BAC Information

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BAC

Clone NameB6Ng01-117K06
Chromosome8 (Build37)
Map Location 112,158,961 - 112,293,526
singlet/doubletdoublet
Overlap genePkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh
Downstream geneLOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K06.bB6Ng01-117K06.g
ACCDH922329DH922330
length1,0901,083
definitionDH922329|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K06, 5' end.DH922330|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,292,435 - 112,293,526)(112,158,961 - 112,160,043)
sequence
gaattccttaagagctgatcaaagcaacggacatcacccttatatgttca
gaaacttgtccaccatgtagaagataggcgctaagaaaccctcccagaat
gcaagcagggttatttatctaagaagcctcacacaggaactctgtctatt
tgcattacccaggtttccagcaacaaggcactggtgaaaagaccttcatt
ttcctaccagtttttaaaatgtgttcaatactggaaggaccatacctcta
gaaccgtatcatgaatttcaaaacatgacctatacccttatcataaatgg
ttagctgctacaaaggactctgtatccccgggaaatcactagcatactct
ctcagccagggatggaatattcttataatatataaaaaaaggccagggct
ggagagatggctcaatggttaagagcactgactgatcttctgaaggtcct
gagttcaaatcctagcaaccacatggtggctcacaaccacccatagtgag
atctgatgccctcttctggggtgtctgaagacagctacagtgtactcata
cacattacatacatacatacataaatacataaataaataaatttttaaaa
taaaaataaaaggcctccagctccttccagcatcctccaaacttgataaa
cagtaaagaaagcaggacatagccgagcagtggtggcgcacgcctttaat
ctcagcacttgggaggcagaagcaggcaaatttctgagttcgaggccagc
ctggtctacagagtaagttccaggacagccagggctacacagagaaaccc
tgcctcgaaaaaaacaaaaaacaaaaaaaaagaaggaaagaaagaaagaa
agaaagaaagagagagagagagagagagagagagagagagagagagaaag
aagaaaggaaggaagaaagaaagccattcgtgtcacagccatcattttga
aaggaagaaagatcattaaggaaggactggttgaagttcccaatgcaatt
tgcaaacagcaaaatatttttaatacatttatttacttattaatgtgttg
ggtggtgtgtatgttgtggctgtgtgtgtgggagtgtgtg
gaattcaggacatgccgctggtctcttctgcacgtctctggtgctagact
cataaccttgtttgtaagataataataatgaataatagtggttgtggatc
tgagggggtcttagcccactgcgactataacgcagcatccttctctgtcc
taagatgaggagtacacgtgggtgctgacaccagagaacctgtggtacgg
gactggcacctactacataatggctgtggagaataaaagtacagaggcgg
cacagcacacacccgtcctggtctcagtggtcacagctgtcacccagtgc
tatttctgggaccgatacaataggacatggaagagcgatggatgccaagt
aagggatgggaggggctctctgaaaccttcactgcacccctcccccttcc
atttttgggaatgggccagaaacaattccagtctgaagggaagcaaatca
gcctgggaccaaataagaaggtggcccatggtagccccttcttcagggtt
ttaaaaataataaaggactcaggaataatagaagccacccgtggacccct
tgccatcctcaccccctctcctctgttgtgggaagccacagtcttggatc
tttcaagacatacttcataaataccttacacgtgaggtgcccatgttaga
aactagagatggaggaatacatcagtgacatcagtgaagaaggcgccata
taccagggctgccaagcatgggagcctgagttcaatcccgagaacccgta
tggggcgaaagggagaactcactcctgcaagttgttctttggcctccaca
taggtcctgtggcccatgctcacacgataaatgttagtatatctatatta
taaatggatatcatatataaatatagaatatgttatattatatattacat
taatataaatggatttataacctgtaatatataatattaatataatatat
aatatgtagtttatacatacatatatatgtagaaatatatattatataca
taatatagatatatacgattgtaatccttcaggtctatcctgtttttctg
gctcaaagctgcctatgtgccccattcctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112292435_112293526
seq2: B6Ng01-117K06.b_47_1136 (reverse)

seq1  CACACACTCACACACACACACAGACACACATACACACACACAAACACATT  50
      ||||||||| ||||||||||   ||| ||||||||||   | ||||||||
seq2  CACACACTCCCACACACACAGCCACA-ACATACACACCACCCAACACATT  49

seq1  AATAAGTAAATAAATGTATTAAAAATATTTTGCTGTTTGCAAATTGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAATAAATGTATTAAAAATATTTTGCTGTTTGCAAATTGCATT  99

seq1  GGGAACTTCAACCAGTCCTTCC-TAATGATCTTTCTTCCTTTCAAAATGA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGAACTTCAACCAGTCCTTCCTTAATGATCTTTCTTCCTTTCAAAATGA  149

seq1  TGGCTGTGACACGAATGGCTTTCTTTCTTCCTTCCTTTCTTTCTTTCTCT  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGCTGTGACACGAATGGCTTTCTTTCTTCCTTCCTTTC-TTCTTTCTCT  198

