BAC Information

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BAC

Clone NameB6Ng01-116H02
Chromosome8 (Build37)
Map Location 38,922,225 - 38,923,334
singlet/doubletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116H02.bB6Ng01-116H02.g
ACCDH921440DH921441
length1,1151,177
definitionDH921440|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H02, 5' end.DH921441|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacactgaagtgatgggttagtggcctaaattttatttctagaac
ttttcattgtttcttcttttctgttttttctaaatcatttcatgtctcca
ggtttataccttctttatctccatgtggagaatgtatgaggggaaaaggc
aaacccagctgaggcactcactctgcctgcttgtctttctttttcactct
tcttgcctctgagaggcaagcaagccacttggccttaacttcacctttct
cttatttcttttatataatgtccaagaatttttgttttatttagaaggag
aaataagaaaaaacaaggccgatccatctttttgaacatagtggtattgg
tgaggcctctatttttttttaataaacattgtttagattgaaatgtcaag
aaatattgaaatattttctttgaagaactagcaatatctggaaaataaaa
agaattcaatcagatagtgtttatagtggtgatatttgaaaataatgcat
tttatattaaatcaatgacataggatttgaaatgaaaagttctgaaatag
caaggtcagtgggaatagagtagcccatctgaagtattcatggttggctt
tgtgtctttgaatcaggcatgcactcactgttagtaggagagtctgtgta
gcatctgcagttttgagtctttttctttttttaacctgcggtcggattgg
aagtactttactttaaagtctaaactgtgccatgtaacccagaaaaatgg
agatgtaaagttttgtttgatgtggtctttgtccttaaccttcctcatat
ccattaatcttttatatccaatcactttcactttttttaaaaaagatttt
ggcaatgatagcaatctgagaacataaagtggtttcttcagcccctttgt
gtgcattttttttttatcttctatttatttaattgaagtgagatatacca
gtaattgtctggcactgactgtttttccattaacagcccttcagtgaatt
ctgtatccggtgacaacctcccttttattccttttgagatgttctttatt
taatattattatttaatcagataagctcctccatcctcctgctaatcctc
cattctccttcctgc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccacgtagagactgccatatccaggggatccaccccataat
cagcatccaaacgctgacaccattgtatacactagcaagattttattgaa
aggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaac
acagaagtggatgctcacagtcagcttatggatggatcatagggctccct
aatgggaggagctagagaaagtagccaggagctaaagggatctgcaccct
atagtggacaacatatgagctaaccagtacccggagctctgactctagct
gcatatatatcaagaatggctaatcgccatcatgggaaagagagccattt
ggacttgcaactttatggccagtcatggatgccatgcctaatgtgtcagt
gggtgcgtgtgagaggtagaggcggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38922225_38923334
seq2: B6Ng01-116H02.b_46_1160 (reverse)

seq1  GCAGGA--GAGAATGGAG--------GGAAGCT--------TTATCTGGA  32
      ||||||  ||||||||||        ||| | |        |||||||  
seq2  GCAGGAAGGAGAATGGAGGATTAGCAGGAGGATGGAGGAGCTTATCTG--  48

seq1  TGTAAAATAAATAAATTAAT-TTAAATAAAAGAAACAATCTCAAAAAGAA  81
           | |||||||  |||| |||||| ||||||   ||||||||| || 
seq2  -----ATTAAATAA--TAATATTAAAT-AAAGAA--CATCTCAAAAGGA-  87

seq1  ATAAAAAAGGGAGGTTGTCACGGGATACAGAATTCACCTGAA-GGCTGTT  130
        | ||||||||||||||||| |||||||||||||| ||||| |||||||
seq2  --ATAAAAGGGAGGTTGTCACCGGATACAGAATTCA-CTGAAGGGCTGTT  134

seq1  AATGGAAAAACAGTCAGTGCCAGACAATTACTGGTATATCTCACTTCAAT  180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAACAGTCAGTGCCAGACAATTACTGGTATATCTCACTTCAAT  184

seq1  TAAATAAATAGAAGAT-AAAAAAAAATGCACACAAAGGGGCTGAAGAAAC  229
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAATAAATAGAAGATAAAAAAAAAATGCACACAAAGGGGCTGAAGAAAC  234

