BAC Information

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BAC

Clone NameB6Ng01-120C12
Chromosome8 (Build37)
Map Location 72,186,409 - 72,187,589
singlet/doubletsinglet
Overlap geneEG636741
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175
Downstream gene1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120C12.bB6Ng01-120C12.g
ACCDH924173DH924174
length1,2261,135
definitionDH924173|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C12, 5' end.DH924174|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatgttactttaaacatattctctaaaacatctttgttagaa
tcaaccaacaaaatatcattcataaatgataaatgatagatcaaggaatt
gcttacaaaattatttctaatggttgttgtacaaaatactaatataaagt
tggactatttaacatttcctgtggaagtaccttccagtggcatctctata
gtggatggctatggttcagattaggtactgagaaagcaaacctttcccta
cctttctcatgcaagagaactgagaaaaagaaacaatatttcaaattaat
tattattataggccatgattttggtaacaaagaagataaaggaagtccag
ctagtaaaggacccattggttgaattaccttattaattgctcttaaattc
attatcatcctctcttacacgcgttctcgcgaccggccaggaagaacgca
gcaaaccagaatcttctgcggcaaaactttattgcttacatctttaggag
ccagagcgcaagagagcaagagagatggcaagagcacaagagctttattg
cttacatcttcaggagcaagaagcaagagccagagcaagagagcaagagc
tctattgcttacatctttaggagccagagtgcaagagcgctagagtgcaa
gagccagagcaagagcaaaagcaagagcgcaagagcgcaagagctttatt
gcttacatcttcaggagcaagaagcaagagccagagcaagagagcaagag
agcaagagagcaagagagcaagagagcaaatgacgaaaccccgtcccttt
ttaaggagaattattctccgcctaggacgtattactccctgattggctgc
agcccatcggccgagttgtcgtcacggggaaggcagagcacatggggtgg
aaaactacccttggcacatgcgcagattattgttaccacttagaacacag
gatgtcagcgccatctgcaacggcgaatgtgagggcggctcccacagatc
ctccatttcctgatttcatttacacaaacatggagaattccatgggctgt
agactttctatatgtgactcactgctctgtacagtgtcagtgctgcattt
ttcttttgttgggcctgctctacaaagtcagaattaatagtacttaggcc
aggctgtgtactttcaatggctcttaattgtactaattctgctgcgagtg
tcctgcatgtgggataagaagaggcc
gaattctgttgctcttcagtggtaaccatgacagaagtctttataggaat
tttgatgtgctgtgagattttacaaagaaccaaactaagccaataagcac
tgtgtgaattttttcactagaacatcttttaccaaagcaacaggaattgg
tgctaaaatgtaagcatgctgatgagtgttaccagagcatttcacttggg
aatattctagacacttgaactgatgaatatcacttttttgatacaagctc
tatgagagtcagcatataggacatcagtccatttagcttatgaccactcc
aatcttgcaaaagatataaacttggtctgagttttagaactctgtgtaac
ctagacctaataaaaagtcagtagtaaaacaactattactaaattgctca
ttttttttgttatgatttatgtttcctttacagaagttacatgtttcaga
ccttctgtgagaatgaaggtgatgatcaaggtggagaaaatttgccttgg
aaaccaaatctcagtatgaacatgagatgttccactgggttaaccccatg
ggatcacagtatgtggggaaaggcttccccaagctactcatcctctaggc
ataccacacctcactctcagtgtaccgcacacgagcaggagaaatatgtg
accaagcagtataactctgattctctgagaacctttcagcggtacatgag
aactcacgttgtgaatgggccatgtgaatgtgaagtatgcttaaagtact
ttggctttccaggtacattggaaatacaccaggagactcagagtgaaaac
aatccctatcaatacaaggaatatggaaagacctctgtggatattagttc
actatgcacacatggaggagcgcagctgtaggaaaaggttatgagtgtaa
ccaatgtgggaaagctctgagctcttacagttcacttcgagacatgaaag
atcatactgagaaaacgtacagtgcaacagtgcggaaagctttcgataca
cagttatctcattacatgaagatcacactgtgaaaccctatgatgtaacg
aggtggaagcataaattctggtgctgcagtaatgaaaatcatctggaaaa
cgtcatgatgtaaacctgtgtaggcctgacgacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_72186409_72187589
seq2: B6Ng01-120C12.g_69_1203

seq1  GAATTCTGTTGCTCTTCAGTGGTAACCATGACAGAAGTCTTTATAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGCTCTTCAGTGGTAACCATGACAGAAGTCTTTATAGGAAT  50

seq1  TTTGATGTGCTGTGAGATTTTACAAAGAACCAAACTAAGCCAATAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGCTGTGAGATTTTACAAAGAACCAAACTAAGCCAATAAGCAC  100

seq1  TGTGTGAATTTTTTCACTAGAACATCTTTTACCAAAGCAACAGGAATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATTTTTTCACTAGAACATCTTTTACCAAAGCAACAGGAATTGG  150

