BAC Information

Click to search

BAC

Clone NameB6Ng01-120J20
Chromosome8 (Build37)
Map Location 16,761,435 - 16,859,127
singlet/doubletdoublet
Overlap geneCsmd1
Upstream geneLOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120J20.bB6Ng01-120J20.g
ACCDH924515DH924516
length8591,124
definitionDH924515|Mus musculus domesticus DNA, BAC clone: B6Ng01-120J20, 5' end.DH924516|Mus musculus domesticus DNA, BAC clone: B6Ng01-120J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,858,268 - 16,859,127)(16,761,435 - 16,762,574)
sequence
gaattccactgttcccaaggcatgccactgagttaatgacaatggtgggt
tcctgcctttgttacttgagaaaggtcatgaatatattgtattagagtag
tcattgtgtggcttggatcaccctgacctccctgacaactcacaagcttg
ggacattgacatgtcagtgacattactataattaaacagaaaactaaaga
agccgtgctaggacaaaggagacagtgatctgagacaataaagtcctgac
tccatttctgtagcctgtggcttaagtgaaaatcttacctgtggtcaaga
agatgaggatgctgatgtctgtacgactggcactccaatttatcctccag
ggtctcagggatggtttttacaaacatcttgagatgtaggccaaatatca
ttataattcttggtcttaattatacaaggtttacagtctcttaagatggc
aatacactgctaaagtgtggaggcaatactgaaagtattttgtccttata
tgtagtagtgggccctttacctccctgtgacaatccttaaaggctcccat
agtagaattatcctccaccatcactatctatccacattcaagtgatcttt
tgcataagcaacctctgtgtaacaggctcagtatgttctctacaaattaa
gatgcctgtgtcaacgccccttgtcttcaaatttattgaatatagtattg
catcaccgtcaggtataaaagctggggcacttttactgtcactgactgac
tacactggccatggacagatgactccatatcactgtttaagcttctataa
gacaggtaggtgaccatgcagccccttctctcagattatttgtgtgtggg
tatgggggg
gaattccattctccttgggtgttttgcagcttcctagtccctgtgcattc
aactttcctgtttgactttctgaggaaagaccatggagattatcattttg
aactttgaagataaattactaaaagaaaatggttttctgattgcaacaat
atatgaaatttaaattctattttaatctttttaaattttactttagtttg
tttagcttttttgacaaatgttctgatattttctatttaccttctacaca
aggccattttccaccattattcagaactctcacagggccttttcaaagtg
aaaacacctgtttaccattctggaagttttaattaataattccttaattt
ttcttatttgtttcctcagctttatattctagtcccttccttgaggggtt
ctaaattttaatttttattatcttatctttgtgcctcaggacacatttct
tttctgtatagtgttctgttttccctttatagatagaatagatcagatta
tttctcaaagtgtattgactgttatgcatttggattctacttttttagaa
tcatttttacctttttattgtttaccctccataatcatgttgggttcaga
atcttctttttagactattttcatggccatcttctcatatttggaggatg
atgggaactgtcaatttcagtgggagaagtgagctggctcacatcagtga
aggtctaactttacacggtgatgctagggatgtccttatgagccacgcat
ccttgcactgaagcagatcctggcctgtcctcatttctttttattgacat
ctcttacacatcttcctacatgaaggtacacgtaatcattaagcttggga
aggctagagggttccatgtatataaattgctaccaatctcttattatttg
atccattttatatacagatgtgctggggtcttcttcagggcaatcttttt
tgttggtttatatgagaagtccaattcatgcataatgtttaaatcaatta
cttcccattttcttttctaattctcaccacttttacagttcatgggctcc
tctttttattagactggatcctacttgtgttatcgatgcatgcagtgtgg
gacccctactgtacatggactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_16858268_16859127
seq2: B6Ng01-120J20.b_49_907 (reverse)

seq1  CCCCCCATACCCACACACAAATAATCCTGAGAGAAGGGGCTGCATGGTCA  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCCCATACCCACACACAAATAAT-CTGAGAGAAGGGGCTGCATGGTCA  49

seq1  CCTACCTGTCTTATAGAAGCTTAAACAGTGATATGGAGTCATCTGTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGTCTTATAGAAGCTTAAACAGTGATATGGAGTCATCTGTCCAT  99

