BAC Information

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BAC

Clone NameB6Ng01-121N04
Chromosome8 (Build37)
Map Location 100,905,525 - 100,906,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N04.bB6Ng01-121N04.g
ACCDH925408DH925409
length1,1441,135
definitionDH925408|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N04, 5' end.DH925409|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
tagggttttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctccgtttcttca
tggaggcactcagagctatgattttcctctagaaatgctttcatgtgtcc
caaagtttgggtacgttgtgcttcatttcataaactctaaaaggctttaa
ttctttctttatcttcctgacaagtatcattgaagaagaatgttgtcagt
tcacgtgaagtgtgtgccttctgtatttttgtatgaaaaacata
gaattcactagaaaagccagtaagaaactcaaatttaaggttatgtcatc
tattaatttcgtttaatacaacagtgaaatgttatatttcaaatattgtc
atctcttgcatggtttaacctagttcctatactttattaccttcccaagc
tacatcttttcctgaactaaaatactggaggtcatggcgcacataggcaa
ccctcccctctggaagggcaaggctgattacattcctcagaaaaaccttg
aggtggactgacctttggccacacgcagttatgggaagcccctacaactt
cattctctaactgctaatcatattgtgcctagctgctgatgctctattcc
acccctgaaaactgtataaaaactcaccaaatgggccaccaggggtcact
gcttctccttcaggagcagcatgagcccatctcgctgaaacaataaattc
tcttttttgcattgattcctggctctgcatggttcactcagggtgtcccc
aggaatggaggcttgtcagagtcttacaatactaaatgcctaaatatttg
ctccaactcagagatatctctgtaagcagatacagcactttactagtggg
gaagtaatttgttgactgggaatattgatgcaaatcttaatttatattat
atttatcacttaataaaattatttagaagagtgtacttctgaagaactta
attcaagtagccaggtaggatcctcagtgaaggataagtacaccaaccca
cccacaaacttttgattcaatctttgttctgtctagggagatatagggac
aaagagtagaagctaaaggaatgaatgaccaagcaacaactagcccaatc
aagatctatcccgggggtaaacagtaatacctcccactattgatgatacg
ctgttatgcttgagacaggatcctaacataactgtcctctgagaggctct
acctagcaatggctgaaacagacccagatacccacagctaacattggaga
cagttggggattactctgagagttaggttagtgtgaagctctgaagggat
agaagtcacagtgatcaacagtcactatcctggatactggatcttcagtt
atgacctccaaccaaagaacatacatggcctggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_100905525_100906681
seq2: B6Ng01-121N04.g_68_1202

seq1  GAATTCACTAGAAAAGCCAGTAAGAAACTCAAATTTAAGGTTATGTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGAAAAGCCAGTAAGAAACTCAAATTTAAGGTTATGTCATC  50

seq1  TATTAATTTCGTTTAATACAACAGTGAAATGTTATATTTCAAATATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCGTTTAATACAACAGTGAAATGTTATATTTCAAATATTGTC  100

seq1  ATCTCTTGCATGGTTTAACCTAGTTCCTATACTTTATTACCTTCCCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGCATGGTTTAACCTAGTTCCTATACTTTATTACCTTCCCAAGC  150

seq1  TACATCTTTTCCTGAACTAAAATACTGGAGGTCATGGCGCACATAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTTCCTGAACTAAAATACTGGAGGTCATGGCGCACATAGGCAA  200

seq1  CCCTCCCCTCTGGAAGGGCAAGGCTGATTACATTCCTCAGAAAAACCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCTGGAAGGGCAAGGCTGATTACATTCCTCAGAAAAACCTTG  250

seq1  AGGTGGACTGACCTTTGGCCACACGCAGTTATGGGAAGCCCCTACAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGACTGACCTTTGGCCACACGCAGTTATGGGAAGCCCCTACAACTT  300

seq1  CATTCTCTAACTGCTAATCATATTGTGCCTAGCTGCTGATGCTCTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTAACTGCTAATCATATTGTGCCTAGCTGCTGATGCTCTATTCC  350

