BAC Information

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BAC

Clone NameB6Ng01-120B21
Chromosome8 (Build37)
Map Location 112,477,961 - 112,479,084
singlet/doubletsinglet
Overlap geneMarveld3
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl
Downstream geneLOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B21.bB6Ng01-120B21.g
ACCDH924145DH924146
length6841,137
definitionDH924145|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B21, 5' end.DH924146|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcatagcgacacactagacacactattggcttatttaaacatt
aacagaaagattacatgtcagcaaaagggcatcaggactttgttcctgtg
ggctgggggcttatctttgttcacatagcaatcagttgatgtatgacttt
acccagcgtcaaggggcagtagacagaggggaggttccggccaggtggtg
ttgacccagacaagatagccctgcttgtacaatcaagctgttcttaggaa
tgtcttaacaacagccctgtctgttctgctttgttctcggccccaggccg
tggctcatagacaactcttttacatgaatcacaagttacaaaatctcatt
ttccttcagggcccaggggaagggggggaagagacccacgccccaccaga
gttccctatcctctggtcagtcaggcgtgggagggctgctatctacctat
ccactcatccctgggtgggcattcctctatcccactcttcagggggtggc
caaggggcagccctgcctggggaccctagagctactttgctaaagccccg
gggttataggagagagggatgagggaacaggttcccaacacctgtgagag
tccacacagccttgatgagcagagactctctatggtttaagaactttatt
atagaaaggcagggagagagagagagagagagag
gaattcttatgaatgattgtggtttaaaagtgatgtctatcacgtataag
tggcagaacattctagaggtctaaaactcaagcatttctgtgggcttctc
cttcagcttcttgacttttcggtaacccctaaaggccaggacagctccca
cggcaaagaccccaatggccatggctgcaaagactcctgctcctatgtct
cccccatggacaccacagttgaagccactataacctttgctctggtacag
ggtctccctctccttgcacacatctgaactataggcggcagagaggtgtt
ggaagaagaagtacaagcctggaacataggccccagcaatgagtgcatcc
attaagccctcaatcaccagccatagtggacagtgccaagggacccgcaa
ggcacccgcgaggagggtgagacaggagaaggtcatgagggctccgctgt
aggccatggctgcagtgaccgtaggcagcttgagctggtaaaactgaacg
tccaactgctgggctctctccccgtccgcaccgtcaaagccactataagc
ccctccatactggtagtagtaaatcccccccaggctggtgatgcccgtgt
agccccccgtggaattgtaagagacagagctgcaggccaagatcagcaag
ttcagcagagcctccagcatctggcagcaggctgcaagaaaagggcgtta
ctgtttggagatgctgcggttgctaggagacgctttcagctcaaggttca
tccttcccagggagctctcagcccactgctttcctttctctgccccagtg
ggcagtgaaggggctgcccagttaatgttagatggcagcggggacctgtg
ctttcttcaatccttttgatggaaaagcatacgttcaaataagccaagtg
gggatggctgccagtaaagtgttcactttgtaagcacagagccagttccc
agccccccacattaaaataacaggcatggtggcacactattgctatcctt
agtacatgggagccagagccaggaaggtcaaggagttcttgcctagcctc
caactacatagtaaaccttgagagatttgcctggactatacagaagcccc
cctcctctctagaatacacaaatattttttcctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112477961_112479084
seq2: B6Ng01-120B21.g_69_1205

seq1  GAATTCTTATGAATGATTGTGGTTTAAAAGTGATGTCTATCACGTATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGAATGATTGTGGTTTAAAAGTGATGTCTATCACGTATAAG  50

seq1  TGGCAGAACATTCTAGAGGTCTAAAACTCAAGCATTTCTGTGGGCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAACATTCTAGAGGTCTAAAACTCAAGCATTTCTGTGGGCTTCTC  100

seq1  CTTCAGCTTCTTGACTTTTCGGTAACCCCTAAAGGCCAGGACAGCTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTCTTGACTTTTCGGTAACCCCTAAAGGCCAGGACAGCTCCCA  150

seq1  CGGCAAAGACCCCAATGGCCATGGCTGCAAAGACTCCTGCTCCTATGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAAGACCCCAATGGCCATGGCTGCAAAGACTCCTGCTCCTATGTCT  200

seq1  CCCCCATGGACACCACAGTTGAAGCCACTATAACCTTTGCTCTGGTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGGACACCACAGTTGAAGCCACTATAACCTTTGCTCTGGTACAG  250

