BAC Information

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BAC

Clone NameB6Ng01-119P14
Chromosome8 (Build37)
Map Location 13,309,698 - 13,461,485
singlet/doubletdoublet
Overlap geneTmco3, Tfdp1, Atp4b, Grk1, Gm687
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2
Downstream geneGas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119P14.bB6Ng01-119P14.g
ACCDH924044DH924045
length1,1861,125
definitionDH924044|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P14, 5' end.DH924045|Mus musculus domesticus DNA, BAC clone: B6Ng01-119P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,309,698 - 13,310,932)(13,460,346 - 13,461,485)
sequence
gaattcactgtatagaccaggctgggctggaacttccagagatttgcctg
cctcagctttctgagtgctgggattagcacgctaccacacctggcctttt
ttcctgtttttcctggcactagttatctgagttcaggtcttcatgcttgt
gagcaaatactctcacccactgagcacctccccagccccagtagaaaccc
tttatatccttgaaaactgatttacttcaaagcatagatccggaagaaac
ctgcatttgagttacatgacttgattttctaaattaatgtgatatatagg
tttcctttcagcatttaaaaataaaagacatgtatgatttgggtcattca
gtttgcaacatgttaaagaaaaatgttttgagattatttatggactctga
aggaatgcattaggggtgagatgacgcttgtctcttttctttcctagcgt
tgtcatggaagtattgcgcatactgtttctgattggacaaattctctttt
cgctagctgctgtctttcttttgtgtcttgtcatgaagacgtatctcata
ggaccgtattatcgaaagctgcacctggagagcaaggggaacaaagagat
cctcgtcctgggagtgtcagccttcaccttcctgatgctgacggtaaccc
tccagtgtctgctgtttgttcacagggcccctgtgcagcctcctcgaagc
cgatggttgcttctctagttgagaggtgcttgaggcatcacgcgagagtg
ctcacttattcagttaccctaccatggccgaacctacttggtcatccaag
tacttgtgaaaatatgatttgtgagtgtcgctgtttgaaacagaaacgag
tgttcatgaataggtacacccctgtcttaagctgcacgcagcttgctttc
aaatattggatcaagtttgaaaccactttacatgcctttggtgaggacag
ctagttattgcatggcttctcatgccataaagaatgtcttaacagtatgt
atttgaaagagagcaggggagtatagagatgttacaccggggagggaggg
aatgattattatctaaaatgagaaacaacaaactgattggtgttaggatg
gcattcatgagagaggtggggaggcttgtacatagtaatgtccaattgta
agtatccgcacatgcagtacctgtcggcagctgtgc
gaattctctatgaggctggctgcagaagcgggctttctatatgcggcttt
attttgttgttatattttgggaaaaacccaaaccacattactttttagtc
tacgacctcctctgtgtcagggtgcgtaggggggtggcttctcccctggg
aggaagtaggctggtgtgcagggtgaaggagcatgggaacacccacggct
gggctggcactgggagggagactctgtgtcctcaggcagagagaggtcag
cagaggccgaggctggcggggcactggagggctgcaattaaacagagagg
cgtcctcgatcagcaggtggggggactcagctacgctgtccagcatatac
accagcaccaccttgacccagcagcttaccagaccaggaggcaccggctc
atcgggcctctcagaaggcctctccagtctagaacagccaagagacgtca
gatgtcagcctggacagcatctgattgacacagacctggcttctaaagct
gttggggacacaggaaggtctccaaactcctggcttggttggcctgctta
gcccagtcagctttcactagcactaactagaagatccagggacaactaca
gccaggacttgacactcactaaagacagcaagaccattaacattcccaac
acagcatggtgattattgtggtagcagccaaatgtggtcagccatagtct
agaagtttaaggaagttatttttcagatgtaattaatcagtgactttgag
taagctggtaccctactgtcagggcttctagtccaatcagttgcagacct
taagaaaaaaggcagagaccctcaaggaaaagaaactcttgcccaagtgt
gaccatgagttacagtcccaacagtacttccttgggtcctgaggtcagtg
taccattggactggagagatggctcagcagttaagagcactggctgctct
ttcaggggtctgaattcaattcccagcaacacatgtgctcacaacatctg
tatgagatctgaaactttctttttctcatgcagtgtacatgcaagcagat
gctgaatactgataaataacttaaaaaacaataagaacatctctcctcat
tgcttgggctgtatctctgacatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13309698_13310932
seq2: B6Ng01-119P14.b_50_1235

