BAC Information

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BAC

Clone NameB6Ng01-116M04
Chromosome8 (Build37)
Map Location 65,589,554 - 65,751,660
singlet/doubletdoublet
Overlap geneSpock3
Upstream geneAnxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M04.bB6Ng01-116M04.g
ACCDH921678DH921679
length1,2091,131
definitionDH921678|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M04, 5' end.DH921679|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,589,554 - 65,590,767)(65,750,531 - 65,751,660)
sequence
gaattctagtgccatggttgcatagctatcagtccaatgggaccacactt
tctcacgatagtctgtaaacggttaattacattagactgaggttaaatct
tacccatatattctcctctaaaatagactttgtttatgagaataagaaac
actaaaaggttttgttagttgtcataagatacccaagggaattagcaaag
atgagacaacctttgccaaggagcatcatatgagtatttggacactcata
ttcttgatattcttttggtatattcatatctatctatctatctatctatc
tatctatctatctatcaattgtgtctgtcagggtttataggagacttgaa
cacacagctgcactattctcttcatgcgttaaatggaaagcatccaatat
cttgaagcaggaaaatgtaattttaaaggaaagaggtactaaataaggat
gctatactcttcacattgaatttgaatgttaaaaatatattttatttcat
tgttagtgcgtgtctgtgtgtacatatatttgtataggtttgtgtagtca
caagatcacttcaataggagttcagatgaggatgtcaagtgctctgaaaa
ttgagatgatggtagttgaaaggtaccaacatatccggatgctgaaacca
agctcttgtccactttagggccagtacctactcttaaccacttagccatc
tttttgatgctggtattttagattattattgaaataatttaattttacct
ctgtttttcaagaactctatcattcagtaattgtttttaaagagactttt
tttcaaagaatttaaacaatcaatgtttatttaattaccctgggacacta
ttgtcccttaatctaatgttacataatttagaacagatccaattagtgaa
aactgccatcatttgtccctcttaatattatctgagcacaaaaaaaaaaa
gacttacaatatggctcctagggattattctgtcctttcatttggcacgt
atgggtagcacaaaacatggtgggtgaagagttataataagaaactaact
taaaatgaaatttactgggaaatggagtactaattataattaatatttaa
cagtggtgaatattcccaaaattaaaataaatacttctatatatctcttt
taccaataaatataatgatttctcagtcttagtccagaaattctcttacc
ttgaagaaa
gaattccatcaaagcaaggccctctgagttaacatgattcacgtgcatac
aaaaccacagagactgaaacagcacgcacatggcccacacaggtcggcat
cgagagctttctatatttaagttatggcttccaggctagtgatttacgtg
actccagggcttgcaaaagaatgcgtccttgattcctatgccttctcttg
ggctcattcttttgtttattttgtctaattccaatatgttagctttatct
tattatattttattattattccttagaagcctgtttgtttcctaatgaaa
gatagaaagggagtagatccaaaaatggatggaatacgggaacaaattgg
aagaagttgagggaagagaaacagcaatcaggaaaatcatgtagttttaa
taagaggaaaagatagttgacagagttttataccctcagctggcataatt
ttaaatggagaaaagcttgaagcaaatctcctttttgataatcctattgc
ttaacaatatactcttattgcagctaaatctatgtgtggtgactaaatgt
ctactcttgatcaccaatctaattcatccaaagaatggaaaaaggaagta
ggttattatcaaagttgaagcagctactcttggagataatgaaggacaac
atgtttttgccttttaatttatttagaacttcatttaattgtgaaacaca
agaaaataaaaacttacagctgttttgtgacctctatatttaattaaact
ttatcttctccctttttaatgtgaattttatagtattcatatgagcaatt
ttctgaagcagatagccctgaaaattaaaatgaacttgtcttttgataag
gaacgtggaatgtcaaataccatgcagaagttaagaaatttgaaatcttt
ccctaaaagtcagtgtttgacaaataattaaattactatacaatggcttc
ctgaggccactttctgatttgaaagggatataatgagaaggtaattaaga
tacttgtgtttatgcaagaagaattttggcattaatacctgggaatattg
accctattaagcaattgttgaagaacttgcaggttcctataactgttcac
ccgaaatactaaatgaataaaggagtaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_65589554_65590767
seq2: B6Ng01-116M04.b_45_1253