seq1  GGCCAGTGTAGTCAGTCAGTGACAGTAAAAGTGCCCCAGCTTTTATACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGTAGTCAGTCAGTGACAGTAAAAGTGCCCCAGCTTTTATACCT  149

seq1  GACGGTGATGCAATACTATATTCAATAAATTTGAAGACAAGGGGCGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTGATGCAATACTATATTCAATAAATTTGAAGACAAGGGGCGTTGA  199

seq1  CACAGGCATCTTAATTTGTAGAGAACATACTGAGCCTGTTACACAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCATCTTAATTTGTAGAGAACATACTGAGCCTGTTACACAGAGGT  249

seq1  TGCTTATGCAAAAGATCACTTGAATGTGGATAGATAGTGATGGTGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGCAAAAGATCACTTGAATGTGGATAGATAGTGATGGTGGAGGA  299

seq1  TAATTCTACTATGGGAGCCTTTAAGGATTGTCACAGGGAGGTAAAGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTACTATGGGAGCCTTTAAGGATTGTCACAGGGAGGTAAAGGGCC  349

seq1  CACTACTACATATAAGGACAAAATACTTTCAGTATTGCCTCCACACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTACATATAAGGACAAAATACTTTCAGTATTGCCTCCACACTTTA  399

seq1  GCAGTGTATTGCCATCTTAAGAGACTGTAAACCTTGTATAATTAAGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTATTGCCATCTTAAGAGACTGTAAACCTTGTATAATTAAGACCA  449

seq1  AGAATTATAATGATATTTGGCCTACATCTCAAGATGTTTGTAAAAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATAATGATATTTGGCCTACATCTCAAGATGTTTGTAAAAACCAT  499

seq1  CCCTGAGACCCTGGAGGATAAATTGGAGTGCCAGTCGTACAGACATCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGACCCTGGAGGATAAATTGGAGTGCCAGTCGTACAGACATCAGC  549

seq1  ATCCTCATCTTCTTGACCACAGGTAAGATTTTCACTTAAGCCACAGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATCTTCTTGACCACAGGTAAGATTTTCACTTAAGCCACAGGCTA  599

seq1  CAGAAATGGAGTCAGGACTTTATTGTCTCAGATCACTGTCTCCTTTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGAGTCAGGACTTTATTGTCTCAGATCACTGTCTCCTTTGTCC  649

seq1  TAGCACGGCTTCTTTAGTTTTCTGTTTAATTATAGTAATGTCACTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACGGCTTCTTTAGTTTTCTGTTTAATTATAGTAATGTCACTGACAT  699

seq1  GTCAATGTCCCAAGCTTGTGAGTTGTCAGGGAGGTCAGGGTGATCCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATGTCCCAAGCTTGTGAGTTGTCAGGGAGGTCAGGGTGATCCAAGC  749

seq1  CACACAATGACTACTCTAATACAATATATTCATGACCTTTCTCAAGTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGACTACTCTAATACAATATATTCATGACCTTTCTCAAGTAAC  799

seq1  AAAGGCAGGAACCCACCATTGTCATTAACTCAGTGGCATGCCTTGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGGAACCCACCATTGTCATTAACTCAGTGGCATGCCTTGGGAAC  849

seq1  AGTGGAATTC  860
      ||||||||||
seq2  AGTGGAATTC  859

seq1: chr8_16761435_16762574
seq2: B6Ng01-120J20.g_67_1190

seq1  GAATTCCATTCTCCTTGGGTGTTTTGCAGCTTCCTAGTCCCTGTGCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTCCTTGGGTGTTTTGCAGCTTCCTAGTCCCTGTGCATTC  50

seq1  AACTTTCCTGTTTGACTTTCTGAGGAAAGACCATGGAGATTATCATTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTGTTTGACTTTCTGAGGAAAGACCATGGAGATTATCATTTTG  100

seq1  AACTTTGAAGATAAATTACTAAAAGAAAATGGTTTTCTGATTGCAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAAGATAAATTACTAAAAGAAAATGGTTTTCTGATTGCAACAAT  150

seq1  ATATGAAATTTAAATTCTATTTTAATCTTTTTAAATTTTACTTTAGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAATTTAAATTCTATTTTAATCTTTTTAAATTTTACTTTAGTTTG  200

seq1  TTTAGCTTTTTTGACAAATGTTCTGATATTTTCTATTTACCTTCTACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTTTTTTGACAAATGTTCTGATATTTTCTATTTACCTTCTACACA  250

