BAC Information

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BAC

Clone NameB6Ng01-122F02
Chromosome8 (Build37)
Map Location 114,048,409 - 114,212,924
singlet/doubletdoublet
Overlap geneZnrf1, Ldhd, Zfp1, Ctrb1
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
Downstream geneBcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122F02.bB6Ng01-122F02.g
ACCDH925774DH925775
length979302
definitionDH925774|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F02, 5' end.DH925775|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,211,946 - 114,212,924)(114,048,409 - 114,048,710)
sequence
gaattctctttcttatttttgttattttggtttttggtttttggttttcc
aagacagggtttctctgtacagccttggctatcctggaactcactctgta
gactaggttagccttgaactcagaaatctgcccgcctctgcctcccgagt
gcaggattaaaggcgtgcgccaccacgggctcttctcgatctcttctgat
ggggccaaaagggaagaagcttgtcccctggaacccagcagagcccaggt
gtcccctccccgcgcccccaacgcttagttgagcttcttgtccccacagg
tttttaagaaccccaagttcaactccttcaccgtgcgtaatgacatcacc
ctgctgaagctggccactcctgcccagttctctgagactgtgtctgccgt
gtgtctgcccactgttgacgatgacttccctgctgggacactgtgtgcca
ccactggctggggcaagaccaaatacaatggtgagtgtggccttgcccag
cggaagctgttcttgggtcatgctgcccaggccgcaggctcttccagttg
tgactcccgctgtctgtctgtctgtctgtcttccttcttttttaaaaaaa
caattgaaattaatttattttattttgtttatatgaacaaaccgttgctg
tcttcagacacaccagaagagggcgtcagatcccattacagatggtttgt
gaaccaccatgtggttgctgggaattgaactcaggacctctggaagagca
gtcagtgctcttaaccaatgagccaccttctccagctcttcctttcttct
cctcctttttttctttctttctctctctctctctctctccttcctccctc
tctctttttttcttctttcttttcttccattctcctttatttgaatctaa
atcccaataataatacgtctttccatttcttttcttttctctttctcctc
ctcccgctttttttgttctgttttttttt
tttctgcagcactatgctgctgtttaattcaataattatttacttaattt
aatatctccaagcctcagacaggcccctggtctgttttgttggaatctgc
ttggcccagcatatgcaggctactccgtgaacatctgccctgaatggatg
caacctgcagtgctcatgatccacagacctttctaagtcagaggggtacc
ttctgtgcaaccaaaagtaacgtaagactattcaaatgctttgtgtctga
gtctttttaaaaagattttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_114211946_114212924
seq2: B6Ng01-122F02.b_48_1026 (reverse)

seq1  AAAAAAAAA------AAAAAAAGAGAGAGAGAGAGAGAAAGAAAGAAAAG  44
      |||||||||      |||||||| | ||| ||| |||||||  |||||||
seq2  AAAAAAAAACAGAACAAAAAAAGCGGGAG-GAG-GAGAAAG--AGAAAAG  46

seq1  AAAAGAAATGGAAAGACGTATTATTATTGGAATTTAGATCAAAATAAAGG  94
      |||||||||||||||||||||||||||||| ||||||||  |||||||||
seq2  AAAAGAAATGGAAAGACGTATTATTATTGGGATTTAGATTCAAATAAAGG  96

seq1  AAGAATGGAAAGAAAGAAAGAAAGAAAAAAAGAGAGAGGGAGGGAGGGAG  144
       |||||||||  |||||||| |||||||||||||||||||| ||| ||||
seq2  -AGAATGGAAGAAAAGAAAG-AAGAAAAAAAGAGAGAGGGA-GGAAGGAG  143

seq1  AGAGAGAGAGAGAGAGAAAGAAAGAAAAAAAGAAGAGAAAGAAAAGGAAG  194
      |||||||||||||||||||||||||||||||| || || |  ||||||||
seq2  AGAGAGAGAGAGAGAGAAAGAAAGAAAAAAAGGAG-GAGAAGAAAGGAAG  192

seq1  AGCTGGAG-AGGTGGCTCATTGGTTAAGAGCACTGACTGCTCTTCCAGAG  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAAGGTGGCTCATTGGTTAAGAGCACTGACTGCTCTTCCAGAG  242

seq1  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTCAC-AACCATCTGT  292
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTCACAAACCATCTGT  292