seq1  GAATTCACTGTATAGACCAGGCTGGGCTGGAACTTCCAGAGATTTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATAGACCAGGCTGGGCTGGAACTTCCAGAGATTTGCCTG  50

seq1  CCTCAGCTTTCTGAGTGCTGGGATTAGCACGCTACCACACCTGGCCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTTCTGAGTGCTGGGATTAGCACGCTACCACACCTGGCCTTTT  100

seq1  TTCCTGTTTTTCCTGGCACTAGTTATCTGAGTTCAGGTCTTCATGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTTCCTGGCACTAGTTATCTGAGTTCAGGTCTTCATGCTTGT  150

seq1  GAGCAAATACTCTCACCCACTGAGCACCTCCCCAGCCCCAGTAGAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATACTCTCACCCACTGAGCACCTCCCCAGCCCCAGTAGAAACCC  200

seq1  TTTATATCCTTGAAAACTGATTTACTTCAAAGCATAGATCCGGAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCCTTGAAAACTGATTTACTTCAAAGCATAGATCCGGAAGAAAC  250

seq1  CTGCATTTGAGTTACATGACTTGATTTTCTAAATTAATGTGATATATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTGAGTTACATGACTTGATTTTCTAAATTAATGTGATATATAGG  300

seq1  TTTCCTTTCAGCATTTAAAAATAAAAGACATGTATGATTTGGGTCATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCAGCATTTAAAAATAAAAGACATGTATGATTTGGGTCATTCA  350

seq1  GTTTGCAACATGTTAAAGAAAAATGTTTTGAGATTATTTATGGACTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAACATGTTAAAGAAAAATGTTTTGAGATTATTTATGGACTCTGA  400

seq1  AGGAATGCATTAGGGGTGAGATGACGCTTGTCTCTTTTCTTTCCTAGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCATTAGGGGTGAGATGACGCTTGTCTCTTTTCTTTCCTAGCGT  450

seq1  TGTCATGGAAGTATTGCGCATACTGTTTCTGATTGGACAAATTCTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGAAGTATTGCGCATACTGTTTCTGATTGGACAAATTCTCTTTT  500

seq1  CGCTAGCTGCTGTCTTTCTTTTGTGTCTTGTCATGAAGACGTATCTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGCTGCTGTCTTTCTTTTGTGTCTTGTCATGAAGACGTATCTCATA  550

seq1  GGACCGTATTATCGAAAGCTGCACCTGGAGAGCAAGGGGAACAAAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGTATTATCGAAAGCTGCACCTGGAGAGCAAGGGGAACAAAGAGAT  600

seq1  CCTCGTCCTGGGAGTGTCAGCCTTCACCTTCCTGATGCTGACGGTAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCCTGGGAGTGTCAGCCTTCACCTTCCTGATGCTGACGGTAACCC  650

seq1  TCCAGTGTCTGCTGTTTGTTCACAGGGCCCCTGTGCAGCCTCCTCGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTCTGCTGTTTGTTCACAGGGCCCCTGTGCAGCCTCCTCGAAGC  700

seq1  CGATGGTTGCTTCTCTAGTTGAGAGGTGCTTGAGGCATCACGCGAGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTTGCTTCTCTAGTTGAGAGGTGCTTGAGGCATCACGCGAGAGTG  750

seq1  CTCACTTATTCAGTTACCCTACCATGGCCGAACCTACTTGGTCATCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTATTCAGTTACCCTACCATGGCCGAACCTACTTGGTCATCCAAG  800

seq1  TACTTGTGAAAATATGATTTGTGAGTGTCGCTGTTTGAAACAGAAACGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTGAAAATATGATTTGTGAGTGTCGCTGTTTGAAACAGAAACGAG  850

