BAC Information

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BAC

Clone NameB6Ng01-119M06
Chromosome8 (Build37)
Map Location 13,309,698 - 13,461,485
singlet/doubletdoublet
Overlap geneTmco3, Tfdp1, Atp4b, Grk1, Gm687
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2
Downstream geneGas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119M06.bB6Ng01-119M06.g
ACCDH923891DH923892
length1,1711,126
definitionDH923891|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M06, 5' end.DH923892|Mus musculus domesticus DNA, BAC clone: B6Ng01-119M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,309,698 - 13,310,904)(13,460,350 - 13,461,485)
sequence
gaattcactgtatagaccaggctgggctggaacttccagagatttgcctg
cctcagctttctgagtgctgggattagcacgctaccacacctggcctttt
ttcctgtttttcctggcactagttatctgagttcaggtcttcatgcttgt
gagcaaatactctcacccactgagcacctccccagccccagtagaaaccc
tttatatccttgaaaactgatttacttcaaagcatagatccggaagaaac
ctgcatttgagttacatgacttgattttctaaattaatgtgatatatagg
tttcctttcagcatttaaaaataaaagacatgtatgatttgggtcattca
gtttgcaacatgttaaagaaaaatgttttgagattatttatggactctga
aggaatgcattaggggtgagatgacgcttgtctcttttctttcctagcgt
tgtcatggaagtattgcgcatactgtttctgattggacaaattctctttt
cgctagctgctgtctttcttttgtgtcttgtcatgaagacgtatctcata
ggaccgtattatcgaaagctgcacctggagagcaaggggaacaaagagat
cctcgtcctgggagtgtcagccttcaccttcctgatgctgacggtaaccc
tccagtgtctgctgtttgttcacagggcccctgtgcagcctcctcgaagc
cgatggttgcttctctagttgagaggtgcttgaggcatcacgcgagagtg
ctcacttattcagttaccctaccatggccgaacctacttggtcatccaag
tacttgtgaaaatatgatttgtgagtgtcgctgtttgaaacagaaacgag
tgttcatgaataggtacacccctgtcttaagctgcacgcagcttgctttc
aaatattggatcaagtttgaaaccactttacatgccttttggtgaggaca
agctagttaattgcatggcttctcatgccataaagaatgtctttaaacag
tatgtatttgaagagagcaaggggagtataggagaggtttacccggggag
gaggaatgattatttatctaaaatagagaaaacaacacgatttgtgtaag
gaagtggcatcatgagagaggggggaaagctggagacatatgtaatagtc
agtatggcaggtatccgcaca
gaattctctatgaggctggctgcagaagcgggctttctatatgcggcttt
attttgttgttatattttgggaaaaacccaaaccacattactttttagtc
tacgacctcctctgtgtcagggtgcgtaggggggtggcttctcccctggg
aggaagtaggctggtgtgcagggtgaaggagcatgggaacacccacggct
gggctggcactgggagggagactctgtgtcctcaggcagagagaggtcag
cagaggccgaggctggcggggcactggagggctgcaattaaacagagagg
cgtcctcgatcagcaggtggggggactcagctacgctgtccagcatatac
accagcaccaccttgacccagcagcttaccagaccaggaggcaccggctc
atcgggcctctcagaaggcctctccagtctagaacagccaagagacgtca
gatgtcagcctggacagcatctgattgacacagacctggcttctaaagct
gttggggacacaggaaggtctccaaactcctggcttggttggcctgctta
gcccagtcagctttcactagcactaactagaagatccagggacaactaca
gccaggacttgacactcactaaagacagcaagaccattaacattcccaac
acagcatggtgattattgtggtagcagccaaatgtggtcagccatagtct
agaagtttaaggaagttatttttcagatgtaattaatcagtgactttgag
taagctggtaccctactgtcaggcttctagtccaatcagttgcagacctt
aagaaaaaaggcagagaccctcaaggaaaaagaaactcttgcccaagtgt
gaccatgagttacagtcccaacagtacttccttgggtcctgaggtcagtg
taccattggactggagagatggctcagcagttaagagcactggctgctct
ccagggtcctgaattcaattcccagcaacacatggtgctcacaacatctg
taatgagatctgaaactttcttttctcatgcaggtgtacatgcaaggcag
aattgctgtataatgaaaataccgtaaaaacaattaaagacaaatctcct
tcacattgctggggtgtatctctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13309698_13310904
seq2: B6Ng01-119M06.b_46_1216

