BAC Information

Click to search

BAC

Clone NameB6Ng01-119E02
Chromosome2 (Build37)8 (Build37)
Map Location 40,009,525 - 40,010,65422,171,586 - 22,172,093
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604
Downstream geneMagmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119E02.bB6Ng01-119E02.g
ACCDH923519DH923520
length1,1141,154
definitionDH923519|Mus musculus domesticus DNA, BAC clone: B6Ng01-119E02, 5' end.DH923520|Mus musculus domesticus DNA, BAC clone: B6Ng01-119E02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,009,525 - 40,010,654)(22,171,586 - 22,172,093)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
tttaggaaacaacagagttcaactttgctctttgtatggtaaatttactc
tagtttttaaatgcacctggcaggtaccatatactattcttttctatcat
tttttttttattactgaccaacatacttctctaagaatacaagttttgtt
tttactttccttgagtcacttaagttaacttaacataatgaatggttgaa
aattttttagaaataccaaactaaagaaatgactactagcatctgattta
ttagaatttccagagttttcaaacattgactcttttcattatatctgtca
tattattaaatgctattttcaacttagatttagagtctatggagtccttt
cacaaaaacataatttttagatgttcttaaagttctttcgttgttatggc
tgtttatttttagaatgaaatatgaacagaattacatattatgacatctt
atgaattgaatgaattctattgatttaatgtggtgtgtgtgcttgaatgt
atttaaatgtgtgtgtgtttgtgtatatataagtttgtgatctatgtgta
taagtacatgtgtatgggtccatctgggcaccagagttctctattgatct
ccaccttagtttttaaggcagggtcactgaaactcaagctgaccaattga
gtagaaaaagctcaggatatttgcatctctgctctgcacccccattactg
gcactattagaagcactacatccagcttttacatggatgtgtgatgagga
tctgaactcagattctcatgcttgcactgtaagcatgttattcactgact
gaatcatctcttcaccctgtaaaggcaatggattttcacagtatttcatt
acttcaaccaactgtatttacttcatgacaagtactaatgctgtacattc
taagtgagaatagacatttttacatttcattttcaaaattcatataaact
ttcatattcatatgactttagaatctgtagaagatcacaatactgtatta
acacaaatctccacctgtttttttctcctcagtacatattgaaaataatc
tgcaggaattattt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacagccctgagat
tccacctcacaccagtcagaatgactaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggaaatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccaaaacctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtcctcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaaggctgaagagtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgctcacagtcagctattgggatggatcacagggctccc
aatggaggagctagagaaagtagcaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgactaaccagtaccccgagctcttgactcta
gctgcatatgtatcaaagatgctagtcgcatccctgaaaaagatgcccat
tgacatgcactttaatgccagtaaggaacgcacagcccaaaaaagaaaat
aatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40009525_40010654
seq2: B6Ng01-119E02.b_43_1156

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTTAGGAAACAACAGAGTTCAACTTTGCTCTTTGTATGGTAAATTTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAACAACAGAGTTCAACTTTGCTCTTTGTATGGTAAATTTACTC  100

seq1  TAGTTTTTAAATGCACCTGGCAGGTACCATATACTATTCTTTTCTATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTAAATGCACCTGGCAGGTACCATATACTATTCTTTTCTATCAT  150

seq1  TTTTTTTTTATTACTGACCAACATACTTCTCTAAGAATACAAGTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTATTACTGACCAACATACTTCTCTAAGAATACAAGTTTTGTT  200

seq1  TTTACTTTCCTTGAGTCACTTAAGTTAACTTAACATAATGAATGGTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCCTTGAGTCACTTAAGTTAACTTAACATAATGAATGGTTGAA  250

seq1  AATTTTTTAGAAATACCAAACTAAAGAAATGACTACTAGCATCTGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAGAAATACCAAACTAAAGAAATGACTACTAGCATCTGATTTA  300

seq1  TTAGAATTTCCAGAGTTTTCAAACATTGACTCTTTTCATTATATCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTCCAGAGTTTTCAAACATTGACTCTTTTCATTATATCTGTCA  350

seq1  TATTATTAAATGCTATTTTCAACTTAGATTTAGAGTCTATGGAGTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAATGCTATTTTCAACTTAGATTTAGAGTCTATGGAGTCCTTT  400

seq1  CACAAAAACATAATTTTTAGATGTTCTTAAAGTTCTTTCGTTGTTATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAACATAATTTTTAGATGTTCTTAAAGTTCTTTCGTTGTTATGGC  450

seq1  TGTTTATTTTTAGAATGAAATATGAACAGAATTACATATTATGACATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTTTAGAATGAAATATGAACAGAATTACATATTATGACATCTT  500

seq1  ATGAATTGAATGAATTCTATTGATTTAATGTGGTGTGTGTGCTTGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGAATGAATTCTATTGATTTAATGTGGTGTGTGTGCTTGAATGT  550

seq1  ATTTAAATGTGTGTGTGTTTGTGTATATATAAGTTTGTGATCTATGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGTGTGTGTGTTTGTGTATATATAAGTTTGTGATCTATGTGTA  600

