BAC Information

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BAC

Clone NameB6Ng01-122E22
Chromosome8 (Build37)
Map Location 22,232,126 - 22,361,514
singlet/doubletdoublet
Overlap geneLOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605
Downstream geneLOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122E22.bB6Ng01-122E22.g
ACCDH925766DH925767
length4571,124
definitionDH925766|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E22, 5' end.DH925767|Mus musculus domesticus DNA, BAC clone: B6Ng01-122E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,232,126 - 22,232,588)(22,360,386 - 22,361,514)
sequence
tcccttaagaaatgttgatgtaaattaactcaaaggtatatttggagata
tttttttttcctatgacctggtttgggcgatttgtgggagggaggttgag
acagggtttctctgtgtagccttgactatcctggaactcactttgtagac
agagaaaactggcctcaaacttagagcatccagtgcaccattgttggtat
taagggagtgtgccaacactaccagacatgacattttttctttaacctta
gtattcttttgcttgtgtattacattttacaatgttgtgggctttttggg
ttttgttgtatatgtgtatctctgcatgggtatgagtgtcttttgccctt
aattgttcttgttgtttgtttcattattgtttattttgtgagagagagag
agagaaggagagagagagagagagagaagacataggattggaatggtgag
gagggtt
gaattccttgatctcgttttgttgtctaattgctgtggctagaatttcaa
gtactatattgaataggtagggagaaagtgggcagccttgtctagccttg
catgaaatgtaagctgttgagacccaggggtgtttgcacattttgctcag
ctgctcccatgtattttcacatcaaaaaaactttccgcatgatactctga
ttaagagtccagagcgttccaggaaaggagggcaagctccacagagaagt
ggacagataccctgcactgaccatcaggtggcatggctgtgctaaaggtt
tgtctttttacagagagtcttcagaggactcagtccagtagggttgggca
acaggctccagtctactgagctctaaatattactacacttgttccaatgc
ccgcattccaagaaaagcaaaaaagaccttgtaaaagaggctgggatcta
cgcattaatagatcttttgcacatcagtgagaatttgagctcatcaaagc
caccacaaccctttgttagcactttggaatttggaagacttggaaatctc
ttctgctattactagagttaaactaggaccttaaagtgtcttaagggggt
gaggaattaacatagaagcatcctcatatatgcctgttgaatttggtgcg
tggttgctaagaactggaagcttagggtttccaggtccctctgcaggcca
ctatgtttggttcaggtttcaggcacctgtacgggtggcatgagctggta
tagtgactgaggatactctctctgggtcttgatcactcttgctgtatctc
tgtgtcacaggatatctggtcatataagtaacataagtcaaattttctaa
cagctcatcatcagttgaagaaaggtagataaaggtatcttaagtaccta
cacgtagatctctgaagatatatctgaatacctgagaacatgtatgtgtt
tgtgtgtgtgtgtgtgttaagtcacacttctatatatcaaatccagcttc
cacaaaatgtacagatacttccacatgttgtatattacctgggtgaaact
tcttgctttgcttccttgtcttaaagaccttgaatgttctgatagaacac
caaggaaactcctctcaatgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_22232126_22232588
seq2: B6Ng01-122E22.b_49_511

seq1  GAATTCTCCCTTAAGAAATGTTGATGTAAATTAACTCAAAGGTATATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTAAGAAATGTTGATGTAAATTAACTCAAAGGTATATTTG  50

seq1  GAGATATTTTTTTTTCCTATGACCTGGTTTGGGCGATTTGTGGGAGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTTTTTTTTCCTATGACCTGGTTTGGGCGATTTGTGGGAGGGAG  100

seq1  GTTGAGACAGGGTTTCTCTGTGTAGCCTTGACTATCCTGGAACTCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGACAGGGTTTCTCTGTGTAGCCTTGACTATCCTGGAACTCACTTT  150

seq1  GTAGACAGAGAAAACTGGCCTCAAACTTAGAGCATCCAGTGCACCATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGAGAAAACTGGCCTCAAACTTAGAGCATCCAGTGCACCATTGT  200

seq1  TGGTATTAAGGGAGTGTGCCAACACTACCAGACATGACATTTTTTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTAAGGGAGTGTGCCAACACTACCAGACATGACATTTTTTCTTTA  250

seq1  ACCTTAGTATTCTTTTGCTTGTGTATTACATTTTACAATGTTGTGGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTATTCTTTTGCTTGTGTATTACATTTTACAATGTTGTGGGCTT  300

seq1  TTTGGGTTTTGTTGTATATGTGTATCTCTGCATGGGTATGAGTGTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTTGTTGTATATGTGTATCTCTGCATGGGTATGAGTGTCTTTT  350

seq1  GCCCTTAATTGTTCTTGTTGTTTGTTTCATTATTGTTTATTTTGTGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAATTGTTCTTGTTGTTTGTTTCATTATTGTTTATTTTGTGAGAG  400

seq1  AGAGAGAGAGAAGGAGAGAGAGAGAGAGAGAGAAGACATAGGATTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAGGAGAGAGAGAGAGAGAGAGAAGACATAGGATTGGAAT  450

seq1  GGTGAGGAGGGTT  463
      |||||||||||||
seq2  GGTGAGGAGGGTT  463

seq1: chr8_22360386_22361514
seq2: B6Ng01-122E22.g_65_1188 (reverse)

