BAC Information

Click to search

BAC

Clone NameB6Ng01-122H09
Chromosome8 (Build37)
Map Location 122,217,345 - 122,371,521
singlet/doubletdoublet
Overlap geneAtp2c2, 4632415K11Rik, Cotl1
Upstream geneCdh13, Hsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1
Downstream geneBC025816, Usp10, Crispld2, Zdhhc7, 6430548M08Rik, 1700120B06Rik, Gse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H09.bB6Ng01-122H09.g
ACCDH925877DH925878
length529945
definitionDH925877|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H09, 5' end.DH925878|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,370,987 - 122,371,521)(122,217,345 - 122,218,287)
sequence
tcttccagaagctgataggtctgtccctgcatcttggctttacccattct
gacctggccccagtggatgagacttagagacaggggggcccagggctctc
tctgtggcttccttctagggccaccccacccccacccccgccgggggatt
ctggtatagactggcatgtagggagggagggaaggaaatcagggcaagca
aatcagtcaagtgtttgctcatggaacacacagtcctggtgcaaactggg
gcttcgctttgtgaggctgctgctgtgtggggtgtagcagggtgggctgg
gcgtgggggtgagcaagtgtggtggtgttggtagtgcatttcccactgcg
cctttttttattttctatactgtcaggatctgtgtctatttctgaaaggc
tcacctttggatttagcaactgttcgtttgcattgatagtttagcttgtt
attttatatatgatttgaatagacaggcggcggcggcggcggtggcggta
cacccctttaatcatctgcacttgggaag
gaattccacagcactgaccttccgggccacaagtaccctctattggctcc
ccctactctgctctctctccccttttcccctctctcccttcctcttgctt
cttccctcctttctctcttctttacctcctacaagcttcagtgtgcatgc
ccaaattctctctcacacaaataactggagtacaataaaagctgggagac
cagattgttgcaagtccattgtcacctacctgtccccatgatgcaccctg
tgacagagggtgaaccattttctgagtccagagccatgcgctgttatttg
gttgagatgcatcttccgtcaccttccttctggaatgttctgcaatctct
tcctgatgcctgctagctatagcttttgacgaaatgagccagtgacttcc
tggaacactttcccttgtgactggagtcccctgctgtataacactgtgag
ggaggtggccactgctatgtcagactcggagcagctgtggtcacccaggc
tcctgagagcctcagcaggtcaggtagaatggtgggggagggcatcagat
cctcagctgaggtcacagccccagctgtaaccctcttggagatgctagag
aagccaggagaagagtgctgactggggacggacactccatctgtgtatca
cccacgctggggtgggattgttggtgacatagctgcctttgagcccccat
gtttctggaaaggattccaatatacttgcttggctcaccacactggacac
tgcttttgcttctttccctcctcctcctcctctttcccctcctccccttc
ttcctcctctttcatctttgtgtgtgtgagtgggatgcatatgttgccag
tgtgtttgtagtcaaagataattactgggtatcactcctcctccttgact
tttgtttgagacagaatcttttgtttacatctgtgcaaagcaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_122370987_122371521
seq2: B6Ng01-122H09.b_49_583 (reverse)

seq1  CTTCCCAAGTGCAGATGATTAAAGGGGTGTACCGCCACCGCCGCCGCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGTGCAGATGATTAAAGGGGTGTACCGCCACCGCCGCCGCCGC  50

seq1  CGCCTGTCTATTCAAATCATATATAAAATAACAAGCTAAACTATCAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGTCTATTCAAATCATATATAAAATAACAAGCTAAACTATCAATGC  100

seq1  AAACGAACAGTTGCTAAATCCAAAGGTGAGCCTTTCAGAAATAGACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAACAGTTGCTAAATCCAAAGGTGAGCCTTTCAGAAATAGACACAG  150

seq1  ATCCTGACAGTATAGAAAATAAAAAAAGGCGCAGTGGGAAATGCACTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACAGTATAGAAAATAAAAAAAGGCGCAGTGGGAAATGCACTACC  200

seq1  AACACCACCACACTTGCTCACCCCCACGCCCAGCCCACCCTGCTACACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACCACACTTGCTCACCCCCACGCCCAGCCCACCCTGCTACACCC  250

seq1  CACACAGCAGCAGCCTCACAAAGCGAAGCCCCAGTTTGCACCAGGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAGCAGCCTCACAAAGCGAAGCCCCAGTTTGCACCAGGACTGT  300

seq1  GTGTTCCATGAGCAAACACTTGACTGATTTGCTTGCCCTGATTTCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCATGAGCAAACACTTGACTGATTTGCTTGCCCTGATTTCCTTCC  350

seq1  CTCCCTCCCTACATGCCAGTCTATACCAGAATCCCCCGGCGGGGGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTACATGCCAGTCTATACCAGAATCCCCCGGCGGGGGTGGGG  400

seq1  GTGGGGTGGCCCTAGAAGGAAGCCACAGAGAGAGCCCTGGGCCCCCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGGCCCTAGAAGGAAGCCACAGAGAGAGCCCTGGGCCCCCCTGT  450

