BAC Information

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BAC

Clone NameB6Ng01-118J24
Chromosome8 (Build37)
Map Location 49,566,329 - 49,715,025
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneD030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118J24.bB6Ng01-118J24.g
ACCDH923053DH923054
length1,1071,106
definitionDH923053|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J24, 5' end.DH923054|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,566,329 - 49,567,461)(49,713,910 - 49,715,025)
sequence
gaattctttgcgccaacaacaaccgacctgctacagttagcagaagatat
aattctgtctaatccacaagcacttagaggggcatggtaacaaggcctgc
tggttctcaaataataatccagagtcccttgtacgaagtgcatccgtcct
cagcatcagaaacaacttccacgctatcagtaaatcccaaccccttaaat
cgctccataaagctgtggctggactcggcctacctttcaccgagctcaaa
gagcctgcgaaaataaataaccgcattcaatatttcatttttaaagaaaa
cggcaatttaaaagggggaaaacatttagtctaatgagactgatctgacg
gtaagaaggtggtaaatggctcagcctcttggtgtattattaactctttc
tggccacttggggaacattctgagtactgtactaaaagaggtaatttact
aaatggtaccctaatggccagaaagagttaatgtggtaatcaaaaatgag
caatttactgctcatcaactaaccgagctcagtaaattcttttttttttt
tttttttattaaaatgcctctgatactgttcaagtggaattttaattgaa
aaactgaaagccatttagctgagaatgcggtagggtggatattacaaccg
attaatccaagaaaagtaacggcgtgtctaaccaaagaaatacaagctac
aactcttgagtctgcgcctaccagcatcgaggccaacgccactagcgttg
ttgaatgccttttatacgccagccactccaccaatacggcagccactcca
ccagaagatgtgcgtgtggacttcaatgtttcaaaggatgcgttcgtgat
cagaagtggagctatagaaaggtggtggtgtagggacgctgggactagaa
gccaagctatcagattctgcgggccatgacggttgacttcaaactgcact
gcctctcatacagacagggcgaaattagcttactcgctctcaaatgtgga
gagtgaaagagtttattatcaaatgtcatccagagaatttcatgtagcct
agtgccaccacgctgtaaatctgctagcctgcttttttccccaaagaggg
ggcgggt
gaattctcgtatgttctgtttcactatccattcatcagctgaacaacatg
gagactgtatttatttcctagctagtataagtatggtggcaatgaacacg
accaagcaagtctccctgtagttgaatcctggattccttgggcatgtgcc
atggagtggtctagttgggtcttttgatagatctgcttttagttgttttt
aagttgccttgtgggtaccttgtcatagtcacagaaaagtaactcacatg
cctacacacacacacacacacacacacacacacacacacacccagcttct
ctgtagttgagcacctgctaatccgcacaggaagagagtgtagatctcct
cagagaaatgacatttctgtgaggccgaaagaggtttgtgtgtgccatgc
atgtcaccatgagtgcctcgtgcatgtcaccatgagtgcctcgtgcatgt
cgccatgagtgtctgtgtgactgaatttactctacactccttagtttaaa
ccattgccctactgtattaagaaaagtgttctagaaacgcaatggctgaa
gttaacttgactggaagtttcttattctagctttataattaatgcactgc
tttacctacagtctgtgactctaatgtccctcaaatttgtatcttcatgt
agaaccatttctacatgtgttaatttggggtaagatgaccaatctaattt
caccaagctttctcttggggatatacctcaagaggaagttaatgtaggtc
gagatgggtccaatcaagtcaaggtgtgacaattactaaagaaagatctc
atatgctaactaagatgataagaaaggttgatttcagcatcagtgaagca
tcctttgggtctcttttgtttctgtgcctccacatacttgctgctttgta
caaaatgtccctatgtcctttgcactaatgtgatgtcactaatatctacc
aagttctatctttccaactacattttttctaatttccaagtacattcctg
agtcattacagagttctgaaatgtgtatgtttcgacactatgatgtcatt
cagtaatagcaatgttttatgctttttaacattagaacggtgctagtagt
ctatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49566329_49567461
seq2: B6Ng01-118J24.b_49_1155

seq1  GAATTCTTTGCGCCAACAACAACCGACCTGCTACAGTTAGCAGAAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCGCCAACAACAACCGACCTGCTACAGTTAGCAGAAGATAT  50

seq1  AATTCTGTCTAATCCACAAGCACTTAGAGGGGCATGGTAACAAGGCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTCTAATCCACAAGCACTTAGAGGGGCATGGTAACAAGGCCTGC  100

seq1  TGGTTCTCAAATAATAATCCAGAGTCCCTTGTACGAAGTGCATCCGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCAAATAATAATCCAGAGTCCCTTGTACGAAGTGCATCCGTCCT  150

seq1  CAGCATCAGAAACAACTTCCACGCTATCAGTAAATCCCAACCCCTTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAGAAACAACTTCCACGCTATCAGTAAATCCCAACCCCTTAAAT  200

