BAC Information

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BAC

Clone NameB6Ng01-121D09
Chromosome8 (Build37)
Map Location 45,771,773 - 45,928,079
singlet/doubletdoublet
Overlap geneLOC100039508
Upstream geneLOC100039472, LOC547011, LOC622263
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D09.bB6Ng01-121D09.g
ACCDH924951DH924952
length1,1621,161
definitionDH924951|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D09, 5' end.DH924952|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,926,902 - 45,928,079)(45,771,773 - 45,772,942)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagcccaccttcttgagttctttatatattggatattagtcccct
atctgatttaggataggtaaagatcctttcccaatctgttggtggtcttt
ttgtcttgttcacagtgtcttttgccttgcagaagctttcaactttatga
ggtcccatttatcgattctcaatctcactgcacaagccattgctgttcta
ttcaggaatttttaccctgtacccatatcttcgagtgagcaagacttcta
aatgaagttgccttcctttcctaggagacttgaaacttcctgtgtgttgt
tttatccaaatatatatatatatatatatatatatatatatatatatata
aataaagttttgatatgggctggagagatgactcatttgttaaggccact
ggctgcttgctcttccagagcttctgagttcaattcccagcaaccacata
gtggctcacaaccatggttaatgagatccagtgtactcttctggtgtgtc
tgaagacagttacagtgtactcatataaatgaaatagataaatcttaaaa
aaaagttttgatgtaaacactattacagtttatattctaaagaaccaaca
tgtattgtgaaagactggtgaatgtcacctgagattaataacaacagcaa
caaacaacttttttaagaaaccatgaatgcaaataattcctaatgacccc
atcaaaggctcctatcatttatccaaattatatgccatggatcagcaagc
gccttgacaaggaaagtttctttatatgtgacataaatcaccacttgcta
ccttatttaaaaactggatgatgataacagccctgtgactccataaatct
gagtttctaatattatgcagagaacataaaacctgtttatgcattataat
gcagcaatgatgtatctgatcgcaatcattgccatactaaattactaacc
tgcctatagcgtgcataatgacagtttgcaaaaggctcggaatttaaacg
ttggatttcaccccgccatccaatccctgaagcaataagagagacctatg
tatccaagcaccaaatcctttacctaatagatgtgatttcacggggagaa
ttttaagtcctt
gaattcagcccctctgataaggctcttcactgtatctgttttgaagaggc
ccctactcctccttagaaattaacctatctttacctataagttgcaactc
catcaaaactcttcgctaccttgagctgacaggacgtgttatagcagtgg
gtatgaaagcttagtccgagctgccctctagaacagtggttctcaaacct
ttgagtcatgaccactccccccacccccttggcaaacctctagctcctaa
aatatttacattgcaattcacagcagcagcaagatttacagtcatgaagt
agcaacgaaaataaatgtatggttggggatcaccacaacatgagggacgg
tgttgaagggtcgcagcttcaggaaggttaatactaggactgcactagga
catggaggagaccggaaatggcttagacagaggagcctctaccactgcag
agctgaaattctctttttctgctgtaagtctcatttgggttccaggtact
cactgagcctagctttttctgccctgaccctgcttttctctttggacatt
gtcacatcctgtcccgcagccaagaagagggcgccaccctcccctgttga
gatctcttctctcttattcccactgtttgcctcattcaggccggcctgga
gatgttgtgtgcccctacccaggtcactgggaacacagtaactcgtagaa
attagtctagaattcagaggaagggataattagaacgctctttcccacca
cgtacgctcttagtgtcacgtggttcactccaagtgagttgctgtccacc
tctctgagaaagaccccgcctccttgtgcaaccacaggaggtgctgtggt
tcagttaccgggtcactcccctgggtgctcaggtactgtggtcctgagtt
tagggaaaggctttaaaattgctagctgctccagctattgccaagaaagc
tccactgcatgagtcatattttactctgtctcatccagacgtggccatag
gcccatagttaataaagaacagacgatttatgaaaaagttttcaggagct
aaaaaccccacacttaaggaaaaaaatcgcccatttcatatctagttgta
aattagacgtggggaaagccagttccgaaagctttctagatgtgacctcc
gttaaccgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_45926902_45928079
seq2: B6Ng01-121D09.b_50_1211 (reverse)