seq1  AATGGGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCAACGGTTTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCAACGGTTTG  342

seq1  TTCATATAAACAAAATAAAATAAATTAATTTCAATTGTTTTTTTAAAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAAACAAAATAAAATAAATTAATTTCAATTGTTTTTTTAAAAAA  392

seq1  GAAGGAAGACAGACAGACAGACAGACAGCGGGAGTCACAACTGGAAGAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGACAGACAGACAGACAGACAGCGGGAGTCACAACTGGAAGAGC  442

seq1  CTGCGGCCTGGGCAGCATGACCCAAGAACAGCTTCCGCTGGGCAAGGCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCCTGGGCAGCATGACCCAAGAACAGCTTCCGCTGGGCAAGGCCA  492

seq1  CACTCACCATTGTATTTGGTCTTGCCCCAGCCAGTGGTGGCACACAGTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCATTGTATTTGGTCTTGCCCCAGCCAGTGGTGGCACACAGTGT  542

seq1  CCCAGCAGGGAAGTCATCGTCAACAGTGGGCAGACACACGGCAGACACAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGGGAAGTCATCGTCAACAGTGGGCAGACACACGGCAGACACAG  592

seq1  TCTCAGAGAACTGGGCAGGAGTGGCCAGCTTCAGCAGGGTGATGTCATTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAACTGGGCAGGAGTGGCCAGCTTCAGCAGGGTGATGTCATTA  642

seq1  CGCACGGTGAAGGAGTTGAACTTGGGGTTCTTAAAAACCTGTGGGGACAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACGGTGAAGGAGTTGAACTTGGGGTTCTTAAAAACCTGTGGGGACAA  692

seq1  GAAGCTCAACTAAGCGTTGGGGGCGCGGGGAGGGGACACCTGGGCTCTGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAACTAAGCGTTGGGGGCGCGGGGAGGGGACACCTGGGCTCTGC  742

seq1  TGGGTTCCAGGGGACAAGCTTCTTCCCTTTTGGCCCCATCAGAAGAGATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCAGGGGACAAGCTTCTTCCCTTTTGGCCCCATCAGAAGAGATC  792

seq1  GAGAAGAGCCCGTGGTGGCGCACGCCTTTAATCCTGCACTCGGGAGGCAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGCCCGTGGTGGCGCACGCCTTTAATCCTGCACTCGGGAGGCAG  842

seq1  AGGCGGGCAGATTTCTGAGTTCAAGGCTAACCTAGTCTACAGAGTGAGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGCAGATTTCTGAGTTCAAGGCTAACCTAGTCTACAGAGTGAGTT  892

seq1  CCAGGATAGCCAAGGCTGTACAGAGAAACCCTGTCTTGGAAAACCAAAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATAGCCAAGGCTGTACAGAGAAACCCTGTCTTGGAAAACCAAAAA  942

seq1  CCAAAAACCAAAATAACAAAAATAAGAAAGAGAATTC  979
      |||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACCAAAATAACAAAAATAAGAAAGAGAATTC  979

seq1: chr8_114048409_114048710
seq2: B6Ng01-122F02.g_75_376

seq1  TTTCTGCAGCACTATGCTGCTGTTTAATTCAATAATTATTTACTTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGCACTATGCTGCTGTTTAATTCAATAATTATTTACTTAATTT  50

seq1  AATATCTCCAAGCCTCAGACAGGCCCCTGGTCTGTTTTGTTGGAATCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCCAAGCCTCAGACAGGCCCCTGGTCTGTTTTGTTGGAATCTGC  100

seq1  TTGGCCCAGCATATGCAGGCTACTCCGTGAACATCTGCCCTGAATGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCAGCATATGCAGGCTACTCCGTGAACATCTGCCCTGAATGGATG  150

seq1  CAACCTGCAGTGCTCATGATCCACAGACCTTTCTAAGTCAGAGGGGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCAGTGCTCATGATCCACAGACCTTTCTAAGTCAGAGGGGTACC  200

seq1  TTCTGTGCAACCAAAAGTAACGTAAGACTATTCAAATGCTTTGTGTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCAACCAAAAGTAACGTAAGACTATTCAAATGCTTTGTGTCTGA  250

seq1  GTCTTTTTAAAAAGATTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTAAAAAGATTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TG  302
      ||
seq2  TG  302