seq1  TGCTAAAATGTAAGCATGCTGATGAGTGTTACCAGAGCATTTCACTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATGTAAGCATGCTGATGAGTGTTACCAGAGCATTTCACTTGGG  200

seq1  AATATTCTAGACACTTGAACTGATGAATATCACTTTTTTGATACAAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTAGACACTTGAACTGATGAATATCACTTTTTTGATACAAGCTC  250

seq1  TATGAGAGTCAGCATATAGGACATCAGTCCATTTAGCTTATGACCACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGTCAGCATATAGGACATCAGTCCATTTAGCTTATGACCACTCC  300

seq1  AATCTTGCAAAAGATATAAACTTGGTCTGAGTTTTAGAACTCTGTGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCAAAAGATATAAACTTGGTCTGAGTTTTAGAACTCTGTGTAAC  350

seq1  CTAGACCTAATAAAAAGTCAGTAGTAAAACAACTATTACTAAATTGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTAATAAAAAGTCAGTAGTAAAACAACTATTACTAAATTGCTCA  400

seq1  TTTTTTTTGTTATGATTTATGTTTCCTTTACAGAAGTTACATGTTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTATGATTTATGTTTCCTTTACAGAAGTTACATGTTTCAGA  450

seq1  CCTTCTGTGAGAATGAAGGTGATGATCAAGGTGGAGAAAATTTGCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTGAGAATGAAGGTGATGATCAAGGTGGAGAAAATTTGCCTTGG  500

seq1  AAACCAAATCTCAGTATGAACATGAGATGTTCCACTGGGTTAACCCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAATCTCAGTATGAACATGAGATGTTCCACTGGGTTAACCCCATG  550

seq1  GGATCACAGTATGTGGGGAAAGGCTTCCCCAAGCTACTCATCCTCTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAGTATGTGGGGAAAGGCTTCCCCAAGCTACTCATCCTCTAGGC  600

seq1  ATACCACACCTCACTCTCAGTGTACCGCACACGAGCAGGAGAAATATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACACCTCACTCTCAGTGTACCGCACACGAGCAGGAGAAATATGTG  650

seq1  ACCAAGCAGTATAACTCTGATTCTCTGAGAACCTTTCAGCGGTACATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAGTATAACTCTGATTCTCTGAGAACCTTTCAGCGGTACATGAG  700

seq1  AACTCACGTTGTGAATGGGCCATGTGAATGTGAAGTATGCTTAAAGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACGTTGTGAATGGGCCATGTGAATGTGAAGTATGCTTAAAGTACT  750

seq1  TTGGCTTTCCAGGTACATTGGAAATACACCAGGAGACTCAGAGTGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCCAGGTACATTGGAAATACACCAGGAGACTCAGAGTGAAAAC  800

seq1  AATCCCTATCAATACAAGGAATATGGAAAGACCTCTGTGGATATTAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTATCAATACAAGGAATATGGAAAGACCTCTGTGGATATTAGTTC  850

seq1  ACTATGCACACATGGAGGAGCGCAGGCTGTAGGAAAAGGTTATGAGTGTA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTATGCACACATGGAGGAGCGCA-GCTGTAGGAAAAGGTTATGAGTGTA  899

seq1  ACCAATGTGGGAAAGCTCTGAGCTCTTACAGTTCACTTCGAAGACATGAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCAATGTGGGAAAGCTCTGAGCTCTTACAGTTCACTTCG-AGACATGAA  948

seq1  AGAATCCATACTGAGAAAAAACCGTACAAGTGCAAACAGTGCGGGAAAGC  1000
      |||   |||||||||||||   ||||| ||||| |||||||| |||||| 
seq2  AGA--TCATACTGAGAAAA---CGTAC-AGTGC-AACAGTGC-GGAAAG-  989

seq1  CTTTCGATACCACAGTTATCTTCATTTACATGAAAGAATCCACACTGGTG  1050
      ||||||||| |||||||||| ||| ||||||| ||||   |||||| |||
seq2  CTTTCGATA-CACAGTTATC-TCA-TTACATG-AAGA--TCACACT-GTG  1032

seq1  AAAAACCCTATGAATGTAAACGATGTGGGAAAGCATTTATATTTCCTGGT  1100
        |||||||||| |||| ||||| ||||  |||||  || |||  |||||
seq2  --AAACCCTATG-ATGT-AACGAGGTGG--AAGCA--TAAATT--CTGGT  1072

seq1  GCCTTGCAGGTACATGAAAAAATTCATACTGGAGAAAAACGTCATGAATG  1150
      ||  |||| ||| |||||||   |||| ||||   ||||||||||| |||
seq2  GC--TGCA-GTA-ATGAAAA---TCAT-CTGG---AAAACGTCATG-ATG  1110

seq1  TAAACACTGTGGTAAAGCCTTTAGACGACAT  1181
      ||||| |||||   | ||||   ||||||||
seq2  TAAAC-CTGTG--TAGGCCT---GACGACAT  1135