seq1  AAGGACATTTAAAAATTCTCCCCGCTGAAAATCACATCTTACTCAGTTAA  50
      ||||||   | ||||||||||||| || |||||||||||   | || |||
seq2  AAGGAC---TTAAAATTCTCCCCG-TG-AAATCACATCT--ATTAGGTAA  43

seq1  AGAGATTTGTTGCTTTGATACATATGGTTTTTCTCTTTAATTGCTTCAGG  100
      || |||||| ||||| |||||||| |     ||||| | |||||||||||
seq2  AG-GATTTGGTGCTTGGATACATAGG-----TCTCTCTTATTGCTTCAGG  87

seq1  GATTTGGATTGC-GGGTGAAATCAAACGTTAAAATTCCGAGCCTTTTGCA  149
      || |||||| || |||||||||| |||||| |||||||||||||||||||
seq2  GA-TTGGATGGCGGGGTGAAATCCAACGTTTAAATTCCGAGCCTTTTGCA  136

seq1  AACTTGTCATTATGCACGCTATAGGCAAGTTAGTAATTTAGTTATGCCAA  199
      ||| ||||||||||||||||||||||| ||||||||||||| |||| |||
seq2  AAC-TGTCATTATGCACGCTATAGGCAGGTTAGTAATTTAG-TATGGCAA  184

seq1  TGATTGCGATCAGATACATCATTGCTGCATTATAATGCATAAACAGGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCGATCAGATACATCATTGCTGCATTATAATGCATAAACAGGTTT  234

seq1  TATGTTCTTCTGCATAATATTAGAAACTCAGATTTATGGAGTCACAGGGC  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTC-TCTGCATAATATTAGAAACTCAGATTTATGGAGTCACAGGGC  283

seq1  TGTTATCATCATCCAGTTTTTAAATAAGGTAGCAAGTGGTGATTTATGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCATCATCCAGTTTTTAAATAAGGTAGCAAGTGGTGATTTATGTC  333

seq1  ACATATAAAG-AACTTTCCTTGTCAAGGCGCTTGCTGATCCATGGCATAT  398
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAAGAAACTTTCCTTGTCAAGGCGCTTGCTGATCCATGGCATAT  383

seq1  AATTTGGATAAATGATAGGAGCCTTTGATGGGGTCATTAGGAATTATTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGATAAATGATAGGAGCCTTTGATGGGGTCATTAGGAATTATTTG  433

seq1  CATTCATGGTTTCTT-AAAAAGTTGTTTGTTGCTGTTGTTATTAATCTCA  497
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CATTCATGGTTTCTTAAAAAAGTTGTTTGTTGCTGTTGTTATTAATCTCA  483

seq1  GGTGACATTCACCAGTCTTTCACAATACATGTTGGTTCTTTAGAATATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACATTCACCAGTCTTTCACAATACATGTTGGTTCTTTAGAATATAA  533

seq1  ACTGTAATAGTGTTTACATCAAAACTTTTTTTTAAGATTTATCTATTTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAATAGTGTTTACATCAAAACTTTTTTTTAAGATTTATCTATTTCA  583

seq1  TTTATATGAGTACACTGTAACTGTCTTCAGACACACCAGAAGAGTACACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGAGTACACTGTAACTGTCTTCAGACACACCAGAAGAGTACACT  633

seq1  GGATCTCATTAACCATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCATTAACCATGGTTGTGAGCCACTATGTGGTTGCTGGGAATTGA  683

seq1  ACTCAGAAGCTCTGGAAGAGCAAGCAGCCAGTGGCCTTAACAAATGAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGCTCTGGAAGAGCAAGCAGCCAGTGGCCTTAACAAATGAGTC  733