seq1  GAATTCTAGTGCCATGGTTGCATAGCTATCAGTCCAATGGGACCACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGCCATGGTTGCATAGCTATCAGTCCAATGGGACCACACTT  50

seq1  TCTCACGATAGTCTGTAAACGGTTAATTACATTAGACTGAGGTTAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGATAGTCTGTAAACGGTTAATTACATTAGACTGAGGTTAAATCT  100

seq1  TACCCATATATTCTCCTCTAAAATAGACTTTGTTTATGAGAATAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATATATTCTCCTCTAAAATAGACTTTGTTTATGAGAATAAGAAAC  150

seq1  ACTAAAAGGTTTTGTTAGTTGTCATAAGATACCCAAGGGAATTAGCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGGTTTTGTTAGTTGTCATAAGATACCCAAGGGAATTAGCAAAG  200

seq1  ATGAGACAACCTTTGCCAAGGAGCATCATATGAGTATTTGGACACTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAACCTTTGCCAAGGAGCATCATATGAGTATTTGGACACTCATA  250

seq1  TTCTTGATATTCTTTTGGTATATTCATATCTATCTATCTATCTATCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATATTCTTTTGGTATATTCATATCTATCTATCTATCTATCTATC  300

seq1  TATCTATCTATCTATCAATTGTGTCTGTCAGGGTTTATAGGAGACTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCAATTGTGTCTGTCAGGGTTTATAGGAGACTTGAA  350

seq1  CACACAGCTGCACTATTCTCTTCATGCGTTAAATGGAAAGCATCCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCTGCACTATTCTCTTCATGCGTTAAATGGAAAGCATCCAATAT  400

seq1  CTTGAAGCAGGAAAATGTAATTTTAAAGGAAAGAGGTACTAAATAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCAGGAAAATGTAATTTTAAAGGAAAGAGGTACTAAATAAGGAT  450

seq1  GCTATACTCTTCACATTGAATTTGAATGTTAAAAATATATTTTATTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTCTTCACATTGAATTTGAATGTTAAAAATATATTTTATTTCAT  500

seq1  TGTTAGTGCGTGTCTGTGTGTACATATATTTGTATAGGTTTGTGTAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGCGTGTCTGTGTGTACATATATTTGTATAGGTTTGTGTAGTCA  550

seq1  CAAGATCACTTCAATAGGAGTTCAGATGAGGATGTCAAGTGCTCTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCACTTCAATAGGAGTTCAGATGAGGATGTCAAGTGCTCTGAAAA  600

seq1  TTGAGATGATGGTAGTTGAAAGGTACCAACATATCCGGATGCTGAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGATGGTAGTTGAAAGGTACCAACATATCCGGATGCTGAAACCA  650

seq1  AGCTCTTGTCCACTTTAGGGCCAGTACCTACTCTTAACCACTTAGCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTCCACTTTAGGGCCAGTACCTACTCTTAACCACTTAGCCATC  700

seq1  TTTTTGATGCTGGTATTTTAGATTATTATTGAAATAATTTAATTTTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATGCTGGTATTTTAGATTATTATTGAAATAATTTAATTTTACCT  750

seq1  CTGTTTTTCAAGAACTCTATCATTCAGTAATTGTTTTTAAAGAGACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTCAAGAACTCTATCATTCAGTAATTGTTTTTAAAGAGACTTTT  800

seq1  TTTCAAAGAATTTAAACAATCAATGTTTATTTAATTACCCTGGGACACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGAATTTAAACAATCAATGTTTATTTAATTACCCTGGGACACTA  850

