BAC Information

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BAC

Clone NameB6Ng01-117K17
Chromosome8 (Build37)
Map Location 108,868,118 - 109,042,855
singlet/doubletdoublet
Overlap geneZfp90, 6030452D12Rik, Cdh3
Upstream geneFhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Downstream geneLOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K17.bB6Ng01-117K17.g
ACCDH922351DH922352
length1,1581,108
definitionDH922351|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K17, 5' end.DH922352|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,868,118 - 108,869,296)(109,041,734 - 109,042,855)
sequence
gaattcacttgagttgtttatgtgttcactcaggcatccaacaagtgttc
aaagagatgtccttgtgccctggacagtgcaggactgccttgaggaacag
tttttttacacacattatttgtaatgatggcctaagggttcatcatctgt
atcttcctatacttctgccttaagactttttttctattatcaataatgtt
attaataacttatttttattaataaacacctacaagctcatagcatgact
ttcccccaaatcattcttcatggcaaataaaatacctaaagagagagtca
ttgagtcaaagaactaaaggtgggctaaaggcgggctgggctttttggtg
ctgttgggttttttttttgttttttgttttttgttttttgttgttgtttt
tttaaggtggcaccaacttaaccagacagcagcatgaatgctgtctcttc
tagcccacattatgcatatctcatacttttgctataatacacagaataaa
acagtcctttttatctttgcatgcaatttatatccaacaagcatgcacat
ttctatttggtgcatttgtgtggttcgtgtatacatgtgcatgtgcacag
aggctagagacaagtgtcagagattccctctgtcactctccaccttcctt
tttgttgagacgggagttctcactggcaccagcaacattcctctggagga
ggagggcaagaattaaagataggaaagggggaaagaatacgcaagagaca
gatataggagggctgcaggtcaataccacgccagcagtgagtttattttt
catagcttttttatacctctcagtgtcatggggagtaaagccacaagcta
acagagaaatctgctgaaatatacacagaaaacatctgttccattcaaaa
gtcttcctattccttctaccaagatcaatagatccttcaccttgagcttc
agggcaccttctcttatctttccctgcatctgcagctgaaaatttgccat
tagacagtgatctacttgactatgcctagcagcagctgtcttttcttcct
ccctcactccattcctctatctttcttactccgtctcttacctccttctc
ttgagaggcttcgtgaaacggcttaggactctgacctcacgtacttggat
ttcactgt
gctcctgagtcagaagttaactatttctaatcttcccctagcttgtctgg
ggccagaggactttgctttccctcaaccacatggattcccacgtggttag
tactgtatacttagggaggttcaaggctggatctcacaactttctagtag
atgacactgggcaagtcacaaaattactaatgtaggttttccagctaatg
tacaaaattaccaatgtaggtagtctagctaaatggggcccattccacct
gccctggggctcttggaggattaaaggggcttatcacataaagtaacaag
tgtggttctggaatgcagtaagctctcaaaaaaatggactcaggggctgg
caagccgagtcggtggataaaggtgcttgccaccaagcctgactaactga
gtttggtccctggaagccacatggcagaaggagagaagttaactcttgca
agttgctctctgaccgccactcatgcatctatgtacgcacacgaatacaa
gacaaataaatattaataataataataaacattataaaaaataaaataaa
tgtcatttcggctgatagcttttgaccattttcctgccagttcctctgcc
caaatcaatgaagtgagaggcaaggctcaacgcaagacacatctttggtg
tgaggaaagccaggaagcgggcggcagcatgggcgaggtcagcaccttag
ctcaggaggacttccatgaggctaggaccgtgcccaagcatccggcctgc
ctttccctaacatcaccttgctatcatcgggctcagacactcccaaacag
ctctccattgctcccctgccttaaatcctatggcccagccatataggatg
tagttaaaaccctagaacccatgttgttcacctgcaggaacatcccctgc
catctctcgtgtccagcaccctagctgtttcttggcttctagctagacac
cgtttcctatggtattcccttgtagcacgtctcacttctacttcactttt
ctctcacagtggctacgagctcggactttcatacatttgctccctcacaa
ttccggcaccagatagtacttggtcaatgtcagtaattcagccttagagg
acaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108868118_108869296
seq2: B6Ng01-117K17.b_46_1203

seq1  GAATTCACTTGAGTTGTTTATGTGTTCACTCAGGCATCCAACAAGTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAGTTGTTTATGTGTTCACTCAGGCATCCAACAAGTGTTC  50

seq1  AAAGAGATGTCCTTGTGCCCTGGACAGTGCAGGACTGCCTTGAGGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGTCCTTGTGCCCTGGACAGTGCAGGACTGCCTTGAGGAACAG  100

seq1  TTTTTTTACACACATTATTTGTAATGATGGCCTAAGGGTTCATCATCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACACACATTATTTGTAATGATGGCCTAAGGGTTCATCATCTGT  150

seq1  ATCTTCCTATACTTCTGCCTTAAGACTTTTTTTCTATTATCAATAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTATACTTCTGCCTTAAGACTTTTTTTCTATTATCAATAATGTT  200

