BAC Information

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BAC

Clone NameB6Ng01-119D11
Chromosome8 (Build37)
Map Location 11,380,340 - 11,520,553
singlet/doubletdoublet
Overlap geneCol4a2, Rab20, 0710008K08Rik, Cars2
Upstream geneMyo16, LOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1
Downstream geneIng1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119D11.bB6Ng01-119D11.g
ACCDH923489DH923490
length1,094232
definitionDH923489|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D11, 5' end.DH923490|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,380,340 - 11,381,447)(11,520,322 - 11,520,553)
sequence
gaattcagaacctgaagccacgcccccagcagcctctggtgtaagtgacg
tcaggatgacttttctgtgagcgcagcccttacgactcaaacccacataa
cataaaacaacaatcctgctgaaatgcgttgggatggtgagggagtgagg
cttttagtattaggttttgattcttcggtgttcatctatattttctgctg
tccttcgagacaggccaaagcaaactcccattctaaagaaaaggctgtcc
tcttgcccgactcaagagccgcgctgtgcggctcctcggagagtgagtaa
cattggctgcccctctccagtggcagttacatgacagtgctgatgtccat
ttgggacccaactggcacagaaagtcccaggaagctgagcatgcgggaat
atgaatggtggggtggaaacttcctgaagagagatatgctaaggagacat
tgtgtccctccctatggctatcgggactattgggacaaagggcccaagga
acttgaagttgcgggtttcttctctgtgctggagaatgaacacggggatt
cctgtacactaaacatacgctcctgtacctaaacacacactctacactcc
cagccacagagcaagctgaggcagcccagtctcccattcagtctttagcc
aacaaccagcttcctgttgctgcttgcttcccaccaagccttagcacact
cggaggtgactcttttcccagtggctgaagcatcacctgctattgctggg
attggatgagatcccactaaagcattcaacacagaaacctaggtccatcc
acgcctcctggccacgcagcctcctggccaactcccacctcctctccggt
cctgccacttgctctcctagatttggttgtcagttaaaagctcattcaac
acaggtcaaaatgaaaccatggagtttaaaggcacacaggaatcgccaca
gcctgctagaaatgcacaggtaagagacaccagggagcaggagaaccctg
catgtcagtttacaaaaaccaaagtccctgtttcttccacaggtcagcac
atgtctcctagaaatagagctcaagtcactgctagagatgccag
ttaccatggcccaaggcggtcatggaacccaggattagggactggccaag
cggcctcctactgactctgggaagttgatgaaggtggaagagttgagggg
aggcagaccagaaacagctctcctcaacttgaggagtcacatcaaaggtt
tttttcactgtgcctgggagcccacggggagcccagagagacatcatcct
gtgcactcctgtggggggtgatgggtggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_11380340_11381447
seq2: B6Ng01-119D11.b_48_1141

seq1  GAATTCAGAACCTGAAGCCACGCCCCCAGCAGCCTCTGGTGTAAGTGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACCTGAAGCCACGCCCCCAGCAGCCTCTGGTGTAAGTGACG  50

seq1  TCAGGATGACTTTTCTGTGAGCGCAGCCCTTACGACTCAAACCCACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGACTTTTCTGTGAGCGCAGCCCTTACGACTCAAACCCACATAA  100

seq1  CATAAAACAACAATCCTGCTGAAATGCGTTGGGATGGTGAGGGAGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACAACAATCCTGCTGAAATGCGTTGGGATGGTGAGGGAGTGAGG  150

seq1  CTTTTAGTATTAGGTTTTGATTCTTCGGTGTTCATCTATATTTTCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGTATTAGGTTTTGATTCTTCGGTGTTCATCTATATTTTCTGCTG  200

seq1  TCCTTCGAGACAGGCCAAAGCAAACTCCCATTCTAAAGAAAAGGCTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGAGACAGGCCAAAGCAAACTCCCATTCTAAAGAAAAGGCTGTCC  250

seq1  TCTTGCCCGACTCAAGAGCCGCGCTGTGCGGCTCCTCGGAGAGTGAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCGACTCAAGAGCCGCGCTGTGCGGCTCCTCGGAGAGTGAGTAA  300

seq1  CATTGGCTGCCCCTCTCCAGTGGCAGTTACATGACAGTGCTGATGTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTGCCCCTCTCCAGTGGCAGTTACATGACAGTGCTGATGTCCAT  350

seq1  TTGGGACCCAACTGGCACAGAAAGTCCCAGGAAGCTGAGCATGCGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCCAACTGGCACAGAAAGTCCCAGGAAGCTGAGCATGCGGGAAT  400