seq1  TTGTCCCTTAATCTAATGTTACATAATTTAGAACAGATCCAATTAGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTTAATCTAATGTTACATAATTTAGAACAGATCCAATTAGTGAA  900

seq1  AACTGCCATCATTTGTCCCTCTTAATATTATCTGAGCACAAAAAAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACTGCCATCATTTGTCCCTCTTAATATTATCTGAGCAC-AAAAAAAAAA  949

seq1  AGACTTACAAATATGGCTCCTAGGGATTATTCTGTCCTTTCATTTGGCAC  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAC-AATATGGCTCCTAGGGATTATTCTGTCCTTTCATTTGGCAC  998

seq1  GTATGGGTAGCACAAAACATGGT-GGTGAGAAGTTATAATAAGAAACTAA  1049
      ||||||||||||||||||||||| |||||  |||||||||||||||||||
seq2  GTATGGGTAGCACAAAACATGGTGGGTGAAGAGTTATAATAAGAAACTAA  1048

seq1  CTTTAAAATGAAATTTAACTTGGAAATGAGTTACT-ATTATAA-TAATAT  1097
      | |||||||||||||| ||| |||||||   |||| ||||||| ||||||
seq2  C-TTAAAATGAAATTT-ACTGGGAAATGGAGTACTAATTATAATTAATAT  1096

seq1  TTAACAGTTGTGAATATTTCCAAAATTAAAATAAATACTTCTATATACTT  1147
      |||||||| ||||||||| ||||||||||||||||||||||||||||  |
seq2  TTAACAGTGGTGAATATTCCCAAAATTAAAATAAATACTTCTATATATCT  1146

seq1  CTTTATACCAATAAAT-GAATGATTCTCTCAGTCTTAGTCAGAGAAATTT  1196
      |||| |||||||||||  ||||||| ||||||||||||||  ||||| ||
seq2  CTTT-TACCAATAAATATAATGATT-TCTCAGTCTTAGTC-CAGAAA-TT  1192

seq1  CTCTTTACCATGAAGAAA  1214
      ||| ||||| ||||||||
seq2  CTC-TTACCTTGAAGAAA  1209

seq1: chr8_65750531_65751660
seq2: B6Ng01-116M04.g_67_1197 (reverse)

seq1  TATTATACTCCCTTTAATTCATTTAG-ATATTCGATGAACAGTTATA-GA  48
      |||| ||||||  || |||||||||| || |  | |||||||||||| ||
seq2  TATT-TACTCC--TTTATTCATTTAGTATTTCGGGTGAACAGTTATAGGA  47

seq1  AACTGCCAGTCTTTCAACAATTGCCTTATATGGGTC-ATATTCCCAGGTA  97
      | |||| |||  |||||||||||| | ||| ||||| |||||||||||||
seq2  ACCTGCAAGTTCTTCAACAATTGCTTAATA-GGGTCAATATTCCCAGGTA  96

seq1  TT-ATGCCAAAATTTCTCTTGCATAAACACAAGTATCTTAATTACC-TCT  145
      || |||||||||||  |||||||||||||||||||||||||||||| |||
seq2  TTAATGCCAAAATTCTTCTTGCATAAACACAAGTATCTTAATTACCTTCT  146

seq1  CATTATATCCCTTTCAAATCAGAAAGTGGCCTCAGGAAGCCATTGTATAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATCCCTTTCAAATCAGAAAGTGGCCTCAGGAAGCCATTGTATAG  196

seq1  TAATTTAATTATTTGTCAAACACTGACTTTTTAGGGAAAGATTTCAAATT  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATTTAATTATTTGTCAAACACTGAC-TTTTAGGGAAAGATTTCAAATT  245

seq1  TCTTAACTTCTGCATGGTATTTGACATTCCACGTTCCTTATCAAAAGACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTTCTGCATGGTATTTGACATTCCACGTTCCTTATCAAAAGACA  295

