BAC Information

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BAC

Clone NameB6Ng01-116M24
Chromosome8 (Build37)
Map Location 45,134,525 - 45,235,873
singlet/doubletdoublet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M24.bB6Ng01-116M24.g
ACCDH921718DH921719
length1,120811
definitionDH921718|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M24, 5' end.DH921719|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,134,525 - 45,135,649)(45,235,039 - 45,235,873)
sequence
gaattccattcaacagaataaaaaataatacaaataatgtgaaaaaattc
cagggatttagaaagaccatgttttgagtattgtcaatgtttggtttgtg
ttctacttttgggtctgtgttatatgtgcccgaggcaagaacttggagag
aaaaaaacctaagcagtaataaaaggaaaaaataactttaaagaaactgt
actccttacccaaaataagataagctgattttcctatttctttcaggtag
acccgtttccctgagtgaccctggacactaaaccttcccctttctgaaag
ggttcacagaagtggcaggaaactcaggacaatcttcaccatctgctgcc
aaatcaaaccctctactagtatgtatttgactactggcctgctcaggacc
ctttcttcttttattttaaatttattgcagctaaaaatatctccttttct
atgaagcaagtctacattgtagaagctgacaactgccttcccttaccacc
aaggggacacaattttgactaatgcaaattgatattcgcttttaggaaag
gcgttgagttagttttccaagaatactactagaagatacaataaaccaaa
caagcaagctttccttctacttggtataactatataactgtttctttacg
ctacatattgccttccatcttactaccttcaaaaacatgttctatgaaag
ctaaggcttgctttggactgaagaaatactgtagatgatagaagagatgg
gggaaaaatctgtctccagtaatattgactatctctgcttggtcatgtct
ccgctaaagttctgagacagcaatttttcatcattgtttaagacaattga
gtttaatttatcatgacatgtagaagattcatgatacctccaattcattt
ctaactgaaaacaactcttgacaaagaatcattatttccattttatcatt
taaatgaaaaaagcataatttcgaatcactcctctttgtctatcaagttc
aagaaagaacattgctcagtaagccttatactttcaggagaacatgccac
actaaaggtttactgttctcttgttgtgaaaatttctttcatgattctgg
gcatgtcttattaacactgg
gaattcatcaggtttgtgaagcaaaataaccctgctaatgcctttggcat
agtcactatttctgacagtttttgctatagccatttctgacttccctaag
tcagggcaaggaattttctaccaggtacaactactagattgtgtaaaaca
cacacacacacacacacacacacacacacacacacaatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
attgtgtttctgagatacacatcactggggcgcgtgtgcgtgtctataaa
attttaatttaagcatccacaataatgttttggtttatgtgaattacatt
tattaatattaaaaacacaaggctttcctaggccataactcattttaagg
gcaaatgatgcaatatttattaatttacatgaaataagcaataaatataa
ataaaatcctaaactataaaaatgatataatcattttacatggcactatg
tttcacagggacatttcatctgagtgtataagatacatctctctagcctc
taacctctcattagattttttttccatttctctagacagttctctcctgc
tccaccaatatgtctgttgtgagagaataagccatctttatatcaccaag
ggagaacagaaataccaaaagtatctgtatactctctggtgctatgataa
caccatgactagacacttatagagaagagactatacttcgctatagctcc
agaagactaaattcatcatgcagaagcagtatgcagatgctcgagtagca
gccagaggtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_45134525_45135649
seq2: B6Ng01-116M24.b_47_1166

seq1  GAATTCCATTCAACAGAATAAAAAATAATACAAATAATGTGAAAAAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCAACAGAATAAAAAATAATACAAATAATGTGAAAAAATTC  50

seq1  CAGGGATTTAGAAAGACCATGTTTTGAGTATTGTCAATGTTTGGTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTTAGAAAGACCATGTTTTGAGTATTGTCAATGTTTGGTTTGTG  100

seq1  TTCTACTTTTGGGTCTGTGTTATATGTGCCCGAGGCAAGAACTTGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTTGGGTCTGTGTTATATGTGCCCGAGGCAAGAACTTGGAGAG  150

seq1  AAAAAAACCTAAGCAGTAATAAAAGGAAAAAATAACTTTAAAGAAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCTAAGCAGTAATAAAAGGAAAAAATAACTTTAAAGAAACTGT  200

