcacagtgtttttatctg
agacaaaaatgctcacgtcgctctgaccgctgtaagagcaagacgtctgt
gagtcacaccatcaggaggctcctcaggaagacattaggatatttttgct
ttgaagtgacagattttagaggattaaacaagattgtcattgatgacttc
caaagctcccattattgttccagttctcaggaactttttcagaaatgtgg
gctgtggaggcagacaaacacaggaacagtggtgtgggtggtatgggggc
tgtattagaatggaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_10361409_10362550
seq2: B6Ng01-116E04.b_45_1179

seq1  GAATTCTGGGCTAATGAGAGCAAGGTCACCTTGACTGTACCCTCCCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTAATGAGAGCAAGGTCACCTTGACTGTACCCTCCCATGC  50

seq1  CAGGTGATCCCTGCGGGAATTACAAGCCCGTTTATGGAGGGCTGGAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATCCCTGCGGGAATTACAAGCCCGTTTATGGAGGGCTGGAGACA  100

seq1  GCGAGGGCAGTGTGTGCGTCCCAGAATTCTCCGTGACATTTAAAGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGGCAGTGTGTGCGTCCCAGAATTCTCCGTGACATTTAAAGTAGAA  150

seq1  GCACCATGAGAAGAAAGCCTAGATCAGAGAGAAGGCTGGCGTAAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGAGAAGAAAGCCTAGATCAGAGAGAAGGCTGGCGTAAAGAAAT  200

seq1  GGGGCTGAGCCCCCTGTGTCACTCACCAGGACATTAATGACATAGCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAGCCCCCTGTGTCACTCACCAGGACATTAATGACATAGCCCCA  250

seq1  GCATGATCCAGTGAGTCAGCTCAGTGAGGGGGGATGGGAGCCACTGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATCCAGTGAGTCAGCTCAGTGAGGGGGGATGGGAGCCACTGCCAC  300

seq1  ACCTGGTAGTAAAGCTTAGAAGGGCAAATCCCACCCCTCCTCTTTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTAGTAAAGCTTAGAAGGGCAAATCCCACCCCTCCTCTTTTTTGA  350

seq1  AGATTACTTGTAAATAACTACTCCTACTCCAGCAGTAAAGCCCCTTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTTGTAAATAACTACTCCTACTCCAGCAGTAAAGCCCCTTCAAG  400

seq1  GATTTGCTGACCAGAGACAATGTTATGGAGTCTTTGGAGCCTCTGGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTGACCAGAGACAATGTTATGGAGTCTTTGGAGCCTCTGGGGGC  450

seq1  TGATGGTGCTCCTTTGTCTTCTTTGGAGACGTGCTTAGCTCACTCCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGCTCCTTTGTCTTCTTTGGAGACGTGCTTAGCTCACTCCCAAC  500

seq1  ATGCTTTGCGTCCTCCAGCTCATTTGTCTCAAAGGTTTATTTTGAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGCGTCCTCCAGCTCATTTGTCTCAAAGGTTTATTTTGAGGATG  550

seq1  GCATAGAATAATAATTAGTGCTTAGCAGCCCTGATTTCTTAACAAGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAATAATAATTAGTGCTTAGCAGCCCTGATTTCTTAACAAGAACT  600

seq1  AGTCTCATTAATTTAGAAAGCAAGGTAGGAGTGGTTGTCCCTGAGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATTAATTTAGAAAGCAAGGTAGGAGTGGTTGTCCCTGAGGTGAA  650

seq1  GGCTACCAAGGCAAGTTTGGGGCAGAAGCAAGCTTGGGGAGGCATGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCAAGGCAAGTTTGGGGCAGAAGCAAGCTTGGGGAGGCATGAAGC  700

seq1  ATCTTGAACTGCCCACTCAGAGTCTGTGCAACACAGGGGTCAATGCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAACTGCCCACTCAGAGTCTGTGCAACACAGGGGTCAATGCTCCT  750

seq1  CCTCAAGACCCTCCAGACTCCCGAGGAGGAGGAGGAGGACTCCCTTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGACCCTCCAGACTCCCGAGGAGGAGGAGGAGGACTCCCTTGCTG  800

seq1  GATACAAGAACCCTGGGCTGTGACTCTCTAGAGCAAAGTTAACTGGGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGAACCCTGGGCTGTGACTCTCTAGAGCAAAGTTAACTGGGTCT  850

seq1  ACCAGGAACAAAACCCAGGTGATGTGAGTTTCCCAGTGGGCAGTTCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAACAAAACCCAGGTGATGTGAGTTTCCCAGTGGGCAGTTCAGGG  900