seq1  CTCTAAGTCTCATCCACTGGGGCCAGGTCAGAATGGGTAAAGCCAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTCTCATCCACTGGGGCCAGGTCAGAATGGGTAAAGCCAAGATG  500

seq1  CAGGGACAGACCTATCAGCTTCTGGAAGAGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGACCTATCAGCTTCTGGAAGAGAATTC  535

seq1: chr8_122217345_122218287
seq2: B6Ng01-122H09.g_69_1013

seq1  GAATTCCACAGCACTGACCTTCCGGGCCACAAGTACCCTCTATTGGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCACTGACCTTCCGGGCCACAAGTACCCTCTATTGGCTCC  50

seq1  CCCTACTCTGCTCTCTCTCCCCTTTTCCCCTCTCTCCCTTCCTCTTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCTGCTCTCTCTCCCCTTTTCCCCTCTCTCCCTTCCTCTTGCTT  100

seq1  CTTCCCTCCTTTCTCTCTTCTTTACCTCCTACAAGCTTCAGTGTGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCTTTCTCTCTTCTTTACCTCCTACAAGCTTCAGTGTGCATGC  150

seq1  CCAAATTCTCTCTCACACAAATAACTGGAGTACAATAAAAGCTGGGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCTCTCTCACACAAATAACTGGAGTACAATAAAAGCTGGGAGAC  200

seq1  CAGATTGTTGCAAGTCCATTGTCACCTACCTGTCCCCATGATGCACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTTGCAAGTCCATTGTCACCTACCTGTCCCCATGATGCACCCTG  250

seq1  TGACAGAGGGTGAACCATTTTCTGAGTCCAGAGCCATGCGCTGTTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGGGTGAACCATTTTCTGAGTCCAGAGCCATGCGCTGTTATTTG  300

seq1  GTTGAGATGCATCTTCCGTCACCTTCCTTCTGGAATGTTCTGCAATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGATGCATCTTCCGTCACCTTCCTTCTGGAATGTTCTGCAATCTCT  350

seq1  TCCTGATGCCTGCTAGCTATAGCTTTTGACGAAATGAGCCAGTGACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCCTGCTAGCTATAGCTTTTGACGAAATGAGCCAGTGACTTCC  400

seq1  TGGAACACTTTCCCTTGTGACTGGAGTCCCCTGCTGTATAACACTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTTTCCCTTGTGACTGGAGTCCCCTGCTGTATAACACTGTGAG  450

seq1  GGAGGTGGCCACTGCTATGTCAGACTCGGAGCAGCTGTGGTCACCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGCCACTGCTATGTCAGACTCGGAGCAGCTGTGGTCACCCAGGC  500

seq1  TCCTGAGAGCCTCAGCAGGTCAGGTAGAATGGTGGGGGAGGGCATCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGCCTCAGCAGGTCAGGTAGAATGGTGGGGGAGGGCATCAGAT  550

seq1  CCTCAGCTGAGGTCACAGCCCCAGCTGTAACCCTCTTGGAGATGCTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTGAGGTCACAGCCCCAGCTGTAACCCTCTTGGAGATGCTAGAG  600

seq1  AAGCCAGGAGAAGAGTGCTGACTGGGGACGGACACTCCATCTGTGTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGAGAAGAGTGCTGACTGGGGACGGACACTCCATCTGTGTATCA  650

seq1  CCCACGCTGGGGTGGGATTGTTGGTGACATAGCTGCCTTTGAGCCCCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCTGGGGTGGGATTGTTGGTGACATAGCTGCCTTTGAGCCCCCAT  700

seq1  GTTTCTGGAAAGGATTCCAATATACTTGC-TGGCTCACCACACTGGACAC  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTTCTGGAAAGGATTCCAATATACTTGCTTGGCTCACCACACTGGACAC  750

seq1  TGCTTTTGCTTCTTTCCCTCCTCCTCCTCCTCTTTCCCCCTCCTCCCCTT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTTTTGCTTCTTTCCCTCCTCCTCCTCCTCTTT-CCCCTCCTCCCCTT  799

seq1  CTTCCTCCTCCTTCATCTTTGTGTGTGTGAGTGGGATGCATATG-TGCCA  848
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CTTCCTCCTCTTTCATCTTTGTGTGTGTGAGTGGGATGCATATGTTGCCA  849

seq1  GTGTGTGTGTAGGTCAAAGATAA-TACTGGGTATCACTCCTCCTCTTTGA  897
      |||||| |||| ||||||||||| ||||||||||||||||||||| ||||
seq2  GTGTGTTTGTA-GTCAAAGATAATTACTGGGTATCACTCCTCCTCCTTGA  898

seq1  C-TCTGTTTGAGACAGGATCTTTTGTTTACCACTGTGCAGAGCAAGC  943
      | | |||||||||||| |||||||||||||  ||||||| |||||||
seq2  CTTTTGTTTGAGACAGAATCTTTTGTTTACATCTGTGCAAAGCAAGC  945