BAC Information

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BAC

Clone NameB6Ng01-116P18
Chromosome8 (Build37)
Map Location 78,144,411 - 78,236,648
singlet/doubletdoublet
Overlap gene1700007B14Rik, LOC666036
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116P18.bB6Ng01-116P18.g
ACCDH921841DH921842
length1,1751,118
definitionDH921841|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P18, 5' end.DH921842|Mus musculus domesticus DNA, BAC clone: B6Ng01-116P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,235,452 - 78,236,648)(78,144,411 - 78,145,535)
sequence
gaattcttggcctcggcagaatcggaagagaggtggccacccgaatgcag
tcctttggaatgaagactgtaggctatgaccccatcatctctcctgaagt
cgccgcctcctttggtgttcagcagctgccgctggaggagatctggcctc
tctgtgactttataactgtccataccccactcctgccctctaccacaggc
ttgctgaatgacagcacctttgctcagtgcaagaaaggcgtgcgagtggt
gaactgtgctcgaggaggcatcgtggatgaaggtgccctgctgcgtgccc
tgcagtctggtcagtgtgctggggctgcactggatgtgtttacagaagag
ccaccacgggaccgggccttagtggaccacgagaatgtcatcagctgtcc
ccacctgggtgccagcaccaaggaagcccagagccgctgtggggaggaaa
tcgcagtccagtttgtggacatggtgaaggggaaatctctaacaggcgtc
gtgaacgcccaggccctcaccagtgccttctttccacacaccaagccttg
gattggtctggcagaagcaatgggcacgctgatgcacgcctgggctggct
cccctaaagggaccatccaggtggttacacaaggaacatctctgaagaat
gctgggacctgcctgagccctgcagtcattgtcggccttctgagagaagc
atctaagcaggcagacgtgaacttggtgaacgctaagctactggtgaaag
aggctggcctcaatgtcaccacctcccacaaccctggggttccaggggag
cagggtagcggggaatgcctcctgactgtggccctggcaggtgcccccta
ccaagctgtgggcttggtccagggcaccacaccaatgctgcagatgctca
acggagctgtcatcagaccagaggtgccactacgcagaggccaacccctg
ctcatattccgggctcagccctccaaccctgtgatgctgcccactatgat
cggcttctggcagaggcggtgtacagctgctgtctacaaactccatgtgt
ctgacggagagcctgcatgtcatggcctgttcctccctgctgccagctga
aacgtgagcaccatgtaattggaggcttcagttctgccttctgacctggg
gttcaccctcagcccaggcttctga
gaattcataaccaccccaggattgaatgagaattcatattatcagtattt
taaaaatctataatgtgagaaattaaagttatagttgaaaatgccatcaa
ctgcctgcaagaagcaaacacggatacatttacagggctatatcttgatt
acatcttatatccagcacatgtatttaaatttctatgaaatatgtataaa
taattttcattcttaagaaatattagttgtgaataatcattatttgtata
gaatacgagtttgtgatgtaagaaattaaatctcataaggacgtaagtca
ccaggggagagattgagttatcttctcctcacaaagaccataaatacata
aatgatcaggtaaaagataaaaacaactgaggtcaatatatatgcataca
cacacacacacacacacacacacacacacacacacacacacacacagatg
aatgagcaacagactatagatctagctgagaaggtgtgatgaggaactga
agaaacctgtagaagtttaagtatgatactgaaagaaagtagaattagta
aactagaaagcacagtgcaggaaaaagcacagaggtaaagaagaaagatg
aaaggtggaaccctggagaatgtgttgagtttaagtggaaataaacttct
gacttttctagccaagaaactaagtagagtgggggaaagtgtatttatta
gaagaggtgctgagcactgcttcatgcagccctgattccgtgtcggatgt
ggggaagagaaaggaacagtgtgcaagaaagagtgagcgaccacggtgat
ggacagcatggtatgggggctgccttggctctgcttggcctgatctgcaa
gttttggcattgtgaacatagaaaagaatcgtgatacaaatacaaaaata
aattatatgtccatagtaatattctaaatgagagcaaatgatgacatttt
ttcttacagaggaagccagcttaaaaacgattatataatagatacagcac
aattctattagtgagtgtttgggcacaggtatagtggatacttaatttgt
cttcaaagacttttggattattctattttatattgttagagtattagcaa
gaatggatagcaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78235452_78236648
seq2: B6Ng01-116P18.b_50_1224 (reverse)

