BAC Information

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BAC

Clone NameB6Ng01-122D05
Chromosome8 (Build37)
Map Location 78,434,501 - 78,435,560
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneHmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122D05.bB6Ng01-122D05.g
ACCDH925690DH925691
length8811,049
definitionDH925690|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D05, 5' end.DH925691|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatagatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactccagcaagcacttcttga
ttgacatcagcaatagtgtctgggtttggtgtctgcatggtgagtgcagg
tggggcagtctctggatggcctttccttcagtctctgctctactttttgt
ccctatatttattttaaacaggagcaattctaggttaaaattttggagat
cgatgggtggccccattcctcaactggggctggggggtggggtgggcatg
cctaacctctgtatatggcctcgacagttttctcacttccctttgtggag
tattttgggctaacatcatccctgtggggtcctgggaggttcttgttttt
cctggaatctggaactttctggttgctaaccccagttccccatcctccat
tgctacacacctctatttaatttctgaccctctgtacatcttctccccca
tacctgattcttccctcttttcccttccctc
gaattccagatttatggagcaagggagaaaaatcctctgccttctatttc
atgaggggaatttgttgctttatgattgaaacatatagtgtcccccaaag
tctcatgtgttaaagtcttaatgcccagctgatggcaccactaaaaggag
actgaatcattgatgtgctaatttgatgtctagatgagtctaatgatgag
ctcatagatgagttgagtatcaggaggagggcctaatgacaagtcagttc
atgactgtgtttttggtggatgcagactgtatattctcttttagaactct
tatttttgcactgatgctttgcaaaatttgtctagttgaaaatgtctcta
gtttgcatgatttctaagatgtcagtcatatgtgaaagaaatatatatac
tagttagaatgccactgtgccacatcttcatggcatttataagtcatgca
tgcataggacaaacgaacaatttgagtttcaagattacctttaaaaatta
cattgtagtctttggggtgacgaaagttaaactacaactacctgttcatg
actttatgtaattgataatactactatacataaaatcaaaaacaaaaaaa
atctgctggaaattcggtgtggaatcttatgccagacttaattcttaaac
agtagaatcaattttctactgtgcaattatttgtgtcagtattaatcaca
tgatcacttcagatattgtgcttatacttttaggagaccatcaaaaatta
atttaaatatgtatagtaaaacagcagaaatataagatggaacattaatt
ggttactctgatttttagttatgagatttacaaatggcagaatattttct
caagtttcaagccaatcagcaatggtcaccttatatctattcataaattt
ttaccacaaacaggaaaatataaaggagccaatgggtaggtttcccatgt
tttgtggatgtgccatacttaggcatacagagcagcacgagccgacttag
tgatgatcagagaaatatgaagttgggaggatcatgttatagggatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78434501_78435560
seq2: B6Ng01-122D05.g_67_1115 (reverse)

seq1  CATATCCCCTATAACATGATCCTCCCAACTTCATTATTTTCTCTTGATCA  50
      ||||| ||||||||||||||||||||||||||||   |||||| ||||||
seq2  CATAT-CCCTATAACATGATCCTCCCAACTTCAT--ATTTCTC-TGATCA  46

seq1  TTCACTAAGTCCGGCTCGTGCTGCTCTTGTATGCCTAAGTATGGCACCAT  100
       ||||||||| ||||||||||||||| ||||||||||||||||||| |||
seq2  -TCACTAAGT-CGGCTCGTGCTGCTC-TGTATGCCTAAGTATGGCA-CAT  92

seq1  CCAACAAAACATGGGAAACCTACCCATTGGCTTCCTTTATATTTTCCTGT  150
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CC-ACAAAACATGGGAAACCTACCCATTGGC-TCCTTTATATTTTCCTGT  140

seq1  TTGTGGTAAAAATTTATGAATAGATATAAGGTGACCATTGCTGATTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTAAAAATTTATGAATAGATATAAGGTGACCATTGCTGATTGGCT  190

seq1  TGAAACTTGAGAAAATATTCTGCCATTTGTAAATCTCATAAACTAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAAACTTGAGAAAATATTCTGCCATTTGTAAATCTCAT-AACTAAAAAT  239

seq1  CAGAGTAACCAATTAATGTTCCATCTTATATTTCTGCTGTTTTACTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAACCAATTAATGTTCCATCTTATATTTCTGCTGTTTTACTATAC  289

seq1  ATATTTAAATTAATTTTTGATGGTCTCCTAAAAGTATAAGCACAATATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATTAATTTTTGATGGTCTCCTAAAAGTATAAGCACAATATCT  339

seq1  GAAGTGATCATGTGATTAATACTGACACAAATAATTGCACAGTAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATCATGTGATTAATACTGACACAAATAATTGCACAGTAGAAAAT  389

seq1  TGATTCTACTGTTTAAGAATTAAGTCTGGCATAAGATTCCACACCGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTACTGTTTAAGAATTAAGTCTGGCATAAGATTCCACACCGAATT  439

seq1  TCCAGCAGATTTTTTTTGTTTTTGATTTTATGTATAGTAGTATTATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGATTTTTTTTGTTTTTGATTTTATGTATAGTAGTATTATCAAT  489

seq1  TACATAAAGTCATGAACAGGTAGTTGTAGTTTAACTTTCGTCACCCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAGTCATGAACAGGTAGTTGTAGTTTAACTTTCGTCACCCCAAA  539

seq1  GACTACAATGTAATTTTTAAAGGTAATCTTGAAACTCAAATTGTTCGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAATGTAATTTTTAAAGGTAATCTTGAAACTCAAATTGTTCGTTT  589

seq1  GTCCTATGCATGCATGACTTATAAATGCCATGAAGATGTGGCACAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATGCATGCATGACTTATAAATGCCATGAAGATGTGGCACAGTGGC  639

seq1  ATTCTAACTAGTATATATATTTCTTTCACATATGACTGACATCTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACTAGTATATATATTTCTTTCACATATGACTGACATCTTAGAAA  689

seq1  TCATGCAAACTAGAGACATTTTCAACTAGACAAATTTTGCAAAGCATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAAACTAGAGACATTTTCAACTAGACAAATTTTGCAAAGCATCAG  739

seq1  TGCAAAAATAAGAGTTCTAAAAGAGAATATACAGTCTGCATCCACCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAATAAGAGTTCTAAAAGAGAATATACAGTCTGCATCCACCAAAA  789

seq1  ACACAGTCATGAACTGACTTGTCATTAGGCCCTCCTCCTGATACTCAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTCATGAACTGACTTGTCATTAGGCCCTCCTCCTGATACTCAACT  839

seq1  CATCTATGAGCTCATCATTAGACTCATCTAGACATCAAATTAGCACATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGAGCTCATCATTAGACTCATCTAGACATCAAATTAGCACATCA  889

seq1  ATGATTCAGTCTCCTTTTAGTGGTGCCATCAGCTGGGCATTAAGACTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCAGTCTCCTTTTAGTGGTGCCATCAGCTGGGCATTAAGACTTTA  939

seq1  ACACATGAGACTTTGGGGGACACTATATGTTTCAATCATAAAGCAACAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAGACTTTGGGGGACACTATATGTTTCAATCATAAAGCAACAAA  989

seq1  TTCCCCTCATGAAATAGAAGGCAGAGGATTTTTCTCCCTTGCTCCATAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCATGAAATAGAAGGCAGAGGATTTTTCTCCCTTGCTCCATAAA  1039

seq1  TCTGGAATTC  1060
      ||||||||||
seq2  TCTGGAATTC  1049