seq1  AGTTCATTTTAATTTTCA-GGCTATCTGCTTCAGAAAATTGCTCATATGA  344
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTTCATTTTAATTTTCAGGGCTATCTGCTTCAGAAAATTGCTCATATGA  345

seq1  ATACTATAAAATTCACATTAAAAAGGGAGAAGATAAAGTTTAATTAAATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATAAAATTCACATTAAAAAGGGAGAAGATAAAGTTTAATTAAATA  395

seq1  TAGAGGTCACAAAACAGCTGTAAGTTTTTATTTTCTTGTGTTTCACAATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTCACAAAACAGCTGTAAGTTTTTATTTTCTTGTGTTTCACAATT  445

seq1  AAATGAAGTTCTAAATAAATTAAAAGGCAAAAACATGTTGTCCTTCATTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGTTCTAAATAAATTAAAAGGCAAAAACATGTTGTCCTTCATTA  495

seq1  TCTCCAAGAGTAGCTGCTTCAACTTTGATAATAACCTACTTCCTTTTTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGAGTAGCTGCTTCAACTTTGATAATAACCTACTTCCTTTTTCC  545

seq1  ATTCTTTGGATGAATTAGATTGGTGATCAAGAGTAGACATTTAGTCACCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGGATGAATTAGATTGGTGATCAAGAGTAGACATTTAGTCACCA  595

seq1  CACATAGATTTAGCTGCAATAAGAGTATATTGTTAAGCAATAGGATTATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGATTTAGCTGCAATAAGAGTATATTGTTAAGCAATAGGATTATC  645

seq1  AAAAAGGAGATTTGCTTCAAGCTTTTCTCCATTTAAAATTATGCCAGCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGATTTGCTTCAAGCTTTTCTCCATTTAAAATTATGCCAGCTG  695

seq1  AGGGTATAAAACTCTGTCAACTATCTTTTCCTCTTATTAAAACTACATGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAAAACTCTGTCAACTATCTTTTCCTCTTATTAAAACTACATGA  745

seq1  TTTTCCTGATTGCTGTTTCTCTTCCCTCAACTTCTTCCAATTTGTTCCCG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGATTGCTGTTTCTCTTCCCTCAACTTCTTCCAATTTGTTCCCG  795

seq1  TATTCCATCCATTTTTGGATCTACTCCCTTTCTATCTTTCATTAGGAAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATCCATTTTTGGATCTACTCCCTTTCTATCTTTCATTAGGAAAC  845

seq1  AAACAGGCTTCTAAGGAATAATAATAAAATATAATAAGATAAAGCTAACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTTCTAAGGAATAATAATAAAATATAATAAGATAAAGCTAACA  895

seq1  TATTGGAATTAGACAAAATAAACAAAAGAATGAGCCCAAGAGAAGGCATA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAATTAGACAAAATAAACAAAAGAATGAGCCCAAGAGAAGGCATA  945

seq1  GGAATCAAGGACGCATTCTTTTGCAAGCCCTGGAGTCACGTAAATCACTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAAGGACGCATTCTTTTGCAAGCCCTGGAGTCACGTAAATCACTA  995

seq1  GCCTGGAAGCCATAACTTAAATATAGAAAGCTCTCGATGCCGACCTGTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAGCCATAACTTAAATATAGAAAGCTCTCGATGCCGACCTGTGT  1045

seq1  GGGCCATGTGCGTGCTGTTTCAGTCTCTGTGGTTTTGTATGCACGTGAAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGTGCGTGCTGTTTCAGTCTCTGTGGTTTTGTATGCACGTGAAT  1095

seq1  CATGTTAACTCAGAGGGCCTTGCTTTGATGGAATTC  1130
      ||||||||||||||||||||||||||||||||||||
seq2  CATGTTAACTCAGAGGGCCTTGCTTTGATGGAATTC  1131