seq1  TCAGAAGAGCCTGTGGGGCTGAGAGTGCTGAACCCCAGGGTCAGAA-GCA  49
      |||||  |||||   ||||||||   | ||||||||| |||||||| |||
seq2  TCAGA--AGCCT---GGGCTGAG---GGTGAACCCCA-GGTCAGAAGGCA  41

seq1  GAACTGGAAAGCCTCCAA-TACATGCTGCTTCCACGTTTCCAGGCTGGGC  98
      ||||||  |||||||||| |||||| ||||  ||||||||   ||| |||
seq2  GAACTG--AAGCCTCCAATTACATGGTGCT--CACGTTTC--AGCT-GGC  84

seq1  AGCAGGGAGG-ACAGGCCCATGACATGCCAGGGCTCTCCGTCAGACACCA  147
      |||||||||| ||||| |||||||||||   |||||||||||||||| ||
seq2  AGCAGGGAGGAACAGG-CCATGACATGC--AGGCTCTCCGTCAGACA-CA  130

seq1  TGGAGGTTTGGTAGGACAGCAGCTGTACACCCGCCTCTGCCAGGAGGCCG  197
      |||||  || ||| ||||||||||||||| |||||||||||| || ||||
seq2  TGGAG--TTTGTA-GACAGCAGCTGTACA-CCGCCTCTGCCA-GAAGCCG  175

seq1  ATCATAGTGGGCAGCATCACAGGGTTGGAGGGCTGAGCCCGGAATATGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGTGGGCAGCATCACAGGGTTGGAGGGCTGAGCCCGGAATATGAG  225

seq1  CAGGGGTTGGCCTCTGCGTAGTGGCACCTCTGGTCTGATGACAGCTCCGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTTGGCCTCTGCGTAGTGGCACCTCTGGTCTGATGACAGCTCCGT  275

seq1  TGAGCATCTGCAGCATTGGTGTGGTGCCCTGGACCAAGCCCACAGCTTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCTGCAGCATTGGTGTGGTGCCCTGGACCAAGCCCACAGCTTGG  325

seq1  TAGGGGGCACCTGCCAGGGCCACAGTCAGGAGGCATTCCCCGCTACCCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGCACCTGCCAGGGCCACAGTCAGGAGGCATTCCCCGCTACCCTG  375

seq1  CTCCCCTGGAACCCCAGGGTTGTGGGAGGTGGTGACATTGAGGCCAGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTGGAACCCCAGGGTTGTGGGAGGTGGTGACATTGAGGCCAGCCT  425

seq1  CTTTCACCAGTAGCTTAGCGTTCACCAAGTTCACGTCTGCCTGCTTAGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCAGTAGCTTAGCGTTCACCAAGTTCACGTCTGCCTGCTTAGAT  475

seq1  GCTTCTCTCAGAAGGCCGACAATGACTGCAGGGCTCAGGCAGGTCCCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTCAGAAGGCCGACAATGACTGCAGGGCTCAGGCAGGTCCCAGC  525

seq1  ATTCTTCAGAGATGTTCCTTGTGTAACCACCTGGATGGTCCCTTTAGGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAGAGATGTTCCTTGTGTAACCACCTGGATGGTCCCTTTAGGGG  575

seq1  AGCCAGCCCAGGCGTGCATCAGCGTGCCCATTGCTTCTGCCAGACCAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCCCAGGCGTGCATCAGCGTGCCCATTGCTTCTGCCAGACCAATC  625