seq1  TGTTCATGAATAGGTACACCCCTGTCTTAAGCTGCACGCAGCTTGCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGAATAGGTACACCCCTGTCTTAAGCTGCACGCAGCTTGCTTTC  900

seq1  AAAATATTGGATCAAGTTTGAAACCACTTTACATGCCTTTTGGTGAGGAC  950
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  -AAATATTGGATCAAGTTTGAAACCACTTTACATGCC-TTTGGTGAGGAC  948

seq1  AAGCTAGTTAATTGCATGGCTTCTCATGCCATAAAGAAATGTCTTTAAAA  1000
       |||||||| |||||||||||||||||||||||||| ||||||||   ||
seq2  -AGCTAGTT-ATTGCATGGCTTCTCATGCCATAAAG-AATGTCTT---AA  992

seq1  CAAGTATGTATTTGAAAGAGAGCAAGGGGAAGGTATAGGAGAAGGTTTAC  1050
      | ||||||||||||||||||||| ||||||  ||||| |||| |  ||||
seq2  C-AGTATGTATTTGAAAGAGAGC-AGGGGA--GTATA-GAGATG--TTAC  1035

seq1  ACGGGGGAAGGGAAGGGAAATGATATATTATCTAAAAAATAGAAGGAAAA  1100
      || |||| |||||  || |||||| ||||||||||       || || ||
seq2  ACCGGGG-AGGGA--GGGAATGAT-TATTATCTAA-------AATGAGAA  1074

seq1  ACAAAACAAACCAGATTTGTGTTAGGAAGTGGGCATCCCATGAGAGAGTG  1150
      ||  |||||| | |||| |||||||||    |||||  ||||||||||  
seq2  AC--AACAAA-CTGATTGGTGTTAGGA---TGGCAT-TCATGAGAGAGGT  1117

seq1  GGGGAAAGGCCTGGAGACATAGTAAATAGTTCAGTAGTGGCAGTGGTATC  1200
      ||||  |||| ||   |||||||||   || || | ||       |||| 
seq2  GGGG--AGGCTTG--TACATAGTAA--TGTCCAATTGT-----AAGTAT-  1155

seq1  CCGCACACATTGACTGTA-CTGTCCGGCAGCTGTGC  1235
      |||||||   || | ||| |||| ||||||||||||
seq2  CCGCACA---TG-CAGTACCTGT-CGGCAGCTGTGC  1186

seq1: chr8_13460346_13461485
seq2: B6Ng01-119P14.g_70_1194 (reverse)

seq1  GGATGTCAGAGATACAACCCCAGCAAATGTGGAGAGAGATTTGTCTTTAT  50
      |||||||||||||||| ||| ||| |||| |||||||    |||  ||||
seq2  GGATGTCAGAGATACAGCCCAAGC-AATGAGGAGAGA----TGTTCTTAT  45

seq1  TGTTTTTAAAGGTTTATTTATCATGTATACAGCATTCTGCCTGCATGTAC  100
      ||||||| |||  |||||||||| |||| ||||| ||||| |||||||||
seq2  TGTTTTTTAAG--TTATTTATCA-GTATTCAGCA-TCTGCTTGCATGTAC  91

seq1  ACCTGCATGAG-AAAAGAAGGTTTCAGATCTCATTACAGATGGTTGTGAG  149
      | ||||||||| ||||||| ||||||||||||| ||||||| ||||||||
seq2  A-CTGCATGAGAAAAAGAAAGTTTCAGATCTCA-TACAGAT-GTTGTGAG  138

seq1  CCACCATGTGGTTGCTGGGAATTGAATTCAGGACCCCTGGAAGAGCAGCC  199
      |   ||||| |||||||||||||||||||| |||||||| ||||||||||
seq2  C--ACATGT-GTTGCTGGGAATTGAATTCA-GACCCCTGAAAGAGCAGCC  184

seq1  AGTGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAATGGTACACTGACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAATGGTACACTGACCT  234

