BAC Information

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BAC

Clone NameB6Ng01-116F02
Chromosome8 (Build37)5 (Build37)
Map Location 39,575,520 - 39,576,10149,979,920 - 49,980,442
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116F02.bB6Ng01-116F02.g
ACCDH921345DH921346
length576466
definitionDH921345|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F02, 5' end.DH921346|Mus musculus domesticus DNA, BAC clone: B6Ng01-116F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,575,520 - 39,576,101)(49,979,920 - 49,980,442)
sequence
cactcctgtccttggagctattggccagtgctatctaatagaggagaaaa
aaatcagttttcttcatggatgcagcacaaggctgagaggctgctgatgt
ttcaacagattatcctaggtttctctcattaccatgctaaagggatttat
gtataggacaatcagcctgtttagtagtatacaaatgggtattttctttg
aaatcttctccagtaacaaataactcaaacttaaagtgaataggagaaac
aatttattaaacatgtccccatcataggttatgctaagtgtttggattag
tttaatttcatataatcaaaaatattccacttgacctacagttatacatg
agaactttaatattcacaaattttatataattttccatagaccccacagc
taaagtttgctttttttctgggtttcttaataagtacaatgtgacttcct
attcatacaacttcttttttgtcctgaaattaggagtgtaggtaacgaac
ccatgaacactcacatgatgggctctatcacagagccatgtttatacctg
tagatttatatatatatgtgtgtgtg
gaattctctgtttagctctgtaccccatttttttattgagtcatttgggt
tttgagtcaggttaacttcttgaattctttatatattttggatattagca
ctctatcagatgcaaggttagtgaagacatttttcccaaactgtaggttg
cagatttgtcctattgaggtgtcttttgccttatagaagcttttctgttt
catgaggtcccatttatcaattattgatcttagagcctgagacattgttg
tacagttcaggaaatttcctcctgcactagtgagttttatttatttacat
ttcaaatgttattccccttcctgttttcccctccacaaaccccctattct
aacctccctccccaagctcctatgagggtgcttccccaccacctcctact
ttcacctgaccgccctaacattcccatacactggagcatcaagccttcac
aggaccaagggtctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39575520_39576101
seq2: B6Ng01-116F02.b_45_626

seq1  GAATTCCACTCCTGTCCTTGGAGCTATTGGCCAGTGCTATCTAATAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCTGTCCTTGGAGCTATTGGCCAGTGCTATCTAATAGAGG  50

seq1  AGAAAAAAATCAGTTTTCTTCATGGATGCAGCACAAGGCTGAGAGGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATCAGTTTTCTTCATGGATGCAGCACAAGGCTGAGAGGCTGC  100

seq1  TGATGTTTCAACAGATTATCCTAGGTTTCTCTCATTACCATGCTAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCAACAGATTATCCTAGGTTTCTCTCATTACCATGCTAAAGGG  150

seq1  ATTTATGTATAGGACAATCAGCCTGTTTAGTAGTATACAAATGGGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTATAGGACAATCAGCCTGTTTAGTAGTATACAAATGGGTATTT  200

seq1  TCTTTGAAATCTTCTCCAGTAACAAATAACTCAAACTTAAAGTGAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAATCTTCTCCAGTAACAAATAACTCAAACTTAAAGTGAATAGG  250

seq1  AGAAACAATTTATTAAACATGTCCCCATCATAGGTTATGCTAAGTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAATTTATTAAACATGTCCCCATCATAGGTTATGCTAAGTGTTTG  300

seq1  GATTAGTTTAATTTCATATAATCAAAAATATTCCACTTGACCTACAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTTAATTTCATATAATCAAAAATATTCCACTTGACCTACAGTTA  350

seq1  TACATGAGAACTTTAATATTCACAAATTTTATATAATTTTCCATAGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGAACTTTAATATTCACAAATTTTATATAATTTTCCATAGACCC  400

seq1  CACAGCTAAAGTTTGCTTTTTTTCTGGGTTTCTTAATAAGTACAATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTAAAGTTTGCTTTTTTTCTGGGTTTCTTAATAAGTACAATGTGA  450

seq1  CTTCCTATTCATACAACTTCTTTTTTGTCCTGAAATTAGGAGTGTAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATTCATACAACTTCTTTTTTGTCCTGAAATTAGGAGTGTAGGTA  500

seq1  ACGAACCCATGAACACTCACATGATGGGCTCTATCACAGAGCCATGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACCCATGAACACTCACATGATGGGCTCTATCACAGAGCCATGTTTA  550

seq1  TACCTGTAGATTTATATATATATGTGTGTGTG  582
      ||||||||||||||||||||||||||||||||
seq2  TACCTGTAGATTTATATATATATGTGTGTGTG  582

seq1: chr5_49979920_49980442
seq2: B6Ng01-116F02.g_350_532 (reverse)

seq1  GGAGAGGCCCTTGGTCCTGTGAAGGCTCCATGCCCCAGTGTAGGGGAATG  50
      |||||  ||||||||||||||||||||  |||| |||||||| |||||||
seq2  GGAGA--CCCTTGGTCCTGTGAAGGCTTGATGCTCCAGTGTATGGGAATG  48

seq1  CGAGGGTGGGGAGGCAGGAGTGGGTGTGTGTGGGGGGGA--CACAATCAT  98
        |||| ||  |||    ||| || |   |||| |||||  |||  ||||
seq2  TTAGGGCGGTCAGGTGAAAGTAGGAG---GTGGTGGGGAAGCACCCTCAT  95

seq1  AGAAGCAGGGAGAGGGGGAATGGAATAAGGGGAATCAATGGA---ATATA  145
      || |||  || ||||| |  | ||||| ||||  |   ||||     | |
seq2  AGGAGCTTGGGGAGGGAGGTTAGAATAGGGGG--TTTGTGGAGGGGAAAA  143

seq1  CAGAAAAGGG-ATAACATTTGAAATGCAAATAAATATAACATCCAATAAA  194
      ||| || ||| ||||||||||||||| ||||||||| |||          
seq2  CAGGAAGGGGAATAACATTTGAAATGTAAATAAATAAAAC----------  183

seq1  AAATAAAAAAATAAATTGCTACCGGGCTAGGGAGATTGCTCAACTGGCTC  244
                                                        
seq2  --------------------------------------------------  183

seq1  ATGGGGAGATGGCTCAACTGGCTCATGGGGAGATGGCTCAACTGGCTCAA  294
                                                        
seq2  --------------------------------------------------  183

seq1  CTGGAAATAAAACTTGCTGTTCAAGCCTGAGGACATGAGTTCCATCCCTG  344
                                                        
seq2  --------------------------------------------------  183

seq1  GAGCTCGCTCACATGGAAGGAGAGTACTGACTCCCAAAAGGTGTACTCTG  394
                                                        
seq2  --------------------------------------------------  183

seq1  ATCTCCACATTCATACTGTGGCATTCACATACACACACACACACAGAGGC  444
                                                        
seq2  --------------------------------------------------  183

seq1  ATACTGGCACACACATGCAACATGCAAGCCTGCACACATGCACGTGCACA  494
                                                        
seq2  --------------------------------------------------  183

seq1  CACACACAGTAATAGTAAATAAATAAAAC  523
                                   
seq2  -----------------------------  183