BAC Information

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BAC

Clone NameB6Ng01-122J11
Chromosome8 (Build37)
Map Location 99,914,609 - 100,068,547
singlet/doubletdoublet
Overlap geneLOC546090
Upstream geneLOC333331
Downstream geneLOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122J11.bB6Ng01-122J11.g
ACCDH925976DH925977
length1,0531,139
definitionDH925976|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J11, 5' end.DH925977|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,914,609 - 99,915,661)(100,067,404 - 100,068,547)
sequence
gaattctttctaaatacagctcttcgcccttcactgcttgagtaagaaag
aaaatatagataactgtttagtgtctagtaactgtcaactgtctgaagaa
caggggcatgtaagtggagatcccgcagactggttcaatattgtgattat
tctaggtccaagcacccaggcaccatagtaggagaaaaaggattgacagg
cagagattgaaaacactttttagaagaaaaagaaggaaaagaaccttact
gagtccattaacagcttctagattatcactacctgcaatgtggggctgtc
attgtgcacatatgtgcgctcatgcccatgtgtgtatgtgtgtattcatt
tgagaggtcagtttctttgtgtgcaggttataccatgtgaagaactgtag
aacagactggatggtgtacatttctgggacattagtgttagatgttatac
atttattaatacccagttgtaggatctctgccatgcaaaaaacttccatg
gaaatcagtgtcctgcaaatagtggcagtcctgtttaaagtgtgtgtcat
gggtcatctggtgtggtgtcaaagtattctttgacttgaacttgcatgtc
aaagaaaagtccttaaagggacctgcttcgtttgtgatcttatatcactg
acattctctccacttctgacagagtagcaaacccaatcttgaaaaactgg
ttggggaatgttctctttgtaactacttccaagtgagcaggtgcaaagta
ttgaccctacctatcatttatagctcttttgagtttgagttccatggggt
ggcacaaaaaagaaccatactttggaatggtttttaatagaatgtccttg
tctggttcatggaacacaaaggaaagagtatcttttcttcactggcaggg
ttgaaagccttgttgaagcatcatcttagagatgacacaggttgaatccc
agaaagtacaggcttgacaaacagtttaaaattcaggtatgaaagtcaag
aagtaaacagagacctgggagtggtctaagttatggtaggaacagacagc
tat
gaattcaatggctcatttgataaatgcaaaaccagcttaacgtttgattt
tcttcaaatagaactcaaaataggattaactgtgtcatccctcagaaatg
aagccgtttctaatatgtcttcagtgaaggagaagaggaagatgaaaaca
ttctacaaattacaataacctgacgcctgctcactaaacaataccatatt
aattttcaatgttctgcacatggctgaatggaaaatcccttaatcccagg
tcccattttacttttgcctcattgtctctgtcccctcatcatatcacttt
cagaaatcaccagtggctgtgcattctcttccactttattactgccagag
aagtcatagactagttaatgcagatctgcttcccagagggatgctaaaat
ggatttactttctctattttgagtgattgactttgggaaattctcttctt
tatcagttactaacagagaaacagaaccttccaggagtgacagtaaacta
accacacagtctccagttctataggcataaagacgtttaagaggcttgag
attaactggaccattcatgagtatgaaaatcagatgaccccatgagcccc
agtgagacgatgtgttgatgcttaaattactggctcctggagatctgtat
ttgaataatgtctgaacaagctctgcacactttattcaagtcactgtgct
acgtttttgtgttttccttacttttcccaacaaactgtcaccttcgagaa
aaaggacagggaaagtgtcttgaacagccgctttgcttatgacagcaaat
aaacagacagacagacagaggtgttttatttttgaaagtctaattatcta
cttagaaaactaacataacgttaaatacatatgatgaatgcaacaaatat
acccaggatatagaataggaaaggtatggctaacaatctaggagtttggt
gagtggagaactgtttgataagcttgttgtcatccaataataaataaagg
gatcagatgagccatatatttgctatagaaatcaatgttttagttgctta
tcttgaaccttaacaaagacaagatttttgtggaattgaaaaatccatct
gtagggtacacacagagtctctctatctatgaaatgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99914609_99915661
seq2: B6Ng01-122J11.b_47_1099

seq1  GAATTCTTTCTAAATACAGCTCTTCGCCCTTCACTGCTTGAGTAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAAATACAGCTCTTCGCCCTTCACTGCTTGAGTAAGAAAG  50

seq1  AAAATATAGATAACTGTTTAGTGTCTAGTAACTGTCAACTGTCTGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAGATAACTGTTTAGTGTCTAGTAACTGTCAACTGTCTGAAGAA  100

seq1  CAGGGGCATGTAAGTGGAGATCCCGCAGACTGGTTCAATATTGTGATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCATGTAAGTGGAGATCCCGCAGACTGGTTCAATATTGTGATTAT  150

seq1  TCTAGGTCCAAGCACCCAGGCACCATAGTAGGAGAAAAAGGATTGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTCCAAGCACCCAGGCACCATAGTAGGAGAAAAAGGATTGACAGG  200

seq1  CAGAGATTGAAAACACTTTTTAGAAGAAAAAGAAGGAAAAGAACCTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTGAAAACACTTTTTAGAAGAAAAAGAAGGAAAAGAACCTTACT  250

seq1  GAGTCCATTAACAGCTTCTAGATTATCACTACCTGCAATGTGGGGCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATTAACAGCTTCTAGATTATCACTACCTGCAATGTGGGGCTGTC  300

seq1  ATTGTGCACATATGTGCGCTCATGCCCATGTGTGTATGTGTGTATTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCACATATGTGCGCTCATGCCCATGTGTGTATGTGTGTATTCATT  350

seq1  TGAGAGGTCAGTTTCTTTGTGTGCAGGTTATACCATGTGAAGAACTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTCAGTTTCTTTGTGTGCAGGTTATACCATGTGAAGAACTGTAG  400

seq1  AACAGACTGGATGGTGTACATTTCTGGGACATTAGTGTTAGATGTTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTGGATGGTGTACATTTCTGGGACATTAGTGTTAGATGTTATAC  450

seq1  ATTTATTAATACCCAGTTGTAGGATCTCTGCCATGCAAAAAACTTCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAATACCCAGTTGTAGGATCTCTGCCATGCAAAAAACTTCCATG  500

seq1  GAAATCAGTGTCCTGCAAATAGTGGCAGTCCTGTTTAAAGTGTGTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGTGTCCTGCAAATAGTGGCAGTCCTGTTTAAAGTGTGTGTCAT  550

seq1  GGGTCATCTGGTGTGGTGTCAAAGTATTCTTTGACTTGAACTTGCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATCTGGTGTGGTGTCAAAGTATTCTTTGACTTGAACTTGCATGTC  600

seq1  AAAGAAAAGTCCTTAAAGGGACCTGCTTCGTTTGTGATCTTATATCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGTCCTTAAAGGGACCTGCTTCGTTTGTGATCTTATATCACTG  650

seq1  ACATTCTCTCCACTTCTGACAGAGTAGCAAACCCAATCTTGAAAAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