seq1  CAAGGCTTGGTGTGTGGAAAGAAGGCACTGGTGAGGGCCTGGGCGTTCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTGGTGTGTGGAAAGAAGGCACTGGTGAGGGCCTGGGCGTTCAC  675

seq1  GACGCCTGTTAGAGATTTCCCCTTCACCATGTCCACAAACTGGACTGCGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCTGTTAGAGATTTCCCCTTCACCATGTCCACAAACTGGACTGCGA  725

seq1  TTTCCTCCCCACAGCGGCTCTGGGCTTCCTTGGTGCTGGCACCCAGGTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCCCACAGCGGCTCTGGGCTTCCTTGGTGCTGGCACCCAGGTGG  775

seq1  GGACAGCTGATGACATTCTCGTGGTCCACTAAGGCCCGGTCCCGTGGTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTGATGACATTCTCGTGGTCCACTAAGGCCCGGTCCCGTGGTGG  825

seq1  CTCTTCTGTAAACACATCCAGTGCAGCCCCAGCACACTGACCAGACTGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTAAACACATCCAGTGCAGCCCCAGCACACTGACCAGACTGCA  875

seq1  GGGCACGCAGCAGGGCACCTTCATCCACGATGCCTCCTCGAGCACAGTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGCAGCAGGGCACCTTCATCCACGATGCCTCCTCGAGCACAGTTC  925

seq1  ACCACTCGCACGCCTTTCTTGCACTGAGCAAAGGTGCTGTCATTCAGCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCGCACGCCTTTCTTGCACTGAGCAAAGGTGCTGTCATTCAGCAA  975

seq1  GCCTGTGGTAGAGGGCAGGAGTGGGGTATGGACAGTTATAAAGTCACAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGTAGAGGGCAGGAGTGGGGTATGGACAGTTATAAAGTCACAGA  1025

seq1  GAGGCCAGATCTCCTCCAGCGGCAGCTGCTGAACACCAAAGGAGGCGGCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGATCTCCTCCAGCGGCAGCTGCTGAACACCAAAGGAGGCGGCG  1075

seq1  ACTTCAGGAGAGATGATGGGGTCATAGCCTACAGTCTTCATTCCAAAGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGAGAGATGATGGGGTCATAGCCTACAGTCTTCATTCCAAAGGA  1125

seq1  CTGCATTCGGGTGGCCACCTCTCTTCCGATTCTGCCGAGGCCAAGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCGGGTGGCCACCTCTCTTCCGATTCTGCCGAGGCCAAGAATTC  1175

seq1: chr8_78144411_78145535
seq2: B6Ng01-116P18.g_68_1185

seq1  GAATTCATAACCACCCCAGGATTGAATGAGAATTCATATTATCAGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACCACCCCAGGATTGAATGAGAATTCATATTATCAGTATTT  50

seq1  TAAAAATCTATAATGTGAGAAATTAAAGTTATAGTTGAAAATGCCATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTATAATGTGAGAAATTAAAGTTATAGTTGAAAATGCCATCAA  100

seq1  CTGCCTGCAAGAAGCAAACACGGATACATTTACAGGGCTATATCTTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCAAGAAGCAAACACGGATACATTTACAGGGCTATATCTTGATT  150

seq1  ACATCTTATATCCAGCACATGTATTTAAATTTCTATGAAATATGTATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATATCCAGCACATGTATTTAAATTTCTATGAAATATGTATAAA  200

seq1  TAATTTTCATTCTTAAGAAATATTAGTTGTGAATAATCATTATTTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCATTCTTAAGAAATATTAGTTGTGAATAATCATTATTTGTATA  250

seq1  GAATACGAGTTTGTGATGTAAGAAATTAAATCTCATAAGGACGTAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACGAGTTTGTGATGTAAGAAATTAAATCTCATAAGGACGTAAGTCA  300

