BAC Information

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BAC

Clone NameB6Ng01-118E13
Chromosome8 (Build37)
Map Location 13,745,750 - 13,746,829
singlet/doubletsinglet
Overlap geneLOC665516
Upstream geneAtp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik
Downstream geneCdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E13.bB6Ng01-118E13.g
ACCDH922804DH922805
length1,0771,027
definitionDH922804|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E13, 5' end.DH922805|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttactaggtattagttcaggcagatgccctggttctgcgattc
cttctccctataggtcacagttgagcgggtttcttcagaagagcctgtgg
ggctgagagtgctgagccccagggtcagaagcagaactggaaagcctcca
atacatgctgcttccttgtttccaggctgggcagcagggaggagaggccc
gtgacgtgccagggctctccgtcagacaccatggaggtttggtaggacag
cagctatacacccccctctgccaagaggccaatcatagtgggcaccatca
cacagttagagggctgagcccggaatatgagcaggggttggcacctgcgt
agtggcacctctggtctgaagacagctctgttgagcatctgcagcattgg
tgtggtgccctggaccaagcccacagcttggtagggggcacctgccaggg
ccacagtcaggaggcattccccgctgccctgctcccctggaaccccaggg
ttgtgggaggtggtgacattgaggccagcctctttcaccagtagcttagc
gttcaccaagttcatgtctgtctgcttagatgcttctctcagaaggccga
caatgactgcagggctcaggcaggtcccagcattcttcagagatgttcct
tgtgcaaccacctggatggtccctttaggggagtcagcccaggcatgcat
cagcatgcccattgcttctgccagatcaatccaaggcttggtgtgtggag
agaaggcactggtgagggcctgggcgttcacgacacctgttagagatttc
cccttcaccatgtccacaaactggactacgatttcctccccacagcagct
ctgggcttccttggtgctggcacccaggtggggacagctgatgacattct
cgtggtccactaaggcctggtcccgtggcggctcttctgtaaacacatcc
agtgcagccccagcacactgaccagactgcaggcacgcggcaaggcactt
catccacgatgcctctcgagcacagttcaccacttcgcacgactttcttg
ccactggagcaaagtgcttcatcagca
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtggtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggagcatgcagagatttttccttctaagg
tgaaagataagttattgcacctggccctctcctacaaccaagaaagaagc
acaacgtttagtgggcctatttggattctggagacaacacatccctcact
tgggtgtgttacttaaggcctatttacaagtgactcgaaagcttcctagc
tttgtgtggggcctggaacagaagaaggccttcaacaggtccaggctgct
gtgcagctgctctaccacttggacatatgacccagccgacccgattgtac
tgaggttctgttgctgataagagaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13745750_13746829
seq2: B6Ng01-118E13.b_46_1122

seq1  GAATTCTTTACTAGGTATTAGTTCAGGCAGATGCCCTGGTTCTGCGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTAGGTATTAGTTCAGGCAGATGCCCTGGTTCTGCGATTC  50

seq1  CTTCTCCCTATAGGTCACAGTTGAGCGGGTTTCTTCAGAAGAGCCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTATAGGTCACAGTTGAGCGGGTTTCTTCAGAAGAGCCTGTGG  100

seq1  GGCTGAGAGTGCTGAGCCCCAGGGTCAGAAGCAGAACTGGAAAGCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAGTGCTGAGCCCCAGGGTCAGAAGCAGAACTGGAAAGCCTCCA  150

seq1  ATACATGCTGCTTCCTTGTTTCCAGGCTGGGCAGCAGGGAGGAGAGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCTGCTTCCTTGTTTCCAGGCTGGGCAGCAGGGAGGAGAGGCCC  200

seq1  GTGACGTGCCAGGGCTCTCCGTCAGACACCATGGAGGTTTGGTAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTGCCAGGGCTCTCCGTCAGACACCATGGAGGTTTGGTAGGACAG  250

