BAC Information

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BAC

Clone NameB6Ng01-122H14
Chromosome8 (Build37)
Map Location 104,109,374 - 104,175,040
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042092, LOC384895
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H14.bB6Ng01-122H14.g
ACCDH925887DH925888
length1,1381,156
definitionDH925887|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H14, 5' end.DH925888|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,109,374 - 104,110,539)(104,173,867 - 104,175,040)
sequence
gaattccataatagcataaaattctcgagacaagtagtcctcagggctgt
gccacatatcagccatataactcatgggccacattccatgagttgtaaag
tcatttgttgtttttcctgcatagccctcgaggtaacctttgttttcttt
gacaagaactatcaggaaaaagcataagtacttggcaaaatataacatgc
ctgtttatttgttgttattcaataaatttaggtgctgtagaatgacagaa
atacattatcttcagttactctccttgaaagcttttgagaaattctcata
gacaactcttattccctctgtggcaactgttcctgtatttaaatctaaat
tttattttagtacctgaaagttggacttaaaatcattacatttctttact
tctttcttctccaaatatggccatattggttaaacttggtttttactatt
attttactctttaatggacatactagagatggtttggaaagcctagtata
ttaatgatgttttactctaaaactttcgttacactattgcatcgcttata
gtgcagcatcatgtaccagagtgtgtaaaaggagtgtatgttatgattga
gcgattagtaggaaacctcttgggtcacccctgttttctctcattctctc
tgtttctctctattctgtcttttgtgaattatttgtgacagaacaagggc
atttattgcatctgcagtgtcccaccgtcagatttgagtcattgctccca
caaggcatcatttaacttgttcttcagacccaggggtttctgcaaatcaa
taattttagaactcaacactctgactactaacattttttttaattggttg
tctggataattcttctttggtgggcgtgttcctatgtgtctgaggttgtt
tagcaattattcccatgattcttctcaacccatggatccatttactattt
taaacacacacaacaaaaaacgttctcttgatttgctagtacctctggag
acaaattcactagcaaaatccatcatctaaactgggtatcattttttctc
gtcttgtttattacctttaccatattagagtatccaaggaatctatcatt
tctcagtctctctttcaatcatgacatgaacatgaatg
gaattcatcagcatggtgggttggaggcatgttgatctttcaggtctagt
aaacacttcattgtttgcactggcatttgcagagaacccaacaaagcaga
tccttaccaaatgtctcctctataatgacctctggtgttaccagatccag
acttctctcctcctgcctgcatctcaaatggggagcagagagagcctgag
ttagccattttcacaaactgggaagacctaaattcaactcagctgtcctt
gcagtctggcaatcacccatgtctaaatgtgtctttcctatatttggtgc
taatcctcctgaaatcactttggacgggaggacaaactgccaacaacaga
atcaagccagtttttttttccccaagacaacacctgcccatttaaaaaaa
aaatgctttcctttaatgagaacatcctgtgtgctctacagctgtcctca
ctgtctttacctggcatttcccagaaaatgtttgttttagattttttgct
gtttctgtgttgtttaagggacacatgcacagtctctccccacctccacc
ccataagttgtgttaaagtacaacttctaagaacttgcaattttgggctt
gttagctggttggttttgtgcctcctgtgctagcttcacttgtaaggaaa
gagacgtgaaaagaaggacttggaccttcagaacctacattaagcattac
tttctgcccttgaccactatgtgaacttgaagaagcaatgtgtgattctt
tgcctcaatttgtcccactgaagtagcatgaatggactatggtcttgatc
taaagaaaaacaggacagactaattttttttcctgctcttcctggttgtg
ctcattggaaatctgggggagaaacacacgacgacgacgacgacgacgac
gacgacgacgacgacgaaacaccaccaccaccaccaccaatacactaaaa
aaaaaatacctcccaaccaccaacaacaaacaaacgaacccaaacttcag
gaaactagtaggaggaagaataaagctttaagacctttatgtagagaaag
acaagcatctcaaacaggaacacaacattaattaaattatgcctcatgga
ggcctatttacaagttaccttaaactcactgccaaaccttaacgggtgat
tatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104109374_104110539
seq2: B6Ng01-122H14.b_47_1184