seq1  CTCAGACCTTTGAA-GTGCTTCCCAGGCAGGACAGAGTTCTGAGTTTGT-  948
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  CTCAGACCTTTGAAGGTGCTTCCCAGGCAGGACAGAGTTCTGAGTTTGTA  950

seq1  ATAAAAACTGTGGAGGAGCCTGAGGTTAAAAAAAGTGACTCGAGGACTCT  998
      |||||||||||||  |||||||||||| ||||||||||||||||||||||
seq2  ATAAAAACTGTGGGAGAGCCTGAGGTT-AAAAAAGTGACTCGAGGACTCT  999

seq1  TTATGTGGCATGTTCTTATCACCGATAGTAATTTTGGCTAGAGTGAAAGG  1048
      |||||||||||  |||||||| |||| || ||||||||||||||||||||
seq2  TTATGTGGCATTGTCTTATCA-CGAT-GT-ATTTTGGCTAGAGTGAAAGG  1046

seq1  CAGCTCAATGAAATGGCTTGTGCTGGCTTGTGACCTCCAAGCGATGAGCC  1098
      |||||| |||||   |||||||||||||   |||||||||||||||||||
seq2  CAGCTCCATGAA--TGCTTGTGCTGGCTGTGGACCTCCAAGCGATGAGCC  1094

seq1  CCACTATTGGTTGTCCAATGCAGAGTGGTCAGCCTTGAAACCAT  1142
      |||||| ||| |||||||||||||||  | |||||||  |||||
seq2  CCACTA-TGGATGTCCAATGCAGAGTTCT-AGCCTTG-GACCAT  1135

seq1: chr8_10548076_10548693
seq2: B6Ng01-116E04.g_66_683 (reverse)

seq1  TACCTCCATTCTAATACAGCCCCCATACCACCCACACCACTGTTCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCATTCTAATACAGCCCCCATACCACCCACACCACTGTTCCTGTG  50

seq1  TTTGTCTGCCTCCACAGCCCACATTTCTGAAAAAGTTCCTGAGAACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGCCTCCACAGCCCACATTTCTGAAAAAGTTCCTGAGAACTGGA  100

seq1  ACAATAATGGGAGCTTTGGAAGTCATCAATGACAATCTTGTTTAATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATGGGAGCTTTGGAAGTCATCAATGACAATCTTGTTTAATCCTC  150

seq1  TAAAATCTGTCACTTCAAAGCAAAAATATCCTAATGTCTTCCTGAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGTCACTTCAAAGCAAAAATATCCTAATGTCTTCCTGAGGAGC  200

seq1  CTCCTGATGGTGTGACTCACAGACGTCTTGCTCTTACAGCGGTCAGAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATGGTGTGACTCACAGACGTCTTGCTCTTACAGCGGTCAGAGCG  250

seq1  ACGTGAGCATTTTTGTCTCAGATAAAAACACTGTGACTCCAAACCCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGAGCATTTTTGTCTCAGATAAAAACACTGTGACTCCAAACCCTCTT  300

seq1  TGTGACTAGCTAGTGAGAAATAGCCGTGCAGGGGAGGTGGGACCAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTAGCTAGTGAGAAATAGCCGTGCAGGGGAGGTGGGACCAGGCCA  350

seq1  CTCGCAGCGGAGAGCTTAGAGTTTGGACTGAAATCTGTTCAGTCTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGCGGAGAGCTTAGAGTTTGGACTGAAATCTGTTCAGTCTTGACT  400

seq1  TGAGATTCAGTACAGCATACCACAGCGGCCATTCTTGGGACAAAAGTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCAGTACAGCATACCACAGCGGCCATTCTTGGGACAAAAGTGCC  450

seq1  AATCTGGGCCAGGAGTGTTTACCCAGTCACTGGTATAAACTGGTGCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGCCAGGAGTGTTTACCCAGTCACTGGTATAAACTGGTGCTGGC  500

seq1  CATACAGAGACCTGGCTCTCTGAATTCCTGCTGGGGGTCCTTAGGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAGACCTGGCTCTCTGAATTCCTGCTGGGGGTCCTTAGGCTTCT  550

seq1  GTCCTTTTTAATTCCTAGCATCACAGAAGGCAAGAGACTAAATCTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTTTAATTCCTAGCATCACAGAAGGCAAGAGACTAAATCTAAACA  600

seq1  ATGTCTCGGGAAGAATTC  618
      ||||||||||||||||||
seq2  ATGTCTCGGGAAGAATTC  618