BAC Information

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BAC

Clone NameB6Ng01-120P06
Chromosome8 (Build37)
Map Location 109,851,767 - 109,975,964
singlet/doubletdoublet
Overlap geneNfat5, Nqo1, Nob1, Wwp2, LOC100042812
Upstream geneSmpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
Downstream genePsmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120P06.bB6Ng01-120P06.g
ACCDH924761DH924762
length1,1721,109
definitionDH924761|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P06, 5' end.DH924762|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,974,783 - 109,975,964)(109,851,767 - 109,852,890)
sequence
gaattcttatactcaaatgtgatctttggaaaattatcaggtttcattta
gaaaatattggttccttgagctgtgtggatattctaaaccttaacacatt
tcattatacaactttaaaaaatcacatttgtcaatgtgctcggtgatctc
accagacgggcctccaaacagcagaaagctgtcaagcctgtcgtggtaga
gtggcccaaaattctaattttcttgtaagaacgattttgttactggcaac
aaacactgtcagttattttcctcagagtgtcaggtttgcttcattcagtt
tgaagaaaatgtctgccaatttcacaaatctaataactccaacttgcttc
tcagttgtttgctaaaggaaaaatcatatttcacggggaaaaaagcaaca
accctgctctagattcaaggactgctcgagtacttgccttcagcggcacg
cggcatgtgcacactccaaaggggaggctatgaaaacacaatcaagagtc
agatgggctggcaagatggctcagtggcgatgacacgtcacacaagcctg
gaaagctgacttcaatctatagagctgaacacacacagtggaaggagaaa
accggctccacagagatgtctcctggcctctgatgaccacaaacgccatg
gcacttgcatctccctaccccttacacacacacacacacacacacacaca
cacacacacacaaaagtacatagggacaataataataaataggagctgaa
gatggctcagctgttcagagcatatactactcctttagagggcctgaatt
tagtgcccacacaaatatcaagcaactcacaactccatataactccaact
ccaggggatcccacacgcagtgccccttcagcacctgcacaagcatgcat
agacacacacatgaatgcaaacttttaaaatataaaaaatacaacaagtt
ctcacttgtgttgtttgttttctgagacacagtgtcattatgtagcactg
gctttcctgacatgctcttgtagacaggctggctcttaactcacagagat
cctctgtctcagcctctgagtgctgggaacaagttagcacactcagcagc
tccttcaagaatggaaatgaaatgatctcctaaactggtggagacaaaaa
cgtgaagacaacagaccttgtg
gaattctcttgggaagatattaagaatttaaattcagtatgtcagtggat
gatagattcagaaataagaacttttaaaacagtgttctaggctctgtaaa
tagctatgacagaggccattttcttaaagaaaaaaaagtcaatgaattaa
tagtattagcaaaatgaggagttgaccaagagaaatgaaagttacagcaa
tcaaatattttagttacatgtttacagtttttaatcctgagatttacttg
tttacagtaataaatctttcatggagatgagtgttaatctatattgtcta
tactatgccaggtagtatacttataataccagcatttgagaagttgggag
attagtagttcagagtcaacctctgctacatagtgaatttgaagccagca
tgagctacatgagaccctgtcccttgccccaaaaaattaatttgcaaatt
aatttgtttgattttatttggggatatttgattggcattatatctcttag
attatatttgggataaattgtcttcaaactccagaggttcctcctgcctt
tgcctttaggatgctggaattaaagtaggtatgtgccttctatcctgtga
atagttcattgtttagctcaagaatttaagttaaaaaatctatagaatct
atgcctgcctgcaaggatgactgctagtttgagggcagcctaggttactt
aagagtgtcttgccgggcagtggtggcacacgcctttaatcccagcactc
gggaggcagaggcaggcagatttctgagtttgaggccagcctggtctaca
aagtgagtttcaggacagccagggctatacagagaaaccctgtctcgaaa
aaaaaaaaaaaagagtgtctttatctcaaaaaacaaacaaacaaaataca
acaaaaaaggtaaccaaagaattgattaactataggttttatattcagtg
agaagacttaataccagtatacatcatgttttcataaaattagtacttta
ctttgaatattaagttagtattttatttgtatgtgtgtgtacaggatctt
tgtagcccaggcaggcttctaaattcctttgtttagacagccttgcctgg
gccagatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109974783_109975964
seq2: B6Ng01-120P06.b_48_1219 (reverse)

seq1  CACAAGGGCTGTTGTCTTCACGTTCTTTGTCACACACAGTCTTGGGAGAA  50
      ||||||| |||||||||||||||| |||||| |   |||| || ||||| 
seq2  CACAAGGTCTGTTGTCTTCACGTT-TTTGTCTCCACCAGT-TTAGGAGAT  48

seq1  CACTTCAGTTCACAATCCTTGAAGGAGCTGCCTGTGTGGTGCATAACTTG  100
      || |||| ||  | || ||||||||||||| ||| || |||| |||||||
seq2  CATTTCATTT--CCATTCTTGAAGGAGCTG-CTGAGT-GTGC-TAACTTG  93