seq1  GAATTCCATAATAGCATAAAATTCTCGAGACAAGTAGTCCTCAGGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATAGCATAAAATTCTCGAGACAAGTAGTCCTCAGGGCTGT  50

seq1  GCCACATATCAGCCATATAACTCATGGGCCACATTCCATGAGTTGTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATATCAGCCATATAACTCATGGGCCACATTCCATGAGTTGTAAAG  100

seq1  TCATTTGTTGTTTTTCCTGCATAGCCCTCGAGGTAACCTTTGTTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTTGTTTTTCCTGCATAGCCCTCGAGGTAACCTTTGTTTTCTTT  150

seq1  GACAAGAACTATCAGGAAAAAGCATAAGTACTTGGCAAAATATAACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAACTATCAGGAAAAAGCATAAGTACTTGGCAAAATATAACATGC  200

seq1  CTGTTTATTTGTTGTTATTCAATAAATTTAGGTGCTGTAGAATGACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTTGTTGTTATTCAATAAATTTAGGTGCTGTAGAATGACAGAA  250

seq1  ATACATTATCTTCAGTTACTCTCCTTGAAAGCTTTTGAGAAATTCTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTATCTTCAGTTACTCTCCTTGAAAGCTTTTGAGAAATTCTCATA  300

seq1  GACAACTCTTATTCCCTCTGTGGCAACTGTTCCTGTATTTAAATCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTCTTATTCCCTCTGTGGCAACTGTTCCTGTATTTAAATCTAAAT  350

seq1  TTTATTTTAGTACCTGAAAGTTGGACTTAAAATCATTACATTTCTTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAGTACCTGAAAGTTGGACTTAAAATCATTACATTTCTTTACT  400

seq1  TCTTTCTTCTCCAAATATGGCCATATTGGTTAAACTTGGTTTTTACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTCCAAATATGGCCATATTGGTTAAACTTGGTTTTTACTATT  450

seq1  ATTTTACTCTTTAATGGACATACTAGAGATGGTTTGGAAAGCCTAGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCTTTAATGGACATACTAGAGATGGTTTGGAAAGCCTAGTATA  500

seq1  TTAATGATGTTTTACTCTAAAACTTTCGTTACACTATTGCATCGCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATGTTTTACTCTAAAACTTTCGTTACACTATTGCATCGCTTATA  550

seq1  GTGCAGCATCATGTACCAGAGTGTGTAAAAGGAGTGTATGTTATGATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCATCATGTACCAGAGTGTGTAAAAGGAGTGTATGTTATGATTGA  600

seq1  GCGATTAGTAGGAAACCTCTTGGGTCACCCCTGTTTTCTCTCATTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTAGTAGGAAACCTCTTGGGTCACCCCTGTTTTCTCTCATTCTCTC  650

seq1  TGTTTCTCTCTATTCTGTCTTTTGTGAATTATTTGTGACAGAACAAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTCTATTCTGTCTTTTGTGAATTATTTGTGACAGAACAAGGGC  700

seq1  ATTTATTGCATCTGCAGTGTCCCACCGTCAGATTTGAGTCATTGCTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGCATCTGCAGTGTCCCACCGTCAGATTTGAGTCATTGCTCCCA  750

seq1  CAAGGCATCATTTAACTTGTTCTTCAGACCCAGGGGTTTCTGCAAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATCATTTAACTTGTTCTTCAGACCCAGGGGTTTCTGCAAATCAA  800

seq1  TAATTTTAGAACTCAACACTCTGACTACTAACATTTTTTTTAATTGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGAACTCAACACTCTGACTACTAACATTTTTTTTAATTGGTTG  850