seq1  ACCCCTGAAAACTGTATAAAAACTCACCAAATGGGCCACCAGGGGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAAAACTGTATAAAAACTCACCAAATGGGCCACCAGGGGTCACT  400

seq1  GCTTCTCCTTCAGGAGCAGCATGAGCCCATCTCGCTGAAACAATAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTTCAGGAGCAGCATGAGCCCATCTCGCTGAAACAATAAATTC  450

seq1  TCTTTTTTGCATTGATTCCTGGCTCTGCATGGTTCACTCAGGGTGTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGCATTGATTCCTGGCTCTGCATGGTTCACTCAGGGTGTCCCC  500

seq1  AGGAATGGAGGCTTGTCAGAGTCTTACAATACTAAATGCCTAAATATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGGCTTGTCAGAGTCTTACAATACTAAATGCCTAAATATTTG  550

seq1  CTCCAACTCAGAGATATCTCTGTAAGCAGATACAGCACTTTACTAGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTCAGAGATATCTCTGTAAGCAGATACAGCACTTTACTAGTGGG  600

seq1  GAAGTAATTTGTTGACTGGGAATATTGATGCAAATCTTAATTTATATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATTTGTTGACTGGGAATATTGATGCAAATCTTAATTTATATTAT  650

seq1  ATTTATCACTTAATAAAATTATTTAGAAGAGTGTACTTCTGAAGAACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCACTTAATAAAATTATTTAGAAGAGTGTACTTCTGAAGAACTTA  700

seq1  ATTCAAGTAGCCAGGTAGGATCCTCAGTGAAGGATAAGTACACCAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTAGCCAGGTAGGATCCTCAGTGAAGGATAAGTACACCAACCCA  750

seq1  CCCACAAACTTTTGATTCAATCTTTGTTCTGTCTAGGGAGATATAGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAACTTTTGATTCAATCTTTGTTCTGTCTAGGGAGATATAGGGAC  800

seq1  AAAGAGTAGAAGCTAAAGGAATGAATGACCAAGCAACAACTAGCCCAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAGAAGCTAAAGGAATGAATGACCAAGCAACAACTAGCCCAATC  850

seq1  AAGATCTATCCCGGGGGTAAACAGTAATACCTCCCACTATTGATGATACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTATCCCGGGGGTAAACAGTAATACCTCCCACTATTGATGATACG  900

seq1  CTGTTATGCTTGAAGACAGGATCCTAACATAACTGTCCTCTGAGAGGCTC  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGCTTG-AGACAGGATCCTAACATAACTGTCCTCTGAGAGGCTC  949

seq1  TACCTAGCAATTGGCTGAAACAGACCCAGATACCCACAGCCAAACATTGG  1000
      |||||||||| |||||||||||||||||||||||||||| | ||||||||
seq2  TACCTAGCAA-TGGCTGAAACAGACCCAGATACCCACAG-CTAACATTGG  997

seq1  AGAACAGTTGGGGATTACTCTGGAAGAGTTAGGGTAAGTGTGGAAGGCTC  1050
      || |||||||||||||||||||  ||||||| ||| ||||||  | ||||
seq2  AG-ACAGTTGGGGATTACTCTG--AGAGTTA-GGTTAGTGTG--AAGCTC  1041

seq1  TGAAGGGGATAGAAAGTCCACAGGTTGATCAACAGGGTCAACTATCTTGG  1100
      |||| ||||||| |||| |||||  |||||||||  ||| |||||| |||
seq2  TGAA-GGGATAG-AAGT-CACAG--TGATCAACA--GTC-ACTATCCTGG  1083

seq1  ATACCTGGGATCTTTCAGTGAATGAACCTCCAACCAAAGAACATACATGG  1150
      ||||   ||||| ||||||  ||| |||||||||||||||||||||||||
seq2  ATAC--TGGATC-TTCAGT-TATG-ACCTCCAACCAAAGAACATACATGG  1128

seq1  GCTGGAC  1157
       ||||||
seq2  CCTGGAC  1135