seq1  CTCCCAGCACTCAGGAGGCTGAGACAGGAGGATCTCTGTGAG-TAAGAGG  149
       |||||||||||| |||||||||||| ||||||||||||||| ||||| |
seq2  TTCCCAGCACTCA-GAGGCTGAGACA-GAGGATCTCTGTGAGTTAAGA-G  140

seq1  CCAGCCTGGTCTACAAGAGCATGTCAGGAAAGCCAGTGCTACATAGTGAC  199
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAGCCT-GTCTACAAGAGCATGTCAGGAAAGCCAGTGCTACATAATGAC  189

seq1  ACTGTGTCTCAGAAAACAAACAACACAAGTGAGAACTTGTTGTA-TTTTT  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTGTGTCTCAGAAAACAAACAACACAAGTGAGAACTTGTTGTATTTTTT  239

seq1  ATATTTTAAAAGTTTGCATTCATGTGTGTGTCTATGCATGCTTGTGCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAAAGTTTGCATTCATGTGTGTGTCTATGCATGCTTGTGCAGG  289

seq1  TGCCTGAAGGGGCCACTGCGTGTGGGATCCCCTGGAGTTGGAGTTATATG  348
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TG-CTGAAGGGG-CACTGCGTGTGGGATCCCCTGGAGTTGGAGTTATATG  337

seq1  GAGTTGTGAGTTGCTTGATATTTGTGTGGGCACTAAATTCAGGCCCTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTGAGTTGCTTGATATTTGTGTGGGCACTAAATTCAGGCCCTCTA  387

seq1  AAGGAGTAGTATATGCTCTGAACAGCTGAGCCATCTTCAGCTCCTATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAGTATATGCTCTGAACAGCTGAGCCATCTTCAGCTCCTATTTA  437

seq1  TTATTATTGTCCCTATGTAC-TTTGTGTGTGTGTGTGTGTGTGTGTGTGT  497
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTATTGTCCCTATGTACTTTTGTGTGTGTGTGTGTGTGTGTGTGTGT  487

seq1  GTGTGTGTGTGTAAGGGGTAGGGAGATGCAAGTGCCATGGCGTTTGTGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTAAGGGGTAGGGAGATGCAAGTGCCATGGCGTTTGTGGT  537

seq1  CATCAGAGGCCAGGAGACATCTCTGTGGAGCCGGTTTTCTCCTTCCACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGGCCAGGAGACATCTCTGTGGAGCCGGTTTTCTCCTTCCACTG  587

seq1  TGTGTGTTCAGCTCTATAGATTGAAGTCAGCTTTCCAGGCTTGTGTGACG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTCAGCTCTATAGATTGAAGTCAGCTTTCCAGGCTTGTGTGACG  637

seq1  TGTCATCGCCACTGAGCCATCTTGCCAGCCCATCTGACTCTTGATTGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCGCCACTGAGCCATCTTGCCAGCCCATCTGACTCTTGATTGTGT  687

seq1  TTTCATAGCCTCCCCTTTGGAGTGTGCACATGCCGCGTGCCGCTGAAGGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGCCTCCCCTTTGGAGTGTGCACATGCCGCGTGCCGCTGAAGGC  737

seq1  AAGTACTCGAGCAGTCCTTGAATCTAGAGCAGGGTTGTTGCTTTTTTCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCGAGCAGTCCTTGAATCTAGAGCAGGGTTGTTGCTTTTTTCCC  787

seq1  CGTGAAATATGATTTTTCCTTTAGCAAACAACTGAGAAGCAAGTTGGAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAATATGATTTTTCCTTTAGCAAACAACTGAGAAGCAAGTTGGAGT  837

seq1  TATTAGATTTGTGAAATTGGCAGACATTTTCTTCAAACTGAATGAAGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATTTGTGAAATTGGCAGACATTTTCTTCAAACTGAATGAAGCAA  887

seq1  ACCTGACACTCTGAGGAAAATAACTGACAGTGTTTGTTGCCAGTAACAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACACTCTGAGGAAAATAACTGACAGTGTTTGTTGCCAGTAACAAA  937

seq1  ATCGTTCTTACAAGAAAATTAGAATTTTGGGCCACTCTACCACGACAGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCTTACAAGAAAATTAGAATTTTGGGCCACTCTACCACGACAGGC  987

seq1  TTGACAGCTTTCTGCTGTTTGGAGGCCCGTCTGGTGAGATCACCGAGCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCTTTCTGCTGTTTGGAGGCCCGTCTGGTGAGATCACCGAGCAC  1037

seq1  ATTGACAAATGTGATTTTTTAAAGTTGTATAATGAAATGTGTTAAGGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAAATGTGATTTTTTAAAGTTGTATAATGAAATGTGTTAAGGTTT  1087

seq1  AGAATATCCACACAGCTCAAGGAACCAATATTTTCTAAATGAAACCTGAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATCCACACAGCTCAAGGAACCAATATTTTCTAAATGAAACCTGAT  1137

seq1  AATATTCCAAAGATCACATTTGAGTATAAGAATTC  1182
      ||| |||||||||||||||||||||||||||||||
seq2  AATTTTCCAAAGATCACATTTGAGTATAAGAATTC  1172