seq1  GGTCTCCCTCTCCTTGCACACATCTGAACTATAGGCGGCAGAGAGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCTCTCCTTGCACACATCTGAACTATAGGCGGCAGAGAGGTGTT  300

seq1  GGAAGAAGAAGTACAAGCCTGGAACATAGGCCCCAGCAATGAGTGCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAAGTACAAGCCTGGAACATAGGCCCCAGCAATGAGTGCATCC  350

seq1  ATTAAGCCCTCAATCACCAGCCATAGTGGACAGTGCCAAGGGACCCGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCCCTCAATCACCAGCCATAGTGGACAGTGCCAAGGGACCCGCAA  400

seq1  GGCACCCGCGAGGAGGGTGAGACAGGAGAAGGTCATGAGGGCTCCGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCGCGAGGAGGGTGAGACAGGAGAAGGTCATGAGGGCTCCGCTGT  450

seq1  AGGCCATGGCTGCAGTGACCGTAGGCAGCTTGAGCTGGTAAAACTGAACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATGGCTGCAGTGACCGTAGGCAGCTTGAGCTGGTAAAACTGAACG  500

seq1  TCCAACTGCTGGGCTCTCTCCCCGTCCGCACCGTCAAAGCCACTATAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCTGGGCTCTCTCCCCGTCCGCACCGTCAAAGCCACTATAAGC  550

seq1  CCCTCCATACTGGTAGTAGTAAATCCCCCCCAGGCTGGTGATGCCCGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATACTGGTAGTAGTAAATCCCCCCCAGGCTGGTGATGCCCGTGT  600

seq1  AGCCCCCCGTGGAATTGTAAGAGACAGAGCTGCAGGCCAAGATCAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCCGTGGAATTGTAAGAGACAGAGCTGCAGGCCAAGATCAGCAAG  650

seq1  TTCAGCAGAGCCTCCAGCATCTGGCAGCAGGCTGCAAGAAAAGGGCGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGAGCCTCCAGCATCTGGCAGCAGGCTGCAAGAAAAGGGCGTTA  700

seq1  CTGTTTGGAGATGCTGCGGTTGCTAGGAGACGCTTTCAGCTCAAGGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGAGATGCTGCGGTTGCTAGGAGACGCTTTCAGCTCAAGGTTCA  750

seq1  TCCTTCCCAGGGAGCTCTCAGCCCACTGC-TTCCTTTCTCTGCCCCAGTG  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCTTCCCAGGGAGCTCTCAGCCCACTGCTTTCCTTTCTCTGCCCCAGTG  800

seq1  GGCAGTGAAGGGGCTGCCCAGTTAATGTTAGATGGCAGCGGGGACCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAAGGGGCTGCCCAGTTAATGTTAGATGGCAGCGGGGACCTGTG  850

seq1  CTTTCTTCAAATCCTTTTGATGGAAAAGCATACGTTCAAATAAGCCAAGT  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTC-AATCCTTTTGATGGAAAAGCATACGTTCAAATAAGCCAAGT  899

seq1  GGGGATGGCTGCCAGTAAAGTGTTCACTTTGTAAGCACAAGAGCCAGTTC  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGGATGGCTGCCAGTAAAGTGTTCACTTTGTAAGCAC-AGAGCCAGTTC  948

seq1  CCAG-CACCCACA-TAAAATAACAGGCATGGTGGCACACTATTGCTATCC  997
      |||| | |||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCCCACATTAAAATAACAGGCATGGTGGCACACTATTGCTATCC  998

seq1  -TAGTACATGGGAGGCAGAGGCAGGAAGGTC-AGGAGTTCTTGGCTAGCC  1045
       ||||||||||||| ||||| |||||||||| ||||||||||| ||||||
seq2  TTAGTACATGGGAGCCAGAGCCAGGAAGGTCAAGGAGTTCTTGCCTAGCC  1048

seq1  T-CAACTACATAGTAAACTT---GAGATTAGCCTGGACTATAC-GAGAGC  1090
      | |||||||||||||||| |   |||||| ||||||||||||| ||   |
seq2  TCCAACTACATAGTAAACCTTGAGAGATTTGCCTGGACTATACAGAAGCC  1098

seq1  CCCCTCCTCTATAG-ATACAC--ATATTTTTT--TTTCT  1124
      |||||||||| ||| ||||||  |||||||||  |||||
seq2  CCCCTCCTCTCTAGAATACACAAATATTTTTTCCTTTCT  1137