BAC Information

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BAC

Clone NameB6Ng01-116M09
Chromosome8 (Build37)
Map Location 40,709,395 - 40,826,045
singlet/doubletdoublet
Overlap geneMsr1, EG621431, LOC100039072
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
Downstream geneLOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M09.bB6Ng01-116M09.g
ACCDH921688DH921689
length1,126127
definitionDH921688|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M09, 5' end.DH921689|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,709,395 - 40,710,529)(40,825,919 - 40,826,045)
sequence
gaattcccatgttcctggactgacgaaatcaaggaatttaactgcagaag
aatatcattaagtctttggtcagttgccatgctgaaattctggaagcgtt
ccgtgtctataaggtcggcttttgagtttgaaatgctttcgattctctcc
tccatgtccttcatgtgttccatgataattgtaaatctcatttccacttt
actggtattttctttttccataggaccttgagatgtgtcacttgtgttaa
gtgaacaaactaagcagttcttcatttcccaattcaaaagctgagctgaa
tatttgaataaaaaataaatcaatttttagcctatatcatttgtgctcat
catccctatgtctttgaatcccacccattgaagggtgtttaatgctagct
taaaacaagcatttagttttcattgattagactcagtatattattataaa
tcacatagtcacctctatgatttttatgttagaaattaatccagtataga
tcagcctttctgatttcttattgttagtcttcttaacaattctttgtcaa
ttagagaaaattctacagactgaagtgttctgcacctgagtcatgggcta
tttactgttgctagaaaagagttcaccttaaacaactcttctgaaattat
cctgttggacatatttatattaaaattacaattacaaaatcaatacacag
aataatcagaagaccaatgtcatctacgggattggtaaactgttggttta
tcactgaagataccagaaaagtagtcactttagttaaacaggttagtttt
cctaagataaaattgggaagacacatttgttctctttaaaaatgcattgt
tcacgttacactattttctcctgttgtaaaatatttaatcatagcagcaa
atatgaaaaataatttaccatatgtattattagtctaaagtctaatgttt
gattgcagatttatcaaaacatttgtttccatatatatattattattata
tcatattattatatatttatttgggttgggaaacagacttcagcgtgtag
cctcagcttggccttgatgatgttattacaggcccactctactcaactca
tgaatgcttctgcatagctttcccag
tctgtcagtgctagtgtttcagctaaactcaagattacatatatatgcag
gtgtgaggaacaggagacagagagcaagaagtgggtagagaggaaagagg
gaggagagaagaggaggaggaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_40709395_40710529
seq2: B6Ng01-116M09.b_49_1174

seq1  GAATTCCCATGTTCCTGGACTGACGAAATCAAGGAATTTAACTGCAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTTCCTGGACTGACGAAATCAAGGAATTTAACTGCAGAAG  50

seq1  AATATCATTAAGTCTTTGGTCAGTTGCCATGCTGAAATTCTGGAAGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTAAGTCTTTGGTCAGTTGCCATGCTGAAATTCTGGAAGCGTT  100

seq1  CCGTGTCTATAAGGTCGGCTTTTGAGTTTGAAATGCTTTCGATTCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCTATAAGGTCGGCTTTTGAGTTTGAAATGCTTTCGATTCTCTCC  150

seq1  TCCATGTCCTTCATGTGTTCCATGATAATTGTAAATCTCATTTCCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCCTTCATGTGTTCCATGATAATTGTAAATCTCATTTCCACTTT  200

seq1  ACTGGTATTTTCTTTTTCCATAGGACCTTGAGATGTGTCACTTGTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTATTTTCTTTTTCCATAGGACCTTGAGATGTGTCACTTGTGTTAA  250

seq1  GTGAACAAACTAAGCAGTTCTTCATTTCCCAATTCAAAAGCTGAGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAAACTAAGCAGTTCTTCATTTCCCAATTCAAAAGCTGAGCTGAA  300

seq1  TATTTGAATAAAAAATAAATCAATTTTTAGCCTATATCATTTGTGCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATAAAAAATAAATCAATTTTTAGCCTATATCATTTGTGCTCAT  350

seq1  CATCCCTATGTCTTTGAATCCCACCCATTGAAGGGTGTTTAATGCTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTATGTCTTTGAATCCCACCCATTGAAGGGTGTTTAATGCTAGCT  400