seq1  CGCTCCATAAAGCTGTGGCTGGACTCGGCCTACCTTTCACCGAGCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCATAAAGCTGTGGCTGGACTCGGCCTACCTTTCACCGAGCTCAAA  250

seq1  GAGCCTGCGAAAATAAATAACCGCATTCAATATTTCATTTTTAAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCGAAAATAAATAACCGCATTCAATATTTCATTTTTAAAGAAAA  300

seq1  CGGCAATTTAAAAGGGGGAAAACATTTAGTCTAATGAGACTGATCTGACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAATTTAAAAGGGGGAAAACATTTAGTCTAATGAGACTGATCTGACG  350

seq1  GTAAGAAGGTGGTAAATGGCTCAGCCTCTTGGTGTATTATTAACTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGTGGTAAATGGCTCAGCCTCTTGGTGTATTATTAACTCTTTC  400

seq1  TGGCCACTTGGGGAACATTCTGAGTACTGTACTAAAAGAGGTAATTTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTTGGGGAACATTCTGAGTACTGTACTAAAAGAGGTAATTTACT  450

seq1  AAATGGTACCCTAATGGCCAGAAAGAGTTAATGTGGTAATCAAAAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTACCCTAATGGCCAGAAAGAGTTAATGTGGTAATCAAAAATGAG  500

seq1  CAATTTACTGCTCATCAACTAACCGAGCTCAGTAAATTCTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACTGCTCATCAACTAACCGAGCTCAGTAAATTCTTTTTTTTTTT  550

seq1  TTTTTTTATTAAAATGCCTCTGATACTGTTCAAGTGGAATTTTAATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTAAAATGCCTCTGATACTGTTCAAGTGGAATTTTAATTGAA  600

seq1  AAACTGAAAGCCATTTAGCTGAGAATGCGGTAGGGTGGATATTACAACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAGCCATTTAGCTGAGAATGCGGTAGGGTGGATATTACAACCG  650

seq1  ATTAATCCAAGAAAAGTAACGGCGTGTCTAACCAAAGAAATACAAGCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCAAGAAAAGTAACGGCGTGTCTAACCAAAGAAATACAAGCTAC  700

seq1  AACTCTTGAGTCTGCGCCTACCAGCATCGAGGCCAACGCCACTAGCGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGAGTCTGCGCCTACCAGCATCGAGGCCAACGCCACTAGCGTTG  750

seq1  TTGAATGCCTTTTATACGCCAGCCACTCCACCAATACGGCAGCCACTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCCTTTTATACGCCAGCCACTCCACCAATACGGCAGCCACTCCA  800

seq1  CCAGAAGATGTGCGTGTGGACTTCAATGTTTCAAAGGATGCGTTCGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGTGCGTGTGGACTTCAATGTTTCAAAGGATGCGTTCGTGAT  850

seq1  CAGAAGTGGAGCTATAGAAAGGTGGTGGTGTAGGGACGCTGGGACTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGGAGCTATAGAAAGGTGGTGGTGTAGGGACGCTGGGACTAGAA  900

seq1  GCCAAGCTATCAGATTCTGCGGGCCATGACGGTTGACTTCAAACTGCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTATCAGATTCTGCGGGCCATGACGGTTGACTTCAAACTGCACT  950

seq1  GCCTCTCATTACAGACAGGGGCGAAATTAGCTTACTCGCTCTCCAAATGT  1000
      |||||||| |||||||| |||||||||||||||||||||||| |||||||
seq2  GCCTCTCA-TACAGACA-GGGCGAAATTAGCTTACTCGCTCT-CAAATGT  997

seq1  GGAGGAGTTGAAAGAGTTTATTAATCAAATGTCCATTCCAGAGAATTTTC  1050
      ||| ||| |||||||||||||| ||||||||||   ||||||||||||  
seq2  GGA-GAG-TGAAAGAGTTTATT-ATCAAATGTC--ATCCAGAGAATTT--  1040

seq1  AATGTAGCCTTAGTGCCAACAACGCTTGTAAATTCTGCTAGGCTTTGGCC  1100
       |||||||| ||||||| || |||| |||||| |||||||       |||
seq2  CATGTAGCC-TAGTGCC-ACCACGC-TGTAAA-TCTGCTA-------GCC  1079

seq1  TTTTTTTTTCCCCCAAAAAAAGAGGGGGCGGGT  1133
      |  ||||||||||     |||||||||||||||
seq2  TGCTTTTTTCCCC-----AAAGAGGGGGCGGGT  1107

seq1: chr8_49713910_49715025
seq2: B6Ng01-118J24.g_71_1176 (reverse)