seq1: chr8_109851767_109852890
seq2: B6Ng01-120P06.g_68_1176

seq1  GAATTCTCTTGGGAAGATATTAAGAATTTAAATTCAGTATGTCAGTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGGGAAGATATTAAGAATTTAAATTCAGTATGTCAGTGGAT  50

seq1  GATAGATTCAGAAATAAGAACTTTTAAAACAGTGTTCTAGGCTCTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTCAGAAATAAGAACTTTTAAAACAGTGTTCTAGGCTCTGTAAA  100

seq1  TAGCTATGACAGAGGCCATTTTCTTAAAGAAAAAAAAGTCAATGAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGACAGAGGCCATTTTCTTAAAGAAAAAAAAGTCAATGAATTAA  150

seq1  TAGTATTAGCAAAATGAGGAGTTGACCAAGAGAAATGAAAGTTACAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAGCAAAATGAGGAGTTGACCAAGAGAAATGAAAGTTACAGCAA  200

seq1  TCAAATATTTTAGTTACATGTTTACAGTTTTTAATCCTGAGATTTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTTTAGTTACATGTTTACAGTTTTTAATCCTGAGATTTACTTG  250

seq1  TTTACAGTAATAAATCTTTCATGGAGATGAGTGTTAATCTATATTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGTAATAAATCTTTCATGGAGATGAGTGTTAATCTATATTGTCTA  300

seq1  TACTATGCCAGGTAGTATACTTATAATACCAGCATTTGAGAAGTTGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGCCAGGTAGTATACTTATAATACCAGCATTTGAGAAGTTGGGAG  350

seq1  ATTAGTAGTTCAGAGTCAACCTCTGCTACATAGTGAATTTGAAGCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGTTCAGAGTCAACCTCTGCTACATAGTGAATTTGAAGCCAGCA  400

seq1  TGAGCTACATGAGACCCTGTCCCTTGCCCCAAAAAATTAATTTGCAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACATGAGACCCTGTCCCTTGCCCCAAAAAATTAATTTGCAAATT  450

seq1  AATTTGTTTGATTTTATTTGGGGATATTTGATTGGCATTATATCTCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTGATTTTATTTGGGGATATTTGATTGGCATTATATCTCTTAG  500

seq1  ATTATATTTGGGATAAATTGTCTTCAAACTCCAGAGGTTCCTCCTGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGGGATAAATTGTCTTCAAACTCCAGAGGTTCCTCCTGCCTT  550

seq1  TGCCTTTAGGATGCTGGAATTAAAGTAGGTATGTGCCTTCTATCCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAGGATGCTGGAATTAAAGTAGGTATGTGCCTTCTATCCTGTGA  600

seq1  ATAGTTCATTGTTTAGCTCAAGAATTTAAGTTAAAAAATCTATAGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATTGTTTAGCTCAAGAATTTAAGTTAAAAAATCTATAGAATCT  650

seq1  ATGCCTGCCTGCAAGGATGACTGCTAGTTTGAGGGCAGCCTAGGTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCCTGCAAGGATGACTGCTAGTTTGAGGGCAGCCTAGGTTACTT  700

seq1  AAGAGTGTCTTGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTCTTGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTC  750

seq1  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACA  800

seq1  AAGTGAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAGTGAGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG---  847

seq1  AAAAAAAAAAAAAAAAAGAGTGTCTTTATCTCAAAAAACAAACAAACAAA  900
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --AAAAAAAAAAAAAAAGAGTGTCTTTATCTCAAAAAACAAACAAACAAA  895

seq1  AATAACAACAAAAAAAAGGTAACCAAAGAATTGATTAAACTATAGGTTTT  950
      |   |||||  ||||||||||||||||||||||||| |||||||||||||
seq2  A--TACAAC--AAAAAAGGTAACCAAAGAATTGATT-AACTATAGGTTTT  940

seq1  ATAATTCAGTGGAAGAGACTTAATAACCAGTATACAATTCATTGTTTTCA  1000
      || ||||||| ||  ||||||||| |||||||||||  ||| ||||||||
seq2  AT-ATTCAGT-GAGAAGACTTAAT-ACCAGTATACA--TCA-TGTTTTCA  984

seq1  TAAAATTAGTACTTTACTTTGAATAATTAAGTTAGTATTTATTTTGTATG  1050
      |||||||||||||||||||||||| |||||||||||||||  ||||||||
seq2  TAAAATTAGTACTTTACTTTGAAT-ATTAAGTTAGTATTTTATTTGTATG  1033

seq1  TGTGTGTACAGGATCTTTGTAGCCCAAGCAGGCTTC-AAATT-CTCTGTA  1098
      |||||||||||||||||||||||||| ||||||||| ||||| || ||| 
seq2  TGTGTGTACAGGATCTTTGTAGCCCAGGCAGGCTTCTAAATTCCTTTGTT  1083

seq1  TAGACAAGCCTAG-CTTGGCCAGATCC  1124
      ||||| ||||| | || ||||||||||
seq2  TAGAC-AGCCTTGCCTGGGCCAGATCC  1109