seq1  ATCTCTCCAGCCCATATCAAAACTTTATTTATATATATATATATATATAT  797
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ATCTCTCCAGCCCATATCAAAACTTTATT--TATATATATATATATATAT  781

seq1  ATATATATATATATATATATATTTGGATAAAACAACACACAGGAAGTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATTTGGATAAAACAACACACAGGAAGTTTC  831

seq1  AAGTCTCCTAGGAAAGGAAGGCAACTTCATTTAGAAGTCTTGCTCACTCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTAGGAAAGGAAGGCAACTTCATTTAGAAGTCTTGCTCACTCG  881

seq1  AAGATATGGGTACAGGGTAAAAATTCCTGAATAGAACAGCAATGGCTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGGGTACAGGGTAAAAATTCCTGAATAGAACAGCAATGGCTTGT  931

seq1  GCAGTGAGATTGAGAATCGATAAATGGGACCTCATAAAGTTGAAAGCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGATTGAGAATCGATAAATGGGACCTCATAAAGTTGAAAGCTTC  981

seq1  TGCAAGGCAAAAGACACTGTGAACAAGACAAAAAGACCACCAACAGATTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAAAAGACACTGTGAACAAGACAAAAAGACCACCAACAGATTG  1031

seq1  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATA  1081

seq1  TATAAAGAACTCAAGAAGGTGGGCTCCAGAAAATCAAATAACCCCATTAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAACTCAAGAAGGTGGGCTCCAGAAAATCAAATAACCCCATTAA  1131

seq1  AAAATGGGGCTCAGAGCTGAACAAAGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  AAAATGGGGCTCAGAGCTGAACAAAGAATTC  1162

seq1: chr8_45771773_45772942
seq2: B6Ng01-121D09.g_69_1229

seq1  GAATTCAGCCCCTCTGATAAGGCTCTTCACTGTATCTGTTTTGAAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCCTCTGATAAGGCTCTTCACTGTATCTGTTTTGAAGAGGC  50

seq1  CCCTACTCCTCCTTAGAAATTAACCTATCTTTACCTATAAGTTGCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCCTCCTTAGAAATTAACCTATCTTTACCTATAAGTTGCAACTC  100

seq1  CATCAAAACTCTTCGCTACCTTGAGCTGACAGGACGTGTTATAGCAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAACTCTTCGCTACCTTGAGCTGACAGGACGTGTTATAGCAGTGG  150

seq1  GTATGAAAGCTTAGTCCGAGCTGCCCTCTAGAACAGTGGTTCTCAAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAAGCTTAGTCCGAGCTGCCCTCTAGAACAGTGGTTCTCAAACCT  200

seq1  TTGAGTCATGACCACTCCCCCCACCCCCTTGGCAAACCTCTAGCTCCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCATGACCACTCCCCCCACCCCCTTGGCAAACCTCTAGCTCCTAA  250

seq1  AATATTTACATTGCAATTCACAGCAGCAGCAAGATTTACAGTCATGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACATTGCAATTCACAGCAGCAGCAAGATTTACAGTCATGAAGT  300

seq1  AGCAACGAAAATAAATGTATGGTTGGGGATCACCACAACATGAGGGACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACGAAAATAAATGTATGGTTGGGGATCACCACAACATGAGGGACGG  350

seq1  TGTTGAAGGGTCGCAGCTTCAGGAAGGTTAATACTAGGACTGCACTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGGGTCGCAGCTTCAGGAAGGTTAATACTAGGACTGCACTAGGA  400

seq1  CATGGAGGAGACCGGAAATGGCTTAGACAGAGGAGCCTCTACCACTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGGAGACCGGAAATGGCTTAGACAGAGGAGCCTCTACCACTGCAG  450