seq1  ATGAATGGTGGGGTGGAAACTTCCTGAAGAGAGATATGCTAAGGAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGTGGGGTGGAAACTTCCTGAAGAGAGATATGCTAAGGAGACAT  450

seq1  TGTGTCCCTCCCTATGGCTATCGGGACTATTGGGACAAAGGGCCCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTCCCTATGGCTATCGGGACTATTGGGACAAAGGGCCCAAGGA  500

seq1  ACTTGAAGTTGCGGGTTTCTTCTCTGTGCTGGAGAATGAACACGGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGTTGCGGGTTTCTTCTCTGTGCTGGAGAATGAACACGGGGATT  550

seq1  CCTGTACACTAAACATACGCTCCTGTACCTAAACACACACTCTACACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACACTAAACATACGCTCCTGTACCTAAACACACACTCTACACTCC  600

seq1  CAGCCACAGAGCAAGCTGAGGCAGCCCAGTCTCCCATTCAGTCTTTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGAGCAAGCTGAGGCAGCCCAGTCTCCCATTCAGTCTTTAGCC  650

seq1  AACAACCAGCTTCCTGTTGCTGCTTGCTTCCCACCAAGCCTTAGCACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGCTTCCTGTTGCTGCTTGCTTCCCACCAAGCCTTAGCACACT  700

seq1  CGGAGGTGACTCTTTTCCCAGTGGCTGAAGCATCACCTGCTATTGCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGTGACTCTTTTCCCAGTGGCTGAAGCATCACCTGCTATTGCTGGG  750

seq1  ATTGGATGAGATCCCACTAAAGCATTCAACACAGAAACCTAGGTCCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGAGATCCCACTAAAGCATTCAACACAGAAACCTAGGTCCATCC  800

seq1  ACGCCTCCTGGCCACGCAGGCCTCCTGGCCAACTCCCACCTCCTCTCCGG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACGCCTCCTGGCCACGCA-GCCTCCTGGCCAACTCCCACCTCCTCTCCGG  849

seq1  TCCTGCCACTTGCTCTCCTAGATTTGGTTGTCAGTTAAAAGCTCATTCAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTGCCACTTGCTCTCCTAGATTTGGTTGTCAGTTAAAAGCTCATTC-A  898

seq1  ACACAGGTCAAAATGAAACCATGGAGTTTAAAGGCACACAGGGAATCGCC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACAGGTCAAAATGAAACCATGGAGTTTAAAGGCACACA-GGAATCGCC  947

seq1  ACAGCCTGCTAGAAATGCACAGGGAAAGAGACAACCAGGGAGCAGGAGAA  1000
      ||||||||||||||||||||| || ||||||| |||||||||||||||||
seq2  ACAGCCTGCTAGAAATGCACA-GGTAAGAGAC-ACCAGGGAGCAGGAGAA  995

seq1  CCCTGCAAGGTCAGTTTACAAAAAAACCAAAGCCCTTGTTTCCTCCACAG  1050
      |||||| | ||||||||||  ||||||||||| || |||||| |||||| 
seq2  CCCTGC-ATGTCAGTTTAC--AAAAACCAAAGTCCCTGTTTCTTCCACA-  1041

seq1  GGCCAGCACATGTCTCCTAGGAAATTAGAGCTCAAGTCACTGGCTAAGAG  1100
      || |||||||||||||||||  || |||||||||||||||| ||| ||| 
seq2  GGTCAGCACATGTCTCCTAG--AAATAGAGCTCAAGTCACT-GCT-AGA-  1086

seq1  GATGCCAG  1108
      ||||||||
seq2  GATGCCAG  1094

seq1: chr8_11520322_11520553
seq2: B6Ng01-119D11.g_75_306 (reverse)

seq1  CTCCCCACCCATCACCCCCCACAGGAGTGCACAGGATGATGTCTCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCATCACCCCCCACAGGAGTGCACAGGATGATGTCTCTCTGG  50

seq1  GCTCCCCGTGGGCTCCCAGGCACAGTGAAAAAAACCTTTGATGTGACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCGTGGGCTCCCAGGCACAGTGAAAAAAACCTTTGATGTGACTCC  100

seq1  TCAAGTTGAGGAGAGCTGTTTCTGGTCTGCCTCCCCTCAACTCTTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGAGGAGAGCTGTTTCTGGTCTGCCTCCCCTCAACTCTTCCACC  150

seq1  TTCATCAACTTCCCAGAGTCAGTAGGAGGCCGCTTGGCCAGTCCCTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAACTTCCCAGAGTCAGTAGGAGGCCGCTTGGCCAGTCCCTAATC  200

seq1  CTGGGTTCCATGACCGCCTTGGGCCATGGTAA  232
      ||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCATGACCGCCTTGGGCCATGGTAA  232