seq1  ACTCCTTACCCAAAATAAGATAAGCTGATTTTCCTATTTCTTTCAGGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTACCCAAAATAAGATAAGCTGATTTTCCTATTTCTTTCAGGTAG  250

seq1  ACCCGTTTCCCTGAGTGACCCTGGACACTAAACCTTCCCCTTTCTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTTTCCCTGAGTGACCCTGGACACTAAACCTTCCCCTTTCTGAAAG  300

seq1  GGTTCACAGAAGTGGCAGGAAACTCAGGACAATCTTCACCATCTGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACAGAAGTGGCAGGAAACTCAGGACAATCTTCACCATCTGCTGCC  350

seq1  AAATCAAACCCTCTACTAGTATGTATTTGACTACTGGCCTGCTCAGGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAACCCTCTACTAGTATGTATTTGACTACTGGCCTGCTCAGGACC  400

seq1  CTTTCTTCTTTTATTTTAAATTTATTGCAGCTAAAAATATCTCCTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTTATTTTAAATTTATTGCAGCTAAAAATATCTCCTTTTCT  450

seq1  ATGAAGCAAGTCTACATTGTAGAAGCTGACAACTGCCTTCCCTTACCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAAGTCTACATTGTAGAAGCTGACAACTGCCTTCCCTTACCACC  500

seq1  AAGGGGACACAATTTTGACTAATGCAAATTGATATTCGCTTTTAGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACACAATTTTGACTAATGCAAATTGATATTCGCTTTTAGGAAAG  550

seq1  GCGTTGAGTTAGTTTTCCAAGAATACTACTAGAAGATACAATAAACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGAGTTAGTTTTCCAAGAATACTACTAGAAGATACAATAAACCAAA  600

seq1  CAAGCAAGCTTTCCTTCTACTTGGTATAACTATATAACTGTTTCTTTACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCTTTCCTTCTACTTGGTATAACTATATAACTGTTTCTTTACG  650

seq1  CTACATATTGCCTTCCATCTTACTACCTTCAAAAACATGTTCTATGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTGCCTTCCATCTTACTACCTTCAAAAACATGTTCTATGAAAG  700

seq1  CTAAGGCTTGCTTTGGACTGAAGAAATACTGTAGATGATAGAAGAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCTTGCTTTGGACTGAAGAAATACTGTAGATGATAGAAGAGATGG  750

seq1  GGGAAAAATCTGTCTCCAGTAATATTGACTATCTCTGCTTGGTCATGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAATCTGTCTCCAGTAATATTGACTATCTCTGCTTGGTCATGTCT  800

seq1  CCGCTAAAGTTCTGAGACAGCAATTTTTCATCATTGTTTAAGACAATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAAAGTTCTGAGACAGCAATTTTTCATCATTGTTTAAGACAATTGA  850

seq1  GTTTAATTTATCATGACATGTAGAAGATTCATGATACCTCCAATTCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTTAATTTATCATGACATGTAGAAGATTCATGATACCTCCAATTCA-TT  899

seq1  TCTAACTGAAAACAACTCTTGACAAAGAATCATTATTTCCATTTTATCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTAACTGAAAACAACTCTTGACAAAGAATCATTATTTCCATTTTATCA-  948

seq1  TTTAAATGAAAAAAGCATAATTTCGAATCACTCCTCTTTGTCTATTCAAG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTAAATGAAAAAAGCATAATTTCGAATCACTCCTCTTTGTCTA-TCAAG  997

seq1  TTCAAGACAGACATTTGCTCAGTAAGCCTTATACTTTCAGGAGAACATGC  1050
      ||||||| |||   ||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAGAACATTGCTCAGTAAGCCTTATACTTTCAGGAGAACATGC  1047

seq1  CACACTAAAGTTTTACTTGTTCCTCTTGTTTGTG-ATATTTCTTTCATGT  1099
      |||||||||| ||||| |||| |||||| ||||| | |||||||||||| 
seq2  CACACTAAAGGTTTAC-TGTT-CTCTTG-TTGTGAAAATTTCTTTCATGA  1094