seq1  AGCTGAAATTCTCTTTTTCTGCTGTAAGTCTCATTTGGGTTCCAGGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAATTCTCTTTTTCTGCTGTAAGTCTCATTTGGGTTCCAGGTACT  500

seq1  CACTGAGCCTAGCTTTTTCTGCCCTGACCCTGCTTTTCTCTTTGGACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCTAGCTTTTTCTGCCCTGACCCTGCTTTTCTCTTTGGACATT  550

seq1  GTCACATCCTGTCCCGCAGCCAAGAAGAGGGCGCCACCCTCCCCTGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCCTGTCCCGCAGCCAAGAAGAGGGCGCCACCCTCCCCTGTTGA  600

seq1  GATCTCTTCTCTCTTATTCCCACTGTTTGCCTCATTCAGGCCGGCCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTCTCTCTTATTCCCACTGTTTGCCTCATTCAGGCCGGCCTGGA  650

seq1  GATGTTGTGTGCCCCTACCCAGGTCACTGGGAACACAGTAACTCGTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTGTGCCCCTACCCAGGTCACTGGGAACACAGTAACTCGTAGAA  700

seq1  ATTAGTCTAGAATTCAGAGGAAGGGATAATTAGAACGCTCTTTCCAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTAGTCTAGAATTCAGAGGAAGGGATAATTAGAACGCTCTTTCCCACCA  750

seq1  CGTACGCTCTTAGTGTCACGTGGTTCACTCCAAGTGAGTTGCTGTCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACGCTCTTAGTGTCACGTGGTTCACTCCAAGTGAGTTGCTGTCCACC  800

seq1  TCTCTGAGAAGGACCCCGCCTCCTTGTGCAACCACAGGAGGTGCTGTGGT  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGAAAGACCCCGCCTCCTTGTGCAACCACAGGAGGTGCTGTGGT  850

seq1  TCAGTTACC-GGTCACT-CCCTGGGTGCTCAGGTACTGTGGTCCTGAGTT  898
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TCAGTTACCGGGTCACTCCCCTGGGTGCTCAGGTACTGTGGTCCTGAGTT  900

seq1  TAGGGAAAGGCTTTAAAA-TGCTAGCTGCTCCAGCTATTGTCCAGAAAGC  947
      |||||||||||||||||| ||||||||||||||||||||| | |||||||
seq2  TAGGGAAAGGCTTTAAAATTGCTAGCTGCTCCAGCTATTGCCAAGAAAGC  950

seq1  T-CACTGCATGAGTCAATATTTACTCTGTCCTCATCCAGACGTGGCCATA  996
      | ||||||||||||||   |||||||||| ||||||||||||||||||||
seq2  TCCACTGCATGAGTCATATTTTACTCTGT-CTCATCCAGACGTGGCCATA  999

seq1  GGCCCA-AGTAAATAAAGAACAAGACGATTTAATGAGAAAAGTTTTCAGG  1045
      |||||| ||| |||||||||| ||||||||| |||| |||||||||||||
seq2  GGCCCATAGTTAATAAAGAAC-AGACGATTT-ATGA-AAAAGTTTTCAGG  1046

seq1  AGCTAAAACACCCCACAACTTAGGGAGAAAAATCGCACATATCCATATCT  1095
      |||||||| ||||||| ||||| ||| ||||||||| ||| | |||||||
seq2  AGCTAAAA-ACCCCAC-ACTTAAGGAAAAAAATCGCCCAT-TTCATATCT  1093

seq1  AGT--GAAAATAGAACCGTGGGGAAAGCCCAGTTCGAAAAAGCTTTCTTA  1143
      |||   ||| ||||  ||||||||||| |||||||   ||||||||| ||
seq2  AGTTGTAAATTAGA--CGTGGGGAAAG-CCAGTTC-CGAAAGCTTTC-TA  1138

seq1  GATTTGTAACTTCCGTTATTCCCGAAT  1170
      ||  ||| || |||||||   ||||||
seq2  GA--TGTGACCTCCGTTA--ACCGAAT  1161