seq1  ATTAATAACTTATTTTTATTAATAAACACCTACAAGCTCATAGCATGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAACTTATTTTTATTAATAAACACCTACAAGCTCATAGCATGACT  250

seq1  TTCCCCCAAATCATTCTTCATGGCAAATAAAATACCTAAAGAGAGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAAATCATTCTTCATGGCAAATAAAATACCTAAAGAGAGAGTCA  300

seq1  TTGAGTCAAAGAACTAAAGGTGGGCTAAAGGCGGGCTGGGCTTTTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCAAAGAACTAAAGGTGGGCTAAAGGCGGGCTGGGCTTTTTGGTG  350

seq1  CTGTTGGGTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTGTTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGTTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTGTTGTTTT  400

seq1  TTTAAGGTGGCACCAACTTAACCAGACAGCAGCATGAATGCTGTCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTGGCACCAACTTAACCAGACAGCAGCATGAATGCTGTCTCTTC  450

seq1  TAGCCCACATTATGCATATCTCATACTTTTGCTATAATACACAGAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCACATTATGCATATCTCATACTTTTGCTATAATACACAGAATAAA  500

seq1  ACAGTCCTTTTTATCTTTGCATGCAATTTATATCCAACAAGCATGCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTTTTTATCTTTGCATGCAATTTATATCCAACAAGCATGCACAT  550

seq1  TTCTATTTGGTGCATTTGTGTGGTTCGTGTATACATGTGCATGTGCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTGGTGCATTTGTGTGGTTCGTGTATACATGTGCATGTGCACAG  600

seq1  AGGCTAGAGACAAGTGTCAGAGATTCCCTCTGTCACTCTCCACCTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAGACAAGTGTCAGAGATTCCCTCTGTCACTCTCCACCTTCCTT  650

seq1  TTTGTTGAGACGGGAGTTCTCACTGGCACCAGCAACATTCCTCTGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAGACGGGAGTTCTCACTGGCACCAGCAACATTCCTCTGGAGGA  700

seq1  GGAGGGCAAGAATTAAAGATAGGAAAGGGGGAAAGAATACGCAAGAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCAAGAATTAAAGATAGGAAAGGGGGAAAGAATACGCAAGAGACA  750

seq1  GATATAGGAGGGCTGCAGGTCAATACCACGCCAGCAGTGAGTTTATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGGAGGGCTGCAGGTCAATACCACGCCAGCAGTGAGTTTATTTTT  800

seq1  CATAGCTTTTTTATACCTCTCAGTGTCATGGGGAGTAAAGCCACAAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTTTTTTATACCTCTCAGTGTCATGGGGAGTAAAGCCACAAGCTA  850

seq1  ACAGAGAAATCTGCTGAAATATACACAGAAAACATCTGTTCCCATTCAAA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGAGAAATCTGCTGAAATATACACAGAAAACATCTGTT-CCATTCAAA  899

seq1  AGTCTCCCTATTCCTTCTACCAAGATCAATAGATCCTTCAACCTTGAGCC  950
      ||||| ||||||||||||||||||||||||||||||||| |||||||| |
seq2  AGTCTTCCTATTCCTTCTACCAAGATCAATAGATCCTTC-ACCTTGAG-C  947

seq1  TCCAGGGCACCTTCTCTTATCTTTCCCTGCATCTGCAGGCTGAAAAATTT  1000
      | ||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  TTCAGGGCACCTTCTCTTATCTTTCCCTGCATCTGCA-GCTG-AAAATTT  995

seq1  GCCAATAGACAGTGATCTACCTTGACTATGCCTAGCAGGCAGGCTTGTCT  1050
      |||| |||||||||||||| ||||||||||||||||| ||||   |||||
seq2  GCCATTAGACAGTGATCTA-CTTGACTATGCCTAGCA-GCAG--CTGTCT  1041

seq1  TTTCTCTCTCTCTCTCTCCCTTTCTCTCTCTCTCTCTCTCTCCCTCTCTC  1100
      |||||  ||| ||| |||| ||   |||| ||| |||  |||| ||||| 
seq2  TTTCTTCCTCCCTCACTCCATT--CCTCTATCTTTCTTACTCCGTCTCT-  1088

seq1  TCTCTCCTCTCCTCTCTCTTGAGGCTTCGGAGAAACAGGCTTAGGACTCC  1150
      |  |||||    |||||   |||||||| | ||||| ||||||||||| |
seq2  TACCTCCT----TCTCTTGAGAGGCTTC-GTGAAAC-GGCTTAGGACT-C  1131

seq1  TGACACTCACTGTACTTGGATTTCACTGT  1179
      |||| ||||| ||||||||||||||||||
seq2  TGAC-CTCAC-GTACTTGGATTTCACTGT  1158

seq1: chr8_109041734_109042855
seq2: B6Ng01-117K17.g_76_1183 (reverse)

seq1  TTCTTTGTCCTCTTTAGTGCTGTGATTACTGGCATGTGCCAGGTACTGAT  50
      ||||||||||||  ||  ||||  ||||||| |||   ||| ||||| ||
seq2  TTCTTTGTCCTC--TAAGGCTG-AATTACTGACATTGACCAAGTACT-AT  46

