BAC Information

Click to search

BAC

Clone NameB6Ng01-120H06
Chromosome8 (Build37)
Map Location 52,677,421 - 52,678,285
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039966, LOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120H06.bB6Ng01-120H06.g
ACCDH924395DH924396
length1,1911,098
definitionDH924395|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H06, 5' end.DH924396|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcctagtcactcccattctcgggtgtaatagtggggtgatgg
gcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtca
cgctgcgggttataaaagcagcgccattttcccggttcggaatcttcctg
agaagcaagcaataaagcttttgccgcagaagattctggtttgttgcgtc
tttcttgccggtcgagcgggacgcaataagtggcgccgaagaacccggga
actgtcatcacaccggcgcaaggaagatccctcgttcgcggggcagaatc
agaaccgtgggacaaaaggctctacaaggtacatacaatcttgaaatttc
tccagagttagaagcccttttgattgtttgcacagcgattatgaggactg
tcagcaaatggtagaagcggggcagaaagttctggacaaaattcaagaaa
gtctatcagaggtagagcggggagagaaagtaaaagtagagaggaaacaa
agtgcactgaagaatttaggcctttccacgggccttgagcccgaggaaaa
gagatataaaggaaagaatgccttgggagagataagaaaaagggatggaa
agggagagaagaagggagatcgagctggagaggcacataaggaaaggagc
ctctacccgccactggatgaatttaagcagctagctcttagtaactcaga
accagatgaaggaattagcgcctctgaagaaatggactcggaggaggaag
cagttcgttataagggagaaaggtaccagcaagataaaatgtaagctact
cagtccagaaaaaggcaaaaagcggctggcgaaagccagcttgctgctcg
gcctccggactgtcggcttcaggtcctagtgcacctccgctttatgtgca
gaggtagtggtcaatttttacctactcctcatgtagggtaaaccctcgtg
gcgtcagcattacagtctgcaatgatgtcactcatatttctcctttggga
gaatcatattacatgtttctattgacactgctctggtgtatgttgccaca
cttacagtgaaaacttcatgttaacaacactgtctagagctggaatgctt
ggccagcccaattcctgacgatattgggcagcattccttatatcacattg
catcaatgagttctcattgactgccttcttaaatcctcact
gaattccagggttattttgatgtgcattttcctgatgactaagaatattg
aaccctttttaggtggttctcatcatttgatattcctcagttgagaattc
tttgtttagctctgtacaccatttttaatagagtgatttggttctctgga
gtttaacctcttgagttctttgaatatattggctatttaccttctatcag
atgaaggattggtaaagatcttttcccaatctgttggttgccattttgtc
ctattgacagcatcctttgtcttacagacactttgcaattttatgaggtc
ccaattgttgatggttgatcttagagcataaggtatcgatgttctgttca
ggaaattttctcttgtgcccatgtgctcaaggctctcccccactttctct
tctattagtttcagtctatctgattttatgtggaggtccttgatccactt
tgacttgagctttgtacaaaaagataacagtggctcaatctgcattcttc
tatatgctaaccaccagttgagccaacaccatttgttgaaaatgctgtct
tttttctactggatggttttagatcctttgtgaaagatcacgtggtcata
ggtgtgtgggttcctttctgggtcttcaagtctattccactgatgtacct
gcctgtctttgtaacaatgccctacagtctgtaccactatttctcggtaa
tacaccttgaggtcagggatggtgattcccccagaaattcctccttcttg
atacataagaaaagtgggagtatcttacttacaaagtaagtagctacatc
tccactgagagtgagtacaattgatttagttattaaattccatgaatgat
catcaaaatacatgaaggttttttttcttttttctttttacactccagtc
tttattgccattctggtttgctctctgattgttctacatcccatatctct
ccctgtcccctgtctctagaggatgccccaaccttcatcaccaccccaca
gactttctactccctagggctcaagtttctggaggtaggtgcatctctct
actgagtcagactgcagtcctctgctgatatgtggggcctccatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52677421_52678285
seq2: B6Ng01-120H06.g_320_1166

seq1  TATTGACAGCATCCTTTGTCTTACAGACACTTTGCAATTTTATGAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACAGCATCCTTTGTCTTACAGACACTTTGCAATTTTATGAGGTCC  50