seq1  GAATTCACTGTATAGACCAGGCTGGGCTGGAACTTCCAGAGATTTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATAGACCAGGCTGGGCTGGAACTTCCAGAGATTTGCCTG  50

seq1  CCTCAGCTTTCTGAGTGCTGGGATTAGCACGCTACCACACCTGGCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTTCTGAGTGCTGGGATTAGCACGCTACCACACCTGGCCTTTT  100

seq1  TTCCTGTTTTTCCTGGCACTAGTTATCTGAGTTCAGGTCTTCATGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTTCCTGGCACTAGTTATCTGAGTTCAGGTCTTCATGCTTGT  150

seq1  GAGCAAATACTCTCACCCACTGAGCACCTCCCCAGCCCCAGTAGAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATACTCTCACCCACTGAGCACCTCCCCAGCCCCAGTAGAAACCC  200

seq1  TTTATATCCTTGAAAACTGATTTACTTCAAAGCATAGATCCGGAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCCTTGAAAACTGATTTACTTCAAAGCATAGATCCGGAAGAAAC  250

seq1  CTGCATTTGAGTTACATGACTTGATTTTCTAAATTAATGTGATATATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGAGTTACATGACTTGATTTTCTAAATTAATGTGATATATAGG  300

seq1  TTTCCTTTCAGCATTTAAAAATAAAAGACATGTATGATTTGGGTCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCAGCATTTAAAAATAAAAGACATGTATGATTTGGGTCATTCA  350

seq1  GTTTGCAACATGTTAAAGAAAAATGTTTTGAGATTATTTATGGACTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAACATGTTAAAGAAAAATGTTTTGAGATTATTTATGGACTCTGA  400

seq1  AGGAATGCATTAGGGGTGAGATGACGCTTGTCTCTTTTCTTTCCTAGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCATTAGGGGTGAGATGACGCTTGTCTCTTTTCTTTCCTAGCGT  450

seq1  TGTCATGGAAGTATTGCGCATACTGTTTCTGATTGGACAAATTCTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGAAGTATTGCGCATACTGTTTCTGATTGGACAAATTCTCTTTT  500

seq1  CGCTAGCTGCTGTCTTTCTTTTGTGTCTTGTCATGAAGACGTATCTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGCTGCTGTCTTTCTTTTGTGTCTTGTCATGAAGACGTATCTCATA  550

seq1  GGACCGTATTATCGAAAGCTGCACCTGGAGAGCAAGGGGAACAAAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGTATTATCGAAAGCTGCACCTGGAGAGCAAGGGGAACAAAGAGAT  600

seq1  CCTCGTCCTGGGAGTGTCAGCCTTCACCTTCCTGATGCTGACGGTAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCCTGGGAGTGTCAGCCTTCACCTTCCTGATGCTGACGGTAACCC  650

seq1  TCCAGTGTCTGCTGTTTGTTCACAGGGCCCCTGTGCAGCCTCCTCGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTCTGCTGTTTGTTCACAGGGCCCCTGTGCAGCCTCCTCGAAGC  700

seq1  CGATGGTTGCTTCTCTAGTTGAGAGGTGCTTGAGGCATCACGCGAGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTTGCTTCTCTAGTTGAGAGGTGCTTGAGGCATCACGCGAGAGTG  750

seq1  CTCACTTATTCAGTTACCCTACCATGGCCGAACCTACTTGGTCATCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTATTCAGTTACCCTACCATGGCCGAACCTACTTGGTCATCCAAG  800