seq1  CAGCTATACACCCCCCTCTGCCAAGAGGCCAATCATAGTGGGCACCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATACACCCCCCTCTGCCAAGAGGCCAATCATAGTGGGCACCATCA  300

seq1  CACAGTTAGAGGGCTGAGCCCGGAATATGAGCAGGGGTTGGCACCTGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTAGAGGGCTGAGCCCGGAATATGAGCAGGGGTTGGCACCTGCGT  350

seq1  AGTGGCACCTCTGGTCTGAAGACAGCTCTGTTGAGCATCTGCAGCATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACCTCTGGTCTGAAGACAGCTCTGTTGAGCATCTGCAGCATTGG  400

seq1  TGTGGTGCCCTGGACCAAGCCCACAGCTTGGTAGGGGGCACCTGCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGCCCTGGACCAAGCCCACAGCTTGGTAGGGGGCACCTGCCAGGG  450

seq1  CCACAGTCAGGAGGCATTCCCCGCTGCCCTGCTCCCCTGGAACCCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCAGGAGGCATTCCCCGCTGCCCTGCTCCCCTGGAACCCCAGGG  500

seq1  TTGTGGGAGGTGGTGACATTGAGGCCAGCCTCTTTCACCAGTAGCTTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGGTGGTGACATTGAGGCCAGCCTCTTTCACCAGTAGCTTAGC  550

seq1  GTTCACCAAGTTCATGTCTGTCTGCTTAGATGCTTCTCTCAGAAGGCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCAAGTTCATGTCTGTCTGCTTAGATGCTTCTCTCAGAAGGCCGA  600

seq1  CAATGACTGCAGGGCTCAGGCAGGTCCCAGCATTCTTCAGAGATGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTGCAGGGCTCAGGCAGGTCCCAGCATTCTTCAGAGATGTTCCT  650

seq1  TGTGCAACCACCTGGATGGTCCCTTTAGGGGAGTCAGCCCAGGCATGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACCACCTGGATGGTCCCTTTAGGGGAGTCAGCCCAGGCATGCAT  700

seq1  CAGCATGCCCATTGCTTCTGCCAGATCAATCCAAGGCTTGGTGTGTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCCCATTGCTTCTGCCAGATCAATCCAAGGCTTGGTGTGTGGAG  750

seq1  AGAAGGCACTGGTGAGGGCCTGGGCGTTCACGACACCTGTTAGAGATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCACTGGTGAGGGCCTGGGCGTTCACGACACCTGTTAGAGATTTC  800

seq1  CCCTTCACCATGTCCACAAACTGGACTACGATTTCCTCCCCACAGCAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACCATGTCCACAAACTGGACTACGATTTCCTCCCCACAGCAGCT  850

seq1  CTGGGCTTCCTTGGTGCTGGCACCCAGGTGGGGACAGCTGATGACATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCCTTGGTGCTGGCACCCAGGTGGGGACAGCTGATGACATTCT  900

seq1  CGTGGTCCACTAAGGCCTGGTCCCGTGGCGGCTCTTCTGTAAACACATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCCACTAAGGCCTGGTCCCGTGGCGGCTCTTCTGTAAACACATCC  950

seq1  AGTGCAGCCCCAGCACACTGACCAGACTGCAGGGCACGCGGCAGGGCACC  1000
      ||||||||||||||||||||||||||||||| ||||||||||| |||| |
seq2  AGTGCAGCCCCAGCACACTGACCAGACTGCA-GGCACGCGGCAAGGCA-C  998

seq1  TTCATCCACGATGCCTCCTCGAGCACAGTTCACCAC-TCGCACGACTTTC  1049
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  TTCATCCACGATGCCT-CTCGAGCACAGTTCACCACTTCGCACGACTTTC  1047

seq1  TTG-CACT-GAGCAAAGGTGCTGTCATTCAGCA  1080
      ||| |||| ||||||| ||||| ||| ||||||
seq2  TTGCCACTGGAGCAAA-GTGCT-TCA-TCAGCA  1077