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCT  248

seq1  TTCTTTCCTTCTTTTTTTTTGTTTTTTGTTTTTTTTCGAGGCAGGGTTTC  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTTTCCTTCTTTTTTTTTGTTTTTTG-TTTTTTTCGAGGCAGGGTTTC  297

seq1  TCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTAGCCCTGGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGCC  347

seq1  TCGAACTCAGAAATTTGCCTGCTTCTGCCTCCCAAGTGCTGAGATTAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATTTGCCTGCTTCTGCCTCCCAAGTGCTGAGATTAAAG  397

seq1  GCGTGCGCCACCACTGCTCGGCTATGTCCTGCTTTCTTTACTGTTTATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGCCACCACTGCTCGGCTATGTCCTGCTTTCTTTACTGTTTATCA  447

seq1  AGTTTGGAGGATGCTGGAAGGAGCTGGAGGCCTTTTATTTTTATTTTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGGATGCTGGAAGGAGCTGGAGGCCTTTTATTTTTATTTTAAA  497

seq1  AATTTATTTATTTATGTATTTATGTATGTATGTATGTAATGTGTATGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTATTTATGTATTTATGTATGTATGTATGTAATGTGTATGAGT  547

seq1  ACACTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCACTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAGCTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCACTA  597

seq1  TGGGTGGTTGTGAGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTTGTGAGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCT  647

seq1  TCAGAAGATCAGTCAGTGCTCTTAACCATTGAGCCATCTCTCCAGCCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGATCAGTCAGTGCTCTTAACCATTGAGCCATCTCTCCAGCCCTG  697

seq1  GCCTTTTTTTATATATTATAAGAATATTCCATCCCTGGCTGAGAGAGTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTTTATATATTATAAGAATATTCCATCCCTGGCTGAGAGAGTAT  747

seq1  GCTAGTGATTTCCCGGGGATACAGAGTCCTTTGTAGCAGCTAACCATTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGATTTCCCGGGGATACAGAGTCCTTTGTAGCAGCTAACCATTTA  797

seq1  TGATAAGGGTATAGGTCATGTTTTGAAATTCATGATACGGTTCTAGAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGGTATAGGTCATGTTTTGAAATTCATGATACGGTTCTAGAGGT  847

seq1  ATGGTCCTTCCAGTATTGAACACATTTTAAAAACTGGTAGGAAAATGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTTCCAGTATTGAACACATTTTAAAAACTGGTAGGAAAATGAAG  897

seq1  GTCTTTTCACCAGTGCCTTGTTGCTGGAAACCTGGGTAATGCAAATAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCACCAGTGCCTTGTTGCTGGAAACCTGGGTAATGCAAATAGAC  947

seq1  AGAGTTCCTGTGTGAGGCTTCTTAGATAAATAACCCTGCTTGCATTCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCTGTGTGAGGCTTCTTAGATAAATAACCCTGCTTGCATTCTGG  997

seq1  GAGGGTTTCTTAGCGCCTATCTTCTACATGGTGGACAAGTTTCTGAACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTCTTAGCGCCTATCTTCTACATGGTGGACAAGTTTCTGAACAT  1047

seq1  ATAAGGGTGATGTCCGTTGCTTTGATCAGCTCTTAAGGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTGATGTCCGTTGCTTTGATCAGCTCTTAAGGAATTC  1090

seq1: chr8_112158961_112160043
seq2: B6Ng01-117K06.g_67_1149

seq1  GAATTCAGGACATGCCGCTGGTCTCTTCTGCACGTCTCTGGTGCTAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACATGCCGCTGGTCTCTTCTGCACGTCTCTGGTGCTAGACT  50

seq1  CATAACCTTGTTTGTAAGATAATAATAATGAATAATAGTGGTTGTGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTTGTTTGTAAGATAATAATAATGAATAATAGTGGTTGTGGATC  100

