BAC Information

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BAC

Clone NameB6Ng01-118G03
Chromosome1 (Build37)8 (Build37)
Map Location 164,856,422 - 164,857,57198,509,863 - 98,510,114
singlet/doubletsingletsinglet
Overlap geneFmo6
Upstream genePigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2
Downstream geneFmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118G03.bB6Ng01-118G03.g
ACCDH922876DH922877
length1,140447
definitionDH922876|Mus musculus domesticus DNA, BAC clone: B6Ng01-118G03, 5' end.DH922877|Mus musculus domesticus DNA, BAC clone: B6Ng01-118G03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(164,856,422 - 164,857,571)(98,509,863 - 98,510,114)
sequence
gaattcttcctttctgtcttgcagtattttcctatggaggaaataatgat
ataagatgacccagtcattgaaaaatatataaaaaggcaccaatatgagg
gtcagagcacatccttagtgaatcttcaaatcttgcacagaaaactactt
ctgagggtttacttagtattgaacatctggtaagttgatgtggaataaat
aatgctcgggcatttttatgagtatagcaaacatgtcatttgcttacagc
tgctcgacagtgactccactttctcctctgctgacctcatcttctaccca
ctcagtaaatacagctgtgtctcaaggtttgaccccaggtctcttctgtt
ctctgtacagattctctccagaaatacaagcaacttccacagcacatatg
cctatacatattttgagcctgttcatcctctgctagctagtctagctttc
caactgcaaaaccatagtgctgcctctattgaagcatattaataactgac
ctacctccattttctccctacctatatttgattttcccacttcttagaat
aatgaaactaaccaccctgttacctaagcttcatgtctacataaacattg
atctcagagatacagtattgcttttattcattccatgacctcaaatgctg
cattgcttcaaagtcttataaaaccatgaagatggcttcaagagtttata
cccacttgctacttggaatgcttcattctgcttataggagtactcttctg
acaggactgcattgattctgtgtttctgcctcaaagttatttctgataca
tcacagtctcatttatggtgattgagcatagggctcacatgtgctaggta
cacactctaccacggaggacgcccatataattccttatatctaagcctat
gatcgaaagtcttgagtaattatgcccttgtttgttttaccttctgctgt
ttctacagactcccctgggacagcgactgttaattttttccgtgtccatc
tatttctttcttattaacagcacctgatttgttggagcgactatgtacct
agcaatgggacccacttttagcctcatgtaacaaacaggcctattgagaa
atgaagcgaattcgtcccatagcttttcacgaattgtgaa
ccgggatctcggcaccagatgtgtctgtgatgatatggagtctcgccagc
gaggacacacacacaggacacacatgggttcttctgcagcatagctttaa
tgcatctcgagagaaagatgattagcttctgggggaggaggcccagaaca
caggaaactcggtccttaaatagaccacaagaggggttggagacatattt
caccctgactggctgctcactatcagcccagatgacgccacgggacaggc
agggcacaaagaatggaaaaatactccagcacatacgcagactacttgtt
taccagttagaacaccggatatcagtgccatcttgtaatggtgattgcaa
gggcagctcctcacaagaaagaaagaagagagagagagagagagagagag
agagagagagagagagagagagagagagagaaagggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_164856422_164857571
seq2: B6Ng01-118G03.b_47_1186

seq1  GAATTCTTCCTTTCTGTCTTGCAGTATTTTCCTATGGAGGAAATAATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTTCTGTCTTGCAGTATTTTCCTATGGAGGAAATAATGAT  50

seq1  ATAAGATGACCCAGTCATTGAAAAATATATAAAAAGGCACCAATATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGACCCAGTCATTGAAAAATATATAAAAAGGCACCAATATGAGG  100

seq1  GTCAGAGCACATCCTTAGTGAATCTTCAAATCTTGCACAGAAAACTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGCACATCCTTAGTGAATCTTCAAATCTTGCACAGAAAACTACTT  150

seq1  CTGAGGGTTTACTTAGTATTGAACATCTGGTAAGTTGATGTGGAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTTTACTTAGTATTGAACATCTGGTAAGTTGATGTGGAATAAAT  200

seq1  AATGCTCGGGCATTTTTATGAGTATAGCAAACATGTCATTTGCTTACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCGGGCATTTTTATGAGTATAGCAAACATGTCATTTGCTTACAGC  250

seq1  TGCTCGACAGTGACTCCACTTTCTCCTCTGCTGACCTCATCTTCTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGACAGTGACTCCACTTTCTCCTCTGCTGACCTCATCTTCTACCCA  300

seq1  CTCAGTAAATACAGCTGTGTCTCAAGGTTTGACCCCAGGTCTCTTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAATACAGCTGTGTCTCAAGGTTTGACCCCAGGTCTCTTCTGTT  350