seq1  ATCTGGGCATGTCTTATTAACACTGG  1125
       |||||||||||||||||||||||||
seq2  TTCTGGGCATGTCTTATTAACACTGG  1120

seq1: chr8_45235039_45235873
seq2: B6Ng01-116M24.g_68_878 (reverse)

seq1  GCACCTCTTGGCTTGCTACTCCAGCATCTGCCTACTGCTTTCTTGCCATG  50
      ||||||| |||| |||||||| ||||||||| |||||| ||||   ||||
seq2  GCACCTC-TGGC-TGCTACTCGAGCATCTGCATACTGC-TTCT--GCATG  45

seq1  ATGAAATTTTAGTCTTCTGGAGCTATAAGCG-AGTATAGTCTCTTCCTTC  99
      |||||  ||||||||||||||||||| |||| ||||||||||||||  ||
seq2  ATGAA--TTTAGTCTTCTGGAGCTAT-AGCGAAGTATAGTCTCTTC--TC  90

seq1  TATAAAGTGTCTTGGTCATGGTGTTTATCATAGCACCAGAAAAGTAATAC  149
      ||| ||||||| | ||||||||| ||||||||||||||| | ||| ||||
seq2  TAT-AAGTGTC-TAGTCATGGTG-TTATCATAGCACCAG-AGAGT-ATAC  135

seq1  AGATACTTTTGGTAATTCTGTTCTCCCCTTGGTGATATTAAAGATGGCTT  199
      |||||||||||||| ||||||||| |||||||||||| ||||||||||||
seq2  AGATACTTTTGGTATTTCTGTTCT-CCCTTGGTGATA-TAAAGATGGCTT  183

seq1  ATTCTCTCACAACAGACATATTGGTGGAGGCAGGAGAGAAACTGTCTAGA  249
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  ATTCTCTCACAACAGACATATTGGTGGA-GCAGGAGAG-AACTGTCTAGA  231

seq1  GAAATGGAAAAAAAAATCTAATGAGAGGTTAGAGGCTAGAGAGATGTATC  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGG-AAAAAAAATCTAATGAGAGGTTAGAGGCTAGAGAGATGTATC  280

seq1  TTATACACTCAGATGAAAATGTCCCTGTGAAACATAGTGCCATGTAAAAT  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTATACACTCAGATG-AAATGTCCCTGTGAAACATAGTGCCATGTAAAAT  329

seq1  GATTATATCATTTTTATAGTTTAGGATTTTATTTATATTTATTGCTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATCATTTTTATAGTTTAGGATTTTATTTATATTTATTGCTTATT  379

seq1  TCATGTAAATTAATAAATATTGCATCATTTGCCCTTAAAATGAGTTATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAATTAATAAATATTGCATCATTTGCCCTTAAAATGAGTTATGG  429

seq1  CCTAGGAAAGCCTTGTGTTTTTAATATTAATAAATGTAATTCACATAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAAAGCCTTGTGTTTTTAATATTAATAAATGTAATTCACATAAAC  479

seq1  CAAAACATTATTGTGGATGCTTAAATTAAAATTTTATAGAAAAGAATGAG  549
      |||||||||||||||||||||||||||||||||||||||| | | |   |
seq2  CAAAACATTATTGTGGATGCTTAAATTAAAATTTTATAGACACGCACACG  529

seq1  TGCCCCAGTGATGTGTATTTCAGAAATACATGCTAAATTGATATATATAT  599
       ||||||||||||||||| ||||||| |||    | ||  ||||||||||
seq2  CGCCCCAGTGATGTGTATCTCAGAAACACA----ATATATATATATATAT  575

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATAT  625

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTACACAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTACACAATC  675

seq1  TAGTAGTTGTACCTGGTAGAAAATTCCTTGCCCTGACTTAGGGAAGTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTGTACCTGGTAGAAAATTCCTTGCCCTGACTTAGGGAAGTCAG  725

seq1  AAATGGCTATAGCAAAAACTGTCAGAAATAGTGACTATGCCAAAGGCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTATAGCAAAAACTGTCAGAAATAGTGACTATGCCAAAGGCATT  775

seq1  AGCAGGGTTATTTTGCTTCACAAACCTGATGAATTC  835
      ||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTTATTTTGCTTCACAAACCTGATGAATTC  811