seq1  CTGGGTGCCCGGGATATGTGAGTGAGCAAATGTATGAAAGTCCCGAGCTT  100
      || ||||||  |||  |||||| |||||||||||||||||| |||||| |
seq2  CT-GGTGCC--GGAATTGTGAGGGAGCAAATGTATGAAAGT-CCGAGC-T  91

seq1  CGTAGGCCACTGTGAGAGAAAAGTGGAGTAGGAAGTGAGACGGTGCTAAC  150
      |||| |||||||||||||||||||| |||| |||||||||| ||||| ||
seq2  CGTA-GCCACTGTGAGAGAAAAGTGAAGTA-GAAGTGAGAC-GTGCT-AC  137

seq1  AAGGGAATACCATAGGAAACGGTGTCTTAGCTAGAAGCCAAGAAACAGCT  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGGAATACCATAGGAAACGGTGTC-TAGCTAGAAGCCAAGAAACAGCT  186

seq1  AGGGTGCTGGACACGAGAGATGGCAGGGGATGTTCCTGCAGGTGAACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTGGACACGAGAGATGGCAGGGGATGTTCCTGCAGGTGAACAAC  236

seq1  ATGGGTTCTAGGGTTTTAACTACATCCTATATGGCTGGGCCATAGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCTAGGGTTTTAACTACATCCTATATGGCTGGGCCATAGGATTT  286

seq1  AAGGCAGGGGAGCAATGGAGAGCTGTTTGGGAGTGTCTGAGCCCGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGGAGCAATGGAGAGCTGTTTGGGAGTGTCTGAGCCCGATGAT  336

seq1  AGCAAGGTGATGTTAGGGAAAGGCAGGCCGGATGCTTGGGCACGGTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGTGATGTTAGGGAAAGGCAGGCCGGATGCTTGGGCACGGTCCTA  386

seq1  GCCTCATGGAAGTCCTCCTGAGCTAAGGTGCTGACCTCGCCCATGCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGGAAGTCCTCCTGAGCTAAGGTGCTGACCTCGCCCATGCTGCC  436

seq1  GCCCGCTTCCTGGCTTTCCTCACACCAAAGATGTGTCTTGCGTTGAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCTTCCTGGCTTTCCTCACACCAAAGATGTGTCTTGCGTTGAGCCT  486

seq1  TGCCTCTCACTTCATTGATTTGGGCAGAGGAACTGGCAGGAAAATGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCACTTCATTGATTTGGGCAGAGGAACTGGCAGGAAAATGGTCA  536

seq1  AAAGCTATCAGCCGAAATGACATTTATTTTATTTTTTATAATGTTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATCAGCCGAAATGACATTTATTTTATTTTTTATAATGTTTATTA  586

seq1  TTATTATTAATATTTATTTGTCTTGTATTCGTGTGCGTACATAGATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAATATTTATTTGTCTTGTATTCGTGTGCGTACATAGATGCAT  636

seq1  GAGTGGCGGTCAGAGAGCAACTTGCAAGAGTTAACTTCTCTCCTTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCGGTCAGAGAGCAACTTGCAAGAGTTAACTTCTCTCCTTCTGCC  686

seq1  ATGTGGCTTCCAGGGACCAAACTCAGTTAGTCAGGCTTGGTGGCAAGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTTCCAGGGACCAAACTCAGTTAGTCAGGCTTGGTGGCAAGCAC  736

seq1  CTTTATCCACCGACTCGGCTTGCCAGCCCCTGAGTCCATTTTTTTGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCACCGACTCGGCTTGCCAGCCCCTGAGTCCATTTTTTTGAGAG  786

seq1  CTTACTGCATTCCAGAACCACACTTGTTACTTTATGTGATAAGCCCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCATTCCAGAACCACACTTGTTACTTTATGTGATAAGCCCCTTT  836

seq1  AATCCTCCAAGAGCCCCAGGGCAGGTGGAATGGGCCCCATTTAGCTAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCAAGAGCCCCAGGGCAGGTGGAATGGGCCCCATTTAGCTAGAC  886

seq1  TACCTACATTGGTAATTTTGTACATTAGCTGGAAAACCTACATTAGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACATTGGTAATTTTGTACATTAGCTGGAAAACCTACATTAGTAAT  936

seq1  TTTGTGACTTGCCCAGTGTCATCTACTAGAAAGTTGTGAGATCCAGCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTTGCCCAGTGTCATCTACTAGAAAGTTGTGAGATCCAGCCTT  986

seq1  GAACCTCCCTAAGTATACAGTACTAACCACGTGGGAATCCATGTGGTTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCCTAAGTATACAGTACTAACCACGTGGGAATCCATGTGGTTGA  1036

seq1  GGGAAAGCAAAGTCCTCTGGCCCCAGACAAGCTAGGGGAAGATTAGAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCAAAGTCCTCTGGCCCCAGACAAGCTAGGGGAAGATTAGAAAT  1086

seq1  AGTTAACTTCTGACTCAGGAGC  1122
      ||||||||||||||||||||||
seq2  AGTTAACTTCTGACTCAGGAGC  1108