seq1  TACTTGTGAAAATATGATTTGTGAGTGTCGCTGTTTGAAACAGAAACGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGAAAATATGATTTGTGAGTGTCGCTGTTTGAAACAGAAACGAG  850

seq1  TGTTCATGAATAGGTACACCCCTGTCTTAAGCTGCACGCAGCTTGCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGAATAGGTACACCCCTGTCTTAAGCTGCACGCAGCTTGCTTTC  900

seq1  AAAATATTGGATCAAGTTTGAAACCACTTTACATGCCTTTTGGTGAGGAC  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAATATTGGATCAAGTTTGAAACCACTTTACATGCCTTTTGGTGAGGAC  949

seq1  AAGCTAGTTAATTGCATGGCTTCTCATGCCATAAAGAAATGTCTTTAAAA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  AAGCTAGTTAATTGCATGGCTTCTCATGCCATAAAG-AATGTCTTTAAA-  997

seq1  CAAGTATGTATTTGAAAGAGAGCAAGGGGAAGGTATAGGAGAAGGTTTAC  1050
        |||||||||||| |||||||||||||||  ||||||||| ||||||||
seq2  -CAGTATGTATTTG-AAGAGAGCAAGGGGA--GTATAGGAG-AGGTTTAC  1042

seq1  ACGGGGGAAGGGAAGGGAAATGATATATTATCTAAAAAATAGAAGGAAAA  1100
       |||||  |||  |||  ||||||   |||||||||| | ||     |||
seq2  CCGGGG--AGG--AGG--AATGATTATTTATCTAAAATAGAG-----AAA  1081

seq1  ACAAAACAAACCAGATTTGTGTTAGGAAGTGGGCATCCCATGAGAGAGTG  1150
      |||| ||      ||||||||| ||||||| |||||  |||||||||| |
seq2  ACAACAC------GATTTGTGTAAGGAAGT-GGCAT--CATGAGAGAG-G  1121

seq1  GGGGAAAGGCCTGGAGACATAGTAAATAGTTCAGTAGTGGCAGTGGTATC  1200
      ||||||||  |||||||||||   ||||| |||||| |||||  ||||| 
seq2  GGGGAAAG--CTGGAGACATATGTAATAG-TCAGTA-TGGCA--GGTAT-  1164

seq1  CCGCACA  1207
      |||||||
seq2  CCGCACA  1171

seq1: chr8_13460350_13461485
seq2: B6Ng01-119M06.g_69_1194 (reverse)

seq1  GTCAGAGATACAACCCCAGCAAATGTGGAGAGAGATTTGTCTTT-ATTGT  49
      ||||||||||| |||||||| |||||| || ||||||||||||| |||||
seq2  GTCAGAGATAC-ACCCCAGC-AATGTGAAG-GAGATTTGTCTTTAATTGT  47

seq1  TTTTAAAGGTTTATTTATCATGTATACAGC-ATTCTGCC-TGCATGTACA  97
      |||||  |   ||||| |||| |||||||| |||||||| ||||||||||
seq2  TTTTACGG---TATTT-TCAT-TATACAGCAATTCTGCCTTGCATGTACA  92

seq1  CCTGCATGAGAAAAGAAGGTTTCAGATCTCATTACAGATGGTTGTGAGCC  147
      ||||||||||||||||| ||||||||||||||||||||| |||||||| |
seq2  CCTGCATGAGAAAAGAAAGTTTCAGATCTCATTACAGAT-GTTGTGAG-C  140

seq1  ACCATGTGGTTGCTGGGAATTGAATTCAGGACCCCTGGAAGAGCAGCCAG  197
      ||||||| ||||||||||||||||||||||| |||||| |||||||||||
seq2  ACCATGT-GTTGCTGGGAATTGAATTCAGGA-CCCTGG-AGAGCAGCCAG  187

seq1  TGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAATGGTACACTGACCTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAATGGTACACTGACCTCA  237

seq1  GGA-CCAAGGAAGTACTGTTGGGACTGTAACTCATGGTCACACTTGGGCA  296
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAAGGAAGTACTGTTGGGACTGTAACTCATGGTCACACTTGGGCA  287