seq1  TCTGGATAATTCTTCTTTGGTGGGCGTGTTCCTATGTGTCTGAGGTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATAATTCTTCTTTGGTGGGCGTGTTCCTATGTGTCTGAGGTTGTT  900

seq1  TAGCAATTATTCCCATGATTCTTCTCAACCAAGGGATCCATTTACTATTT  950
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  TAGCAATTATTCCCATGATTCTTCTCAACCCATGGATCCATTTACTATTT  950

seq1  TAAACAACAACAACAACAAAAAAACGTTCTCTTGAATTTGCTAAGTAACC  1000
      ||||||   |||||    |||||||||||||||| ||||||| ||| |||
seq2  TAAACACACACAAC----AAAAAACGTTCTCTTG-ATTTGCT-AGT-ACC  993

seq1  TCTGGAGACCAAATTTCACTTAGCAAAAATCCATCAATCTAAACTGGGGT  1050
      |||||||||  || ||||| |||| |||||||||| ||||||||| ||||
seq2  TCTGGAGAC--AAATTCAC-TAGC-AAAATCCATC-ATCTAAACT-GGGT  1037

seq1  ATTCATTTTTTTCTCGTCTTTGTTTATATACCCTTACCATAATTTAGAGT  1100
      | ||| |||||||||||| |||||||| |||| ||||||||  |||||||
seq2  A-TCA-TTTTTTCTCGTC-TTGTTTAT-TACCTTTACCATA--TTAGAGT  1081

seq1  AATTCAAAGGGGATCTATCATTTCTCCAGTTCTCTCTTTCAATCATTGAC  1150
      |  || || || ||||||||||||| ||| ||||||||||||||| ||||
seq2  A--TCCAA-GGAATCTATCATTTCT-CAG-TCTCTCTTTCAATCA-TGAC  1125

seq1  AATGGAAACATGAATG  1166
       |||  ||||||||||
seq2  -ATG--AACATGAATG  1138

seq1: chr8_104173867_104175040
seq2: B6Ng01-122H14.g_68_1223 (reverse)

seq1  CAGATAATCACCCTGTTAGGTTTGGCAGGTGAGTCT-AGGTTACTTGTAA  49
      |||||||||||||  | |||||||||| |||||| | |||| |||||| |
seq2  CAGATAATCACCCGTTAAGGTTTGGCA-GTGAGTTTAAGGTAACTTGT-A  48

seq1  AATAGGCCTCCAATGGGAGCATAATTTTAATTAATGTTTGTGTTCCTGTT  99
      ||||||||||| ||| | |||||| ||||||||||| ||||||||||| |
seq2  AATAGGCCTCC-ATGAG-GCATAA-TTTAATTAATG-TTGTGTTCCTG-T  93

seq1  TTGAGATGCTTGGTCTTTCTTCCTACATAAGGGTCTTAAAGCTTTTTTCT  149
      ||||||||||| ||||||||  |||||||| |||||||||||||| ||||
seq2  TTGAGATGCTT-GTCTTTCT--CTACATAAAGGTCTTAAAGCTTTATTCT  140

seq1  TCCTCCTACTATGTTTCCTGAGGTTTGGGGTTTTGTTTGTTTGTTTGTTT  199
      ||||||||||| ||||||||| |||||||  || ||||||||| ||||| 
seq2  TCCTCCTACTA-GTTTCCTGAAGTTTGGG--TTCGTTTGTTTG-TTGTTG  186

seq1  GTTGTTTGGGAGTATTTTTTTTTTAGTTGTATTGGTGGTGGTGGTGGTGG  249
      || ||| ||  ||||||||||||||| |||||||||||||||||||||||
seq2  GTGGTTGGGAGGTATTTTTTTTTTAG-TGTATTGGTGGTGGTGGTGGTGG  235

seq1  TGTTTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  TGTTTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGT--GTGT  283