seq1  CTCTGTACAGATTCTCTCCAGAAATACAAGCAACTTCCACAGCACATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACAGATTCTCTCCAGAAATACAAGCAACTTCCACAGCACATATG  400

seq1  CCTATACATATTTTGAGCCTGTTCATCCTCTGCTAGCTAGTCTAGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACATATTTTGAGCCTGTTCATCCTCTGCTAGCTAGTCTAGCTTTC  450

seq1  CAACTGCAAAACCATAGTGCTGCCTCTATTGAAGCATATTAATAACTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAAAACCATAGTGCTGCCTCTATTGAAGCATATTAATAACTGAC  500

seq1  CTACCTCCATTTTCTCCCTACCTATATTTGATTTTCCCACTTCTTAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCATTTTCTCCCTACCTATATTTGATTTTCCCACTTCTTAGAAT  550

seq1  AATGAAACTAACCACCCTGTTACCTAAGCTTCATGTCTACATAAACATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTAACCACCCTGTTACCTAAGCTTCATGTCTACATAAACATTG  600

seq1  ATCTCAGAGATACAGTATTGCTTTTATTCATTCCATGACCTCAAATGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGATACAGTATTGCTTTTATTCATTCCATGACCTCAAATGCTG  650

seq1  CATTGCTTCAAAGTCTTATAAAACCATGAAGATGGCTTCAAGAGTTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCAAAGTCTTATAAAACCATGAAGATGGCTTCAAGAGTTTATA  700

seq1  CCCACTTGCTACTTGGAATGCTTCATTCTGCTTATAGGAGTACTCTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTGCTACTTGGAATGCTTCATTCTGCTTATAGGAGTACTCTTCTG  750

seq1  ACAGGACTGCATTGATTCTGTGTTTCTGCCTCAAAGTTATTTCTGATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGCATTGATTCTGTGTTTCTGCCTCAAAGTTATTTCTGATACA  800

seq1  TCACAGTCTCATTTATGGTGATTGAGCATAGGGCTCACATGTGCTAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTCTCATTTATGGTGATTGAGCATAGGGCTCACATGTGCTAGGTA  850

seq1  CACACTCTACCACGGAGGACGCCCATATAATTCCTTATATCTAAGCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTACCACGGAGGACGCCCATATAATTCCTTATATCTAAGCCTAT  900

seq1  GATCGAAAGTCTTGAGTAATTATGCCCTTGTTTGTTTTTACCTTCTGCTG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATCGAAAGTCTTGAGTAATTATGCCCTTGTTTG-TTTTACCTTCTGCTG  949

seq1  TTTCTACAGACTCCCCTGGGACAGCGACTGTTAATTTTTTTCCGGTGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  TTTCTACAGACTCCCCTGGGACAGCGACTGTTAATTTTTT--CCGTGTCC  997

seq1  ATCTATTTCTTTCTTATTAACAGCACCTGATTTTGTTTGGAGCGACTATG  1050
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  ATCTATTTCTTTCTTATTAACAGCACCTGATTT--GTTGGAGCGACTATG  1045

seq1  TACCTAGCAATGGGACCCACTTTTAGGCCCTCATGTAACAACAGGGGCCT  1100
      ||||||||||||||||||||||||||  ||||||||||||| |  |||||
seq2  TACCTAGCAATGGGACCCACTTTTAG--CCTCATGTAACAA-ACAGGCCT  1092

seq1  A-TGAGATA-GAAGCAGATATCGTCCCATAGGCTTTTCACCAGAGTTGTG  1148
      | ||||| | ||||| ||  |||||||||| |||||||||  || |||||
seq2  ATTGAGAAATGAAGC-GAATTCGTCCCATA-GCTTTTCAC--GAATTGTG  1138

seq1  AA  1150
      ||
seq2  AA  1140

seq1: chr8_98509863_98510114
seq2: B6Ng01-118G03.g_438_518 (reverse)

seq1  CCTCCCTCCCTCCCTCCCTCTCTCTCTTTCTTCCTCCCTTTCTTCCTCCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTG  150
                                  ||| ||| ||| ||||||| | 
seq2  ----------------------------CCTCCCTCCCTCCCTTTCTCTC  22

seq1  TTTCTTTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTCTCTCTCTC  200
      | ||| ||||||||||||||||||| ||| ||| ||| ||||||||||| 
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-  71

seq1  TCTTTCTTTCTTTCTCTCTTTCTCCCTTTCTCTCTCTTTCTCTCTTTCTT  250
      ||||||||||                                        
seq2  TCTTTCTTTC----------------------------------------  81

seq1  TC  252
        
seq2  --  81