seq1  CACTTTATGTTCTCAGATTGCTATCATTGCCAAAATCTTTTTTAAAAAAA  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATGTTCTCAGATTGCTATCATTGCCAAAATCTTTTTTAAAAAAA  284

seq1  GTGAAAGTGATTGGATATAAAAGATTAATGGATATGAGGAAGGTTAAGGA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTGATTGGATATAAAAGATTAATGGATATGAGGAAGGTTAAGGA  334

seq1  CAAAGACCACATCAAACAAAACTTTACATCTCCATTTTTCTGGGTTACAT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCACATCAAACAAAACTTTACATCTCCATTTTTCTGGGTTACAT  384

seq1  GGCACAGTTTAGACTTTAAAGTAAAGTACTTCCAATCCGACCGCAGGTTA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTTTAGACTTTAAAGTAAAGTACTTCCAATCCGACCGCAGGTTA  434

seq1  AAAAAAGAAAAAGACTCAAAACTGCAGATGCTACACAGACTCTCCTACTA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAAGACTCAAAACTGCAGATGCTACACAGACTCTCCTACTA  484

seq1  ACAGTGAGTGCATGCCTGATTCAAAGACACAAAGCCAACCATGAATACTT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGTGCATGCCTGATTCAAAGACACAAAGCCAACCATGAATACTT  534

seq1  CAGATGGGCTACTCTATTCCCACTGACCTTGCTATTTCAGAACTTTTCAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGCTACTCTATTCCCACTGACCTTGCTATTTCAGAACTTTTCAT  584

seq1  TTCAAATCCTATGTCATTGATTTAATATAAAATGCATTATTTTCAAATAT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCCTATGTCATTGATTTAATATAAAATGCATTATTTTCAAATAT  634

seq1  CACCACTATAAACACTATCTGATTGAATTCTTTTTATTTTCCAGATATTG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTATAAACACTATCTGATTGAATTCTTTTTATTTTCCAGATATTG  684

seq1  CTAGTTCTTCAAAGAAAATATTTCAATATTTCTTGACATTTCAATCTAAA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTCAAAGAAAATATTTCAATATTTCTTGACATTTCAATCTAAA  734

seq1  CAATGTTTATTAAAAAAAAATAGAGGCCTCACCAATACCACTATGTTCAA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTATTAAAAAAAAATAGAGGCCTCACCAATACCACTATGTTCAA  784

seq1  AAAGATGGATCGGCCTTGTTTTTTCTTATTTCTCCTTCTAAATAAAACAA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGATCGGCCTTGTTTTTTCTTATTTCTCCTTCTAAATAAAACAA  834

seq1  AAATTCTTGGACATTATATAAAAGAAATAAGAGAAAGGTGAAGTTAAGGC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGGACATTATATAAAAGAAATAAGAGAAAGGTGAAGTTAAGGC  884

seq1  CAAGTGGCTTGCTTGCCTCTCAGAGGCAAGAAGAGTGAAAAAGAAAGACA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCTTGCTTGCCTCTCAGAGGCAAGAAGAGTGAAAAAGAAAGACA  934

seq1  AGCAGGCAGAGTGAGTGCCTCAGCTGGGTTTGCCTTTTCCCCTCATACAT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGAGTGAGTGCCTCAGCTGGGTTTGCCTTTTCCCCTCATACAT  984

seq1  TCTCCACATGGAGATAAAGAAGGTATAAACCTGGAGACATGAAATGATTT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACATGGAGATAAAGAAGGTATAAACCTGGAGACATGAAATGATTT  1034

seq1  AGAAAAAACAGAAAAGAAGAAACAATGAAAAGTTCTAGAAATAAAATTTA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACAGAAAAGAAGAAACAATGAAAAGTTCTAGAAATAAAATTTA  1084

seq1  GGCCACTAACCCATCACTTCAGTGTGAATTC  1110
      |||||||||||||||||||||||||||||||
seq2  GGCCACTAACCCATCACTTCAGTGTGAATTC  1115