seq1  TAAAACAAGCATTTAGTTTTCATTGATTAGACTCAGTATATTATTATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAGCATTTAGTTTTCATTGATTAGACTCAGTATATTATTATAAA  450

seq1  TCACATAGTCACCTCTATGATTTTTATGTTAGAAATTAATCCAGTATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGTCACCTCTATGATTTTTATGTTAGAAATTAATCCAGTATAGA  500

seq1  TCAGCCTTTCTGATTTCTTATTGTTAGTCTTCTTAACAATTCTTTGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTTCTGATTTCTTATTGTTAGTCTTCTTAACAATTCTTTGTCAA  550

seq1  TTAGAGAAAATTCTACAGACTGAAGTGTTCTGCACCTGAGTCATGGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAATTCTACAGACTGAAGTGTTCTGCACCTGAGTCATGGGCTA  600

seq1  TTTACTGTTGCTAGAAAAGAGTTCACCTTAAACAACTCTTCTGAAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTGCTAGAAAAGAGTTCACCTTAAACAACTCTTCTGAAATTAT  650

seq1  CCTGTTGGACATATTTATATTAAAATTACAATTACAAAATCAATACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGGACATATTTATATTAAAATTACAATTACAAAATCAATACACAG  700

seq1  AATAATCAGAAGACCAATGTCATCTACGGGATTGGTAAACTGTTGGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAGAAGACCAATGTCATCTACGGGATTGGTAAACTGTTGGTTTA  750

seq1  TCACTGAAGATACCAGAAAAGTAGTCACTTTAGTTAAACAGGTTAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGATACCAGAAAAGTAGTCACTTTAGTTAAACAGGTTAGTTTT  800

seq1  CCTAAGATAAAATTGGGAAGACACATTTGTTCTCTTTAAAAATGCATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATAAAATTGGGAAGACACATTTGTTCTCTTTAAAAATGCATTGT  850

seq1  TCACGTTACACTATTTTCTCCTGTTGTAAAATATTTAATCATAGCAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTACACTATTTTCTCCTGTTGTAAAATATTTAATCATAGCAGCAA  900

seq1  ATATGAAAAATAATTTACCATATGTATTATTAGTCTAAAGTCTAATGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAATAATTTACCATATGTATTATTAGTCTAAAGTCTAATGTTT  950

seq1  GATTGCAGATTTATCAAAACATTTGTTTCCATTATTATTATTATTATTAT  1000
      |||||||||||||||||||||||||||||||    |||   |||||||||
seq2  GATTGCAGATTTATCAAAACATTTGTTTCCA----TATATATATTATTAT  996

seq1  TATTATCATTATTATTATTATTATTTTATTTGGTTTGTGATACAGAACTT  1050
      || |||||    |||||||||   ||||||||| ||| || |||| ||||
seq2  TA-TATCA----TATTATTATATATTTATTTGGGTTGGGAAACAG-ACTT  1040

seq1  CAGCGTGTAG-CTCAGCTTGGCCTTGATGATGTTA-TACA-GCCCACTCT  1097
      |||||||||| |||||||||||||||||||||||| |||| |||||||||
seq2  CAGCGTGTAGCCTCAGCTTGGCCTTGATGATGTTATTACAGGCCCACTCT  1090

seq1  AACCTCAGACTCATG-ATGCTTCTGCATAGCTTTCCCAG  1135
      |  |||| ||||||| |||||||||||||||||||||||
seq2  A--CTCA-ACTCATGAATGCTTCTGCATAGCTTTCCCAG  1126

seq1: chr8_40825919_40826045
seq2: B6Ng01-116M09.g_74_200 (reverse)

seq1  TCTTCCTCCTCCTCCTCTTCTCTCCTCCCTCTTTCCTCTCTACCCACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCTCCTCCTCTTCTCTCCTCCCTCTTTCCTCTCTACCCACTTC  50

seq1  TTGCTCTCTGTCTCCTGTTCCTCACACCTGCATATATATGTAATCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCTGTCTCCTGTTCCTCACACCTGCATATATATGTAATCTTGAG  100

seq1  TTTAGCTGAAACACTAGCACTGACAGA  127
      |||||||||||||||||||||||||||
seq2  TTTAGCTGAAACACTAGCACTGACAGA  127