seq1  GCAACATTTGAGAGAGAGTTTCCTTGGTGTGTCTATTCAGAACAGTCAAA  50
      |||||| ||||||| ||||||||||||||| |||| |||||||| |||| 
seq2  GCAACA-TTGAGAG-GAGTTTCCTTGGTGT-TCTA-TCAGAACATTCAAG  46

seq1  GTCTCTAAGACAA-GAAGCAAAGCAGGAAGTCTCACCCAGGT-ATATACA  98
      |||| |||||||| ||||||||||| ||||| |||||||||| |||||||
seq2  GTCTTTAAGACAAGGAAGCAAAGCAAGAAGTTTCACCCAGGTAATATACA  96

seq1  ACATGT-GAAGTATCTGTACATATTTGTGGAAGCTGGATTTGATATATAG  147
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  ACATGTGGAAGTATCTGTACAT-TTTGTGGAAGCTGGATTTGATATATAG  145

seq1  AGGTGTGACTTTAAACACACACACACACACAAACACATACCATGTTCTCA  197
      | |||||||||  |||||||||||||||||||||||||| ||||||||||
seq2  AAGTGTGACTT--AACACACACACACACACAAACACATA-CATGTTCTCA  192

seq1  GGTATTCAGATATATCTTCAGAGATCTACGTGTAGGTACCTTAAGATACC  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTATTCAGATATATCTTCAGAGATCTACGTGTAGGTA-CTTAAGATACC  241

seq1  TTTATCTACCTTTC-TCAACTGATGATGAGCTGTTAGAAAATGTGACTTA  296
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TTTATCTACCTTTCTTCAACTGATGATGAGCTGTTAGAAAATTTGACTTA  291

seq1  TGTTACTTATATGACCAGATATCCTGTGACACAGAGATACAGCAAGAGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTATATGACCAGATATCCTGTGACACAGAGATACAGCAAGAGTG  341

seq1  ATCAAGACCCAGAGAGAGTATCCTCAGTCACTATACCAGCTCATGCCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACCCAGAGAGAGTATCCTCAGTCACTATACCAGCTCATGCCACC  391

seq1  CGTACAGGTGCCTGAAACCTGAACCAAACATAGTGGCCTGCAGAGGGACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACAGGTGCCTGAAACCTGAACCAAACATAGTGGCCTGCAGAGGGACC  441

seq1  TGGAAACCCTAAGCTTCCAGTTCTTAGCAACCACGCACCAAATTCAACAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCCTAAGCTTCCAGTTCTTAGCAACCACGCACCAAATTCAACAG  491

seq1  GCATATATGAGGATGCTTCTATGTTAATTCCTCACCCCCTTAAGACACTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATGAGGATGCTTCTATGTTAATTCCTCACCCCCTTAAGACACTT  541

seq1  TAAGGTCCTAGTTTAACTCTAGTAATAGCAGAAGAGATTTCCAAGTCTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCCTAGTTTAACTCTAGTAATAGCAGAAGAGATTTCCAAGTCTTC  591

seq1  CAAATTCCAAAGTGCTAACAAAGGGTTGTGGTGGCTTTGATGAGCTCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCAAAGTGCTAACAAAGGGTTGTGGTGGCTTTGATGAGCTCAAA  641

seq1  TTCTCACTGATGTGCAAAAGATCTATTAATGCGTAGATCCCAGCCTCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGATGTGCAAAAGATCTATTAATGCGTAGATCCCAGCCTCTTT  691

seq1  TACAAGGTCTTTTTTGCTTTTCTTGGAATGCGGGCATTGGAACAAGTGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTCTTTTTTGCTTTTCTTGGAATGCGGGCATTGGAACAAGTGTA  741

seq1  GTAATATTTAGAGCTCAGTAGACTGGAGCCTGTTGCCCAACCCTACTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTAGAGCTCAGTAGACTGGAGCCTGTTGCCCAACCCTACTGGA  791

seq1  CTGAGTCCTCTGAAGACTCTCTGTAAAAAGACAAACCTTTAGCACAGCCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCTCTGAAGACTCTCTGTAAAAAGACAAACCTTTAGCACAGCCA  841

seq1  TGCCACCTGATGGTCAGTGCAGGGTATCTGTCCACTTCTCTGTGGAGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGATGGTCAGTGCAGGGTATCTGTCCACTTCTCTGTGGAGCTT  891

seq1  GCCCTCCTTTCCTGGAACGCTCTGGACTCTTAATCAGAGTATCATGCGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCTTTCCTGGAACGCTCTGGACTCTTAATCAGAGTATCATGCGGA  941

seq1  AAGTTTTTTTGATGTGAAAATACATGGGAGCAGCTGAGCAAAATGTGCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTGATGTGAAAATACATGGGAGCAGCTGAGCAAAATGTGCAA  991

seq1  ACACCCCTGGGTCTCAACAGCTTACATTTCATGCAAGGCTAGACAAGGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTGGGTCTCAACAGCTTACATTTCATGCAAGGCTAGACAAGGCT  1041

seq1  GCCCACTTTCTCCCTACCTATTCAATATAGTACTTGAAATTCTAGCCACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTTTCTCCCTACCTATTCAATATAGTACTTGAAATTCTAGCCACA  1091

seq1  GCAATTAGACAACAAAACGAGATCAAGGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  GCAATTAGACAACAAAACGAGATCAAGGAATTC  1124