seq1  GCATAGACTACTAAGCACGTTTTCTAAATGTATAAAATAGCATAAACATT  50
      |||||||||||| |||||   |||| ||||| ||||| |||||||| |  
seq2  GCATAGACTACT-AGCAC-CGTTCT-AATGT-TAAAA-AGCATAAA-ACA  44

seq1  TTGCTATTTACCTGAATGACATCATTAGTGTCGAAACATACACATTTCAG  100
      ||||||||   ||||||||||||| |||||||||||||||||||||||||
seq2  TTGCTATT--ACTGAATGACATCA-TAGTGTCGAAACATACACATTTCAG  91

seq1  AACTCTGTAATGACTCAGGAATGTACTTGGAAATTTAGAAAAAATGTAGT  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACTCTGTAATGACTCAGGAATGTACTTGGAAA-TTAGAAAAAATGTAGT  140

seq1  TGGAAAGATAGAACTTGGTAGATATTAGTGACATCACATTAGTGCAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGATAGAACTTGGTAGATATTAGTGACATCACATTAGTGCAAAGG  190

seq1  ACATAGGGACATTTTGTACAAAGCAGCAAGTATGTGGAGGCACAGAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGGACATTTTGTACAAAGCAGCAAGTATGTGGAGGCACAGAAACA  240

seq1  AAAGAGACCCAAAGGATGCTTCACTGATGCTGAAATCAACCTTTCTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCCAAAGGATGCTTCACTGATGCTGAAATCAACCTTTCTTATC  290

seq1  ATCTTAGTTAGCATATGAGATCTTTCTTTAGTAATTGTCACACCTTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTTAGCATATGAGATCTTTCTTTAGTAATTGTCACACCTTGACT  340

seq1  TGATTGGACCCATCTCGACCTACATTAACTTCCTCTTGAGGTATATCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGACCCATCTCGACCTACATTAACTTCCTCTTGAGGTATATCCCC  390

seq1  AAGAGAAAGCTTGGTGAAATTAGATTGGTCATCTTACCCCAAATTAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGCTTGGTGAAATTAGATTGGTCATCTTACCCCAAATTAACAC  440

seq1  ATGTAGAAATGGTTCTACATGAAGATACAAATTTGAGGGACATTAGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAATGGTTCTACATGAAGATACAAATTTGAGGGACATTAGAGTC  490

seq1  ACAGACTGTAGGTAAAGCAGTGCATTAATTATAAAGCTAGAATAAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTAGGTAAAGCAGTGCATTAATTATAAAGCTAGAATAAGAAAC  540

seq1  TTCCAGTCAAGTTAACTTCAGCCATTGCGTTTCTAGAACACTTTTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCAAGTTAACTTCAGCCATTGCGTTTCTAGAACACTTTTCTTAA  590

seq1  TACAGTAGGGCAATGGTTTAAACTAAGGAGTGTAGAGTAAATTCAGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGGGCAATGGTTTAAACTAAGGAGTGTAGAGTAAATTCAGTCAC  640

seq1  ACAGACACTCATGGCGACATGCACGAGGCACTCATGGTGACATGCACGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACTCATGGCGACATGCACGAGGCACTCATGGTGACATGCACGAG  690

seq1  GCACTCATGGTGACATGCATGGCACACACAAACCTCTTTCGGCCTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCATGGTGACATGCATGGCACACACAAACCTCTTTCGGCCTCACAG  740

seq1  AAATGTCATTTCTCTGAGGAGATCTACACTCTCTTCCTGTGCGGATTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATTTCTCTGAGGAGATCTACACTCTCTTCCTGTGCGGATTAGC  790

seq1  AGGTGCTCAACTACAGAGAAGCTGGGTGTGTGTGTGTGTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCAACTACAGAGAAGCTGGGTGTGTGTGTGTGTGTGTGTGTGTG  840

seq1  TGTGTGTGTGTGTAGGCATGTGAGTTACTTTTCTGTGACTATGACAAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTAGGCATGTGAGTTACTTTTCTGTGACTATGACAAGGT  890

seq1  ACCCACAAGGCAACTTAAAAACAACTAAAAGCAGATCTATCAAAAGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAAGGCAACTTAAAAACAACTAAAAGCAGATCTATCAAAAGACCC  940

seq1  AACTAGACCACTCCATGGCACATGCCCAAGGAATCCAGGATTCAACTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGACCACTCCATGGCACATGCCCAAGGAATCCAGGATTCAACTACA  990

seq1  GGGAGACTTGCTTGGTCGTGTTCATTGCCACCATACTTATACTAGCTAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTTGCTTGGTCGTGTTCATTGCCACCATACTTATACTAGCTAGG  1040

seq1  AAATAAATACAGTCTCCATGTTGTTCAGCTGATGAATGGATAGTGAAACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATACAGTCTCCATGTTGTTCAGCTGATGAATGGATAGTGAAACA  1090

seq1  GAACATACGAGAATTC  1116
      ||||||||||||||||
seq2  GAACATACGAGAATTC  1106