seq1  CCAGGGGAGAGATTGAGTTATCTTCTCCTCACAAAGACCATAAATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGAGATTGAGTTATCTTCTCCTCACAAAGACCATAAATACATA  350

seq1  AATGATCAGGTAAAAGATAAAAACAACTGAGGTCAATATATATGCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCAGGTAAAAGATAAAAACAACTGAGGTCAATATATATGCATACA  400

seq1  CACACACACACACACACACACACACACACACACACACACACACACAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACAGATG  450

seq1  AATGAGCAACAGACTATAGATCTAGCTGAGAAGGTGTGATGAGGAACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAACAGACTATAGATCTAGCTGAGAAGGTGTGATGAGGAACTGA  500

seq1  AGAAACCTGTAGAAGTTTAAGTATGATACTGAAAGAAAGTAGAATTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGTAGAAGTTTAAGTATGATACTGAAAGAAAGTAGAATTAGTA  550

seq1  AACTAGAAAGCACAGTGCAGGAAAAAGCACAGAGGTAAAGAAGAAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAAGCACAGTGCAGGAAAAAGCACAGAGGTAAAGAAGAAAGATG  600

seq1  AAAGGTGGAACCCTGGAGAATGTGTTGAGTTTAAGTGGAAATAAACTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGAACCCTGGAGAATGTGTTGAGTTTAAGTGGAAATAAACTTCT  650

seq1  GACTTTTCTAGCCAAGAAACTAAGTAGAGTGGGGGAAAGTGTATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTCTAGCCAAGAAACTAAGTAGAGTGGGGGAAAGTGTATTTATTA  700

seq1  GAAGAGGTGCTGAGCACTGCTTCATGCAGCCCTGATTCCGTGTCGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGCTGAGCACTGCTTCATGCAGCCCTGATTCCGTGTCGGATGT  750

seq1  GGGGAAGAGAAAGGAACAGTGTGCAAGAAAGAGTGAGCGACCACGGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGAAAGGAACAGTGTGCAAGAAAGAGTGAGCGACCACGGTGAT  800

seq1  GGACAGCATGGTATGGGGGCTGCCTTGGCTCTGCTTGGCCTGATCTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATGGTATGGGGGCTGCCTTGGCTCTGCTTGGCCTGATCTGCAA  850

seq1  GTTTTGGCATTGTGAACATAGAAAAGAATCGTGATACAAATACAAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGCATTGTGAACATAGAAAAGAATCGTGATACAAATACAAAAATA  900

seq1  AATTAATATGTCCATAGTAATATTCAAAATGAGAGCAAATGATGACA-TT  949
      |||| |||||||||||||||||||| ||||||||||||||||||||| ||
seq2  AATT-ATATGTCCATAGTAATATTCTAAATGAGAGCAAATGATGACATTT  949

seq1  TTTCTTACAGAGGAAGCCAGCTTATAAACGATTATATAATAGAATTACAG  999
      |||||||||||||||||||||||| ||||||||||||||||||  |||||
seq2  TTTCTTACAGAGGAAGCCAGCTTAAAAACGATTATATAATAGA--TACAG  997

seq1  CACAATTCTATTAGTGAGTGTTTTGGCACAAGTTATTAGTGGATACTTAA  1049
      ||||||||||||||||||||||| |||||| ||   ||||||||||||||
seq2  CACAATTCTATTAGTGAGTGTTTGGGCACAGGT--ATAGTGGATACTTAA  1045

seq1  -TTGTCTTTCAAAAAGACATTTTGGATTAAT-TCATTTATA-TGTTAGAG  1096
       |||||||    |||||| |||||||||| | |  |||||| ||||||||
seq2  TTTGTCTT---CAAAGAC-TTTTGGATTATTCTATTTTATATTGTTAGAG  1091

seq1  TATCAGCCAAAGATTGATAGCAAACAAAA  1125
      ||| || |||  || |||||| |||||||
seq2  TATTAG-CAAGAATGGATAGC-AACAAAA  1118