seq1  AGGCCATTTTCCACCATTATTCAGAACTCTCACAGGGCCTTTTCAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTTTCCACCATTATTCAGAACTCTCACAGGGCCTTTTCAAAGTG  300

seq1  AAAACACCTGTTTACCATTCTGGAAGTTTTAATTAATAATTCCTTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCTGTTTACCATTCTGGAAGTTTTAATTAATAATTCCTTAATTT  350

seq1  TTCTTATTTGTTTCCTCAGCTTTATATTCTAGTCCCTTCCTTGAGGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTGTTTCCTCAGCTTTATATTCTAGTCCCTTCCTTGAGGGGTT  400

seq1  CTAAATTTTAATTTTTATTATCTTATCTTTGTGCCTCAGGACACATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTAATTTTTATTATCTTATCTTTGTGCCTCAGGACACATTTCT  450

seq1  TTTCTGTATAGTGTTCTGTTTTCCCTTTATAGATAGAATAGATCAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATAGTGTTCTGTTTTCCCTTTATAGATAGAATAGATCAGATTA  500

seq1  TTTCTCAAAGTGTATTGACTGTTATGCATTTGGATTCTACTTTTTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAAGTGTATTGACTGTTATGCATTTGGATTCTACTTTTTTAGAA  550

seq1  TCATTTTTACCTTTTTATTGTTTACCCTCCATAATCATGTTGGGTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTACCTTTTTATTGTTTACCCTCCATAATCATGTTGGGTTCAGA  600

seq1  ATCTTCTTTTTAGACTATTTTCATGGCCATCTTCTCATATTTGGAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTTTAGACTATTTTCATGGCCATCTTCTCATATTTGGAGGATG  650

seq1  ATGGGAACTGTCAATTTCAGTGGGAGAAGTGAGCTGGCTCACATCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACTGTCAATTTCAGTGGGAGAAGTGAGCTGGCTCACATCAGTGA  700

seq1  AGGTCTAACTTTACACGGTGATGCTAGGGATGTCCTTATGAGCCACGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTAACTTTACACGGTGATGCTAGGGATGTCCTTATGAGCCACGCAT  750

seq1  CCTTGCACTGAAGCAGATCCTGGCCTGTCCTCATTTC-TTTTATTGACAT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTTGCACTGAAGCAGATCCTGGCCTGTCCTCATTTCTTTTTATTGACAT  800

seq1  CTCTTACACATCTTCCTACATGAAGGTACACGTAATCATTAAGCTT-GGA  848
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTTACACATCTTCCTACATGAAGGTACACGTAATCATTAAGCTTGGGA  850

seq1  AGGCTAGAGGGTTCCATGTAATATAAATTGCTACCAATCTCTTA-TATTT  897
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  AGGCTAGAGGGTTCCATGT-ATATAAATTGCTACCAATCTCTTATTATTT  899

seq1  GATCCATTTTATATACAGATGTGCTGGGGTCTTCTTCAGGGGCAATCTAT  947
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  GATCCATTTTATATACAGATGTGCTGGGGTCTTCTTCA-GGGCAATCT-T  947

seq1  TTTTGTTTGTTTATATTGAGAAGTCCCAATTCATGCATAAATTGTTTAAA  997
      ||||||| ||||||| |||||||| |||||||||||||||  ||||||||
seq2  TTTTGTTGGTTTATA-TGAGAAGT-CCAATTCATGCATAA--TGTTTAAA  993

seq1  TCAAATTACTTCCCATTTTCTTTTCTATTTCTCCACCACTTTTTAACAGT  1047
      || |||||||||||||||||||||||| |||| ||||||||||  |||| 
seq2  TC-AATTACTTCCCATTTTCTTTTCTAATTCT-CACCACTTTT--ACAG-  1038

seq1  TTCATGGGCTCTCTTTTTTATTAATGTACT-GAGTCTACTTTGTGTTATC  1096
      |||||||||||   |||||||||    ||| ||  |||| ||||||||||
seq2  TTCATGGGCTCCTCTTTTTATTA---GACTGGATCCTAC-TTGTGTTATC  1084

seq1  TGTATGCATGCAGGTGTGGGACCACCTACTGGACAATGACTTTC  1140
         ||||||||| |||||||||| ||||||| |||  |||||||
seq2  --GATGCATGCA-GTGTGGGACC-CCTACTGTACATGGACTTTC  1124