seq1  TTTCTCCCCAGATTTTCCAATGAGCACAACCAGGAAGAGCAGGAAAAAAA  349
      ||   ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCCAGA-TTTCCAATGAGCACAACCAGGAAGAGCAGGAAAAAAA  332

seq1  ATTAGTCTGTCCTGTTTTTCTTTAGATCAAAGACCATAGTCCATTCATGC  399
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTAGTCTGTCCTGTTTTTCTTTAGATC-AAGACCATAGTCCATTCATGC  381

seq1  TACTTCAGTGGGACAAATTGAGGCAAAGAATCACACATTGCTTCTTCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGTGGGACAAATTGAGGCAAAGAATCACACATTGCTTCTTCAAG  431

seq1  TTCACATAGTGGTCAAGGGCAGAAAGTAATGCTTAATGTAGGTTCTGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAGTGGTCAAGGGCAGAAAGTAATGCTTAATGTAGGTTCTGAAG  481

seq1  GTCCAAGTCCTTCTTTTCACGTCTCTTTCCTTACAAGTGAAGCTAGCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGTCCTTCTTTTCACGTCTCTTTCCTTACAAGTGAAGCTAGCACA  531

seq1  GGAGGCACAAAACCAACCAGCTAACAAGCCCAAAATTGCAAGTTCTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACAAAACCAACCAGCTAACAAGCCCAAAATTGCAAGTTCTTAGA  581

seq1  AGTTGTACTTTAACACAACTTATGGGGTGGAGGTGGGGAGAGACTGTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTTTAACACAACTTATGGGGTGGAGGTGGGGAGAGACTGTGCA  631

seq1  TGTGTCCCTTAAACAACACAGAAACAGCAAAAAATCTAAAACAAACATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCTTAAACAACACAGAAACAGCAAAAAATCTAAAACAAACATTT  681

seq1  TCTGGGAAATGCCAGGTAAAGACAGTGAGGACAGCTGTAGAGCACACAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAATGCCAGGTAAAGACAGTGAGGACAGCTGTAGAGCACACAGG  731

seq1  ATGTTCTCATTAAAGGAAAGCATTTTTTTTTTAAATGGGCAGGTGTTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCATTAAAGGAAAGCATTTTTTTTTTAAATGGGCAGGTGTTGTC  781

seq1  TTGGGGAAAAAAAAACTGGCTTGATTCTGTTGTTGGCAGTTTGTCCTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAAAAAAAACTGGCTTGATTCTGTTGTTGGCAGTTTGTCCTCCC  831

seq1  GTCCAAAGTGATTTCAGGAGGATTAGCACCAAATATAGGAAAGACACATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGTGATTTCAGGAGGATTAGCACCAAATATAGGAAAGACACATT  881

seq1  TAGACATGGGTGATTGCCAGACTGCAAGGACAGCTGAGTTGAATTTAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATGGGTGATTGCCAGACTGCAAGGACAGCTGAGTTGAATTTAGGT  931

seq1  CTTCCCAGTTTGTGAAAATGGCTAACTCAGGCTCTCTCTGCTCCCCATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGTTTGTGAAAATGGCTAACTCAGGCTCTCTCTGCTCCCCATTT  981

seq1  GAGATGCAGGCAGGAGGAGAGAAGTCTGGATCTGGTAACACCAGAGGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGGCAGGAGGAGAGAAGTCTGGATCTGGTAACACCAGAGGTCA  1031

seq1  TTATAGAGGAGACATTTGGTAAGGATCTGCTTTGTTGGGTTCTCTGCAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGAGACATTTGGTAAGGATCTGCTTTGTTGGGTTCTCTGCAAA  1081

seq1  TGCCAGTGCAAACAATGAAGTGTTTACTAGACCTGAAAGATCAACATGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGCAAACAATGAAGTGTTTACTAGACCTGAAAGATCAACATGCC  1131

seq1  TCCAACCCACCATGCTGATGAATTC  1174
      |||||||||||||||||||||||||
seq2  TCCAACCCACCATGCTGATGAATTC  1156