seq1  TGAGGGGGTCTTAGCCCACTGCGACTATAACGCAGCATCCTTCTCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGTCTTAGCCCACTGCGACTATAACGCAGCATCCTTCTCTGTCC  150

seq1  TAAGATGAGGAGTACACGTGGGTGCTGACACCAGAGAACCTGTGGTACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGAGGAGTACACGTGGGTGCTGACACCAGAGAACCTGTGGTACGG  200

seq1  GACTGGCACCTACTACATAATGGCTGTGGAGAATAAAAGTACAGAGGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCACCTACTACATAATGGCTGTGGAGAATAAAAGTACAGAGGCGG  250

seq1  CACAGCACACACCCGTCCTGGTCTCAGTGGTCACAGCTGTCACCCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACACACCCGTCCTGGTCTCAGTGGTCACAGCTGTCACCCAGTGC  300

seq1  TATTTCTGGGACCGATACAATAGGACATGGAAGAGCGATGGATGCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGGGACCGATACAATAGGACATGGAAGAGCGATGGATGCCAAGT  350

seq1  AAGGGATGGGAGGGGCTCTCTGAAACCTTCACTGCACCCCTCCCCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGGGAGGGGCTCTCTGAAACCTTCACTGCACCCCTCCCCCTTCC  400

seq1  ATTTTTGGGAATGGGCCAGAAACAATTCCAGTCTGAAGGGAAGCAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGGAATGGGCCAGAAACAATTCCAGTCTGAAGGGAAGCAAATCA  450

seq1  GCCTGGGACCAAATAAGAAGGTGGCCCATGGTAGCCCCTTCTTCAGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGACCAAATAAGAAGGTGGCCCATGGTAGCCCCTTCTTCAGGGTT  500

seq1  TTAAAAATAATAAAGGACTCAGGAATAATAGAAGCCACCCGTGGACCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAATAAAGGACTCAGGAATAATAGAAGCCACCCGTGGACCCCT  550

seq1  TGCCATCCTCACCCCCTCTCCTCTGTTGTGGGAAGCCACAGTCTTGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTCACCCCCTCTCCTCTGTTGTGGGAAGCCACAGTCTTGGATC  600

seq1  TTTCAAGACATACTTCATAAATACCTTACACGTGAGGTGCCCATGTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACATACTTCATAAATACCTTACACGTGAGGTGCCCATGTTAGA  650

seq1  AACTAGAGATGGAGGAATACATCAGTGACATCAGTGAAGAAGGCGCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGATGGAGGAATACATCAGTGACATCAGTGAAGAAGGCGCCATA  700

seq1  TACCAGGGCTGCCAAGCATGGGAGCCTGAGTTCAATCCCGAGAACCCGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGCTGCCAAGCATGGGAGCCTGAGTTCAATCCCGAGAACCCGTA  750

seq1  TGGGGCGAAAGGGAGAACTCACTCCTGCAAGTTGTTCTTTGGCCTCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCGAAAGGGAGAACTCACTCCTGCAAGTTGTTCTTTGGCCTCCACA  800

seq1  TAGGTCCTGTGGCCCATGCTCACACGATAAATGTTAGTATATCTATATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTGTGGCCCATGCTCACACGATAAATGTTAGTATATCTATATTA  850

seq1  TAAATGGATATCATATATAAATATAGAATATGTTATATTAATATATTACA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAATGGATATCATATATAAATATAGAATATGTTATATT-ATATATTACA  899

seq1  TTAATATAAATGGATATATAACCTGTAAATATATAATATTAATATAATAT  950
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TTAATATAAATGGATTTATAACCTGT-AATATATAATATTAATATAATAT  948

seq1  ATAATATGTAGTATATAACATACATATATATGTAGTATATATATA-TATA  999
      |||||||||||| ||| |||||||||||||||||| | ||||||| ||||
seq2  ATAATATGTAGTTTAT-ACATACATATATATGTAG-AAATATATATTATA  996

seq1  TATAT-ATATATATATATAC-ATATATATCCTTCAGGTCCTTTTCTGTTT  1047
      || || ||||| |||||||| ||    ||||||||||| || | ||||||
seq2  TACATAATATAGATATATACGATTGTAATCCTTCAGGT-CTATCCTGTTT  1045

seq1  TTCTGTCTCAAGGCTGCCTATGT-CTCCATT-CTCTAC  1083
      ||||| ||||| ||||||||||| | ||||| ||||||
seq2  TTCTGGCTCAAAGCTGCCTATGTGCCCCATTCCTCTAC  1083