seq1  CAGGA-CCAAGGAAGTACTGTTGGGACTGTAACTCATGGTCACACTTGGG  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCAAGGAAGTACTGTTGGGACTGTAACTCATGGTCACACTTGGG  284

seq1  CAAGAGTTTCTTTTTCCTTGAGGGTCTCTGCCTTTTTTCTTAAGGTCTGC  348
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTTTC-TTTTCCTTGAGGGTCTCTGCCTTTTTTCTTAAGGTCTGC  333

seq1  AACTGATTGGACTAGAAGCCCTGACAGTAGGGTACCAGCTTACTCAAAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTGGACTAGAAGCCCTGACAGTAGGGTACCAGCTTACTCAAAGT  383

seq1  CACTGATTAATTACATCTGAAAAATAACTTCCTTAAACTTCTAGACTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTAATTACATCTGAAAAATAACTTCCTTAAACTTCTAGACTATG  433

seq1  GCTGACCACATTTGGCTGCTACCACAATAATCACCATGCTGTGTTGGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCACATTTGGCTGCTACCACAATAATCACCATGCTGTGTTGGGAA  483

seq1  TGTTAATGGTCTTGCTGTCTTTAGTGAGTGTCAAGTCCTGGCTGTAGTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGGTCTTGCTGTCTTTAGTGAGTGTCAAGTCCTGGCTGTAGTTG  533

seq1  TCCCTGGATCTTCTAGTTAGTGCTAGTGAAAGCTGACTGGGCTAAGCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGATCTTCTAGTTAGTGCTAGTGAAAGCTGACTGGGCTAAGCAGG  583

seq1  CCAACCAAGCCAGGAGTTTGGAGACCTTCCTGTGTCCCCAACAGCTTTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAGCCAGGAGTTTGGAGACCTTCCTGTGTCCCCAACAGCTTTAG  633

seq1  AAGCCAGGTCTGTGTCAATCAGATGCTGTCCAGGCTGACATCTGACGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTCTGTGTCAATCAGATGCTGTCCAGGCTGACATCTGACGTCT  683

seq1  CTTGGCTGTTCTAGACTGGAGAGGCCTTCTGAGAGGCCCGATGAGCCGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTTCTAGACTGGAGAGGCCTTCTGAGAGGCCCGATGAGCCGGT  733

seq1  GCCTCCTGGTCTGGTAAGCTGCTGGGTCAAGGTGGTGCTGGTGTATATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGGTCTGGTAAGCTGCTGGGTCAAGGTGGTGCTGGTGTATATGC  783

seq1  TGGACAGCGTAGCTGAGTCCCCCCACCTGCTGATCGAGGACGCCTCTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCGTAGCTGAGTCCCCCCACCTGCTGATCGAGGACGCCTCTCTG  833

seq1  TTTAATTGCAGCCCTCCAGTGCCCCGCCAGCCTCGGCCTCTGCTGACCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGCAGCCCTCCAGTGCCCCGCCAGCCTCGGCCTCTGCTGACCTC  883

seq1  TCTCTGCCTGAGGACACAGAGTCTCCCTCCCAGTGCCAGCCCAGCCGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTGAGGACACAGAGTCTCCCTCCCAGTGCCAGCCCAGCCGTGG  933

seq1  GTGTTCCCATGCTCCTTCACCCTGCACACCAGCCTACTTCCTCCCAGGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCATGCTCCTTCACCCTGCACACCAGCCTACTTCCTCCCAGGGG  983

seq1  AGAAGCCACCCCCCTACGCACCCTGACACAGAGGAGGTCGTAGACTAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACCCCCCTACGCACCCTGACACAGAGGAGGTCGTAGACTAAAA  1033

seq1  AGTAATGTGGTTTGGGTTTTTCCCAAAATATAACAACAAAATAAAGCCGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTGGTTTGGGTTTTTCCCAAAATATAACAACAAAATAAAGCCGC  1083

seq1  ATATAGAAAGCCCGCTTCTGCAGCCAGCCTCATAGAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAAGCCCGCTTCTGCAGCCAGCCTCATAGAGAATTC  1125