seq1  CAATTGTTGATGGTTGATCTTAGAGCATAAGGTATCGATGTTCTGTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTGATGGTTGATCTTAGAGCATAAGGTATCGATGTTCTGTTCAG  100

seq1  GAAATTTTCTCTTGTGCCCATGTGCTCAAGGCTCTCCCCCACTTTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCTCTTGTGCCCATGTGCTCAAGGCTCTCCCCCACTTTCTCTT  150

seq1  CTATTAGTTTCAGTCTATCTGATTTTATGTGGAGGTCCTTGATCCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTTTCAGTCTATCTGATTTTATGTGGAGGTCCTTGATCCACTTT  200

seq1  GACTTGAGCTTTGTACAAAAAGATAACAGTGGCTCAATCTGCATTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGCTTTGTACAAAAAGATAACAGTGGCTCAATCTGCATTCTTCT  250

seq1  ATATGCTAACCACCAGTTGAGCCAACACCATTTGTTGAAAATGCTGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAACCACCAGTTGAGCCAACACCATTTGTTGAAAATGCTGTCTT  300

seq1  TTTTCTACTGGATGGTTTTAGATCCTTTGTGAAAGATCACGTGGTCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTGGATGGTTTTAGATCCTTTGTGAAAGATCACGTGGTCATAG  350

seq1  GTGTGTGGGTTCCTTTCTGGGTCTTCAAGTCTATTCCACTGATGTACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGTTCCTTTCTGGGTCTTCAAGTCTATTCCACTGATGTACCTG  400

seq1  CCTGTCTTTGTAACAATGCCCTACAGTCTGTACCACTATTTCTCGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTTGTAACAATGCCCTACAGTCTGTACCACTATTTCTCGGTAAT  450

seq1  ACACCTTGAGGTCAGGGATGGTGATTCCCCCAGAAATTCCTCCTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGAGGTCAGGGATGGTGATTCCCCCAGAAATTCCTCCTTCTTGA  500

seq1  TACATAAGAAAAGTGGGAGTATCTTACTTACAAAGTAAGTAGCTACATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGAAAAGTGGGAGTATCTTACTTACAAAGTAAGTAGCTACATCT  550

seq1  CCACTGAGAGTGAGTACAATTGATTTAGTTATTAATTTCCATGAATGATC  600
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCACTGAGAGTGAGTACAATTGATTTAGTTATTAAATTCCATGAATGATC  600

seq1  ATCAAAATACATGAAGGTTTTTTTTCTTTATTCTTTTTTACACTCCAGTC  650
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  ATCAAAATACATGAAGGTTTTTTTTCTTTTTTC-TTTTTACACTCCAGTC  649

seq1  TTTATTGCCATTCTGGTTTGCTCTCTGATTGTTCTACATCCCATATCTCC  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTATTGCCATTCTGGTTTGCTCTCTGATTGTTCTACATCCCATATCT-C  698

seq1  TCCCTGTCCCCCTGTCTCTAAGAGGATGCCCCAACCTCCATCACCACCCC  750
      ||||||| ||||||||||| ||||||||||||||||| ||||||||||||
seq2  TCCCTGT-CCCCTGTCTCT-AGAGGATGCCCCAACCTTCATCACCACCCC  746

seq1  ACCAGACTTTCCTACTCCCTAGGGCTTCAAGTCTCCTGAGGGTTAGGTGC  800
      | |||||||| |||||||||||||| |||||| ||  ||||  |||||||
seq2  A-CAGACTTT-CTACTCCCTAGGGC-TCAAGTTTCTGGAGG--TAGGTGC  791

seq1  ATCTTCTCTTACTGAGTCAAGACTTGGCAGTCCTCTGCTGTATATGTGTT  850
      ||| |||| ||||||||| |||||  |||||||||||||| ||||||   
seq2  ATC-TCTC-TACTGAGTC-AGACT--GCAGTCCTCTGCTG-ATATGT---  832

seq1  GGGGGCCT-CATATCA  865
       ||||||| |||||||
seq2  -GGGGCCTCCATATCA  847