seq1  AGAGTTTCTTTTTCCTTGAGGGTCTCTGCCTTTTTTCTTAAGGTCTGCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTTTTTCCTTGAGGGTCTCTGCCTTTTTTCTTAAGGTCTGCAA  337

seq1  CTGATTGGACTAGAAGCCCTGACAGTAGGGTACCAGCTTACTCAAAGTCA  396
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGATTGGACTAGAAG-CCTGACAGTAGGGTACCAGCTTACTCAAAGTCA  386

seq1  CTGATTAATTACATCTGAAAAATAACTTCCTTAAACTTCTAGACTATGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAATTACATCTGAAAAATAACTTCCTTAAACTTCTAGACTATGGC  436

seq1  TGACCACATTTGGCTGCTACCACAATAATCACCATGCTGTGTTGGGAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATTTGGCTGCTACCACAATAATCACCATGCTGTGTTGGGAATG  486

seq1  TTAATGGTCTTGCTGTCTTTAGTGAGTGTCAAGTCCTGGCTGTAGTTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTCTTGCTGTCTTTAGTGAGTGTCAAGTCCTGGCTGTAGTTGTC  536

seq1  CCTGGATCTTCTAGTTAGTGCTAGTGAAAGCTGACTGGGCTAAGCAGGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATCTTCTAGTTAGTGCTAGTGAAAGCTGACTGGGCTAAGCAGGCC  586

seq1  AACCAAGCCAGGAGTTTGGAGACCTTCCTGTGTCCCCAACAGCTTTAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCAGGAGTTTGGAGACCTTCCTGTGTCCCCAACAGCTTTAGAA  636

seq1  GCCAGGTCTGTGTCAATCAGATGCTGTCCAGGCTGACATCTGACGTCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCTGTGTCAATCAGATGCTGTCCAGGCTGACATCTGACGTCTCT  686

seq1  TGGCTGTTCTAGACTGGAGAGGCCTTCTGAGAGGCCCGATGAGCCGGTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTCTAGACTGGAGAGGCCTTCTGAGAGGCCCGATGAGCCGGTGC  736

seq1  CTCCTGGTCTGGTAAGCTGCTGGGTCAAGGTGGTGCTGGTGTATATGCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTCTGGTAAGCTGCTGGGTCAAGGTGGTGCTGGTGTATATGCTG  786

seq1  GACAGCGTAGCTGAGTCCCCCCACCTGCTGATCGAGGACGCCTCTCTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGTAGCTGAGTCCCCCCACCTGCTGATCGAGGACGCCTCTCTGTT  836

seq1  TAATTGCAGCCCTCCAGTGCCCCGCCAGCCTCGGCCTCTGCTGACCTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCAGCCCTCCAGTGCCCCGCCAGCCTCGGCCTCTGCTGACCTCTC  886

seq1  TCTGCCTGAGGACACAGAGTCTCCCTCCCAGTGCCAGCCCAGCCGTGGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGAGGACACAGAGTCTCCCTCCCAGTGCCAGCCCAGCCGTGGGT  936

seq1  GTTCCCATGCTCCTTCACCCTGCACACCAGCCTACTTCCTCCCAGGGGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCATGCTCCTTCACCCTGCACACCAGCCTACTTCCTCCCAGGGGAG  986

seq1  AAGCCACCCCCCTACGCACCCTGACACAGAGGAGGTCGTAGACTAAAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCCCCCTACGCACCCTGACACAGAGGAGGTCGTAGACTAAAAAG  1036

seq1  TAATGTGGTTTGGGTTTTTCCCAAAATATAACAACAAAATAAAGCCGCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGTTTGGGTTTTTCCCAAAATATAACAACAAAATAAAGCCGCAT  1086

seq1  ATAGAAAGCCCGCTTCTGCAGCCAGCCTCATAGAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCCCGCTTCTGCAGCCAGCCTCATAGAGAATTC  1126