seq1  TAAGTACATGTGTATGGGTCCATCTGGGCACCAGAGTTCTCTATTGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATGTGTATGGGTCCATCTGGGCACCAGAGTTCTCTATTGATCT  650

seq1  CCACCTTAGTTTTTAAGGCAGGGTCACTGAAACTCAAGCTGACCAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTAGTTTTTAAGGCAGGGTCACTGAAACTCAAGCTGACCAATTGA  700

seq1  GTAGAAAAAGCTCAGGATATTTGCATCTCTGCTCTGCACCCCCATTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAAGCTCAGGATATTTGCATCTCTGCTCTGCACCCCCATTACTG  750

seq1  GCACTATTAGAAGCACTACATCCAGCTTTTACATGGATGTGTGATGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTAGAAGCACTACATCCAGCTTTTACATGGATGTGTGATGAGGA  800

seq1  TCTGAACTCAGATTCTCATGCTTGCACTGTAAGCATGTTATTCACTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCAGATTCTCATGCTTGCACTGTAAGCATGTTATTCACTGACT  850

seq1  GAATCATCTCTTCACCCTGTAAAGGCAATGGATTTTCACAGTATTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCTCTTCACCCTGTAAAGGCAATGGATTTTCACAGTATTTCATT  900

seq1  ACTTCAACCAACTGTATTTACTTCATGACAAGTACTAATGCTGTACATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAACCAACTGTATTTACTTCATGACAAGTACTAATGCTGTACATTC  950

seq1  TAAGTGAAGAATAGACATTTTTACATTTCATTTTCAAAATTCATATTAAA  1000
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAGTG-AGAATAGACATTTTTACATTTCATTTTCAAAATTCATA-TAAA  998

seq1  CTTTCATATTCATAATGACTTTAAGAAATCTGTAGAGAAATCACAAATTA  1050
      ||||||||||||| |||||||||   |||||||||| | |||||||  ||
seq2  CTTTCATATTCAT-ATGACTTTA--GAATCTGTAGA-AGATCACAA--TA  1042

seq1  CTTGTAATTAACACAAATCT-CACCTGTTTTTTTCTCTTCAAAGTACATT  1099
      | ||| |||||||||||||| |||||||||||||||| ||  |||||   
seq2  C-TGT-ATTAACACAAATCTCCACCTGTTTTTTTCTCCTC--AGTAC---  1085

seq1  AATTTTAAAAATAATCTGCAGGATATTATTT  1130
       || || |||||||||||||||| |||||||
seq2  -ATATTGAAAATAATCTGCAGGA-ATTATTT  1114

seq1: chr8_22171586_22172093
seq2: B6Ng01-119E02.g_819_1217 (reverse)

seq1  CATTATTTTCTTTTTTTAAAAGTTCATTTACATTTCTAATGCTATCCCAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAACCCCACACACTCCCCCACCCACTCACCCACTCATCCACTCCCACT  100
                                      || | ||   ||     |
seq2  --------------------------------CA-TTATTTTCT-----T  12

seq1  TCTTGGCCCTGT-CGTTCCCCTGAACTGAGGCATATAATGTTTGCAAAAC  149
      | ||||  |||| ||||||     |||  ||||| ||| |  ||| |   
seq2  TTTTGG-GCTGTGCGTTCC---TTACT--GGCAT-TAAAG--TGC-ATGT  52

seq1  CAACGGGCCTCTATTTCCACTGATGGCCGACTAGGCCATTTTCTGATTCA  199
      ||| |||| ||| ||| ||  ||||  |||||||  ||| || |||| ||
seq2  CAATGGGCATCT-TTTTCAGGGATG--CGACTAG--CATCTT-TGATACA  96

seq1  TATGCAGGTAGAGACACGAGCTCTGGGGGGGATACCAGTTAGTTCATATG  249
      ||||||| ||||| || ||||||     ||| |||  ||||| |||||  
seq2  TATGCAGCTAGAGTCAAGAGCTC-----GGGGTACTGGTTAG-TCATAAT  140

seq1  GTTGTTCCACCTATAGGATTGCAGATCCCTTTAGCTCCTTGTGTACTCTC  299
      ||||||||||||||||| |||||||||||||||||||||||  |||| ||
seq2  GTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTG-CTACTTTC  189

seq1  TCTAGCTCTTCCATTGGGGACCCTGTGACCCAT-CCAATAGCTAACTGTG  348
      |||||||| |||||||||  |||||||| |||| ||||||||| ||||||
seq2  TCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCCAATAGCTGACTGTG  239

seq1  AGCATCCACTTCTGTGTTTGCTAGGCCCCAGCATAGTCTCACAAGAGACA  398
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AGCATCCACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACA  289

seq1  GCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGT  448
      |||| ||||||||||||||   ||||||||||||||||||||||||||||
seq2  GCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGT  339

seq1  CAGCGTTTGGAAGCTGCTTATGGGATGGATCCCTGGATATGGCAGTCTTA  498
      |||||||||||||||| ||||||| |||||||||||||||||||||||  
seq2  CAGCGTTTGGAAGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCT  389

seq1  AGATGGTCCA  508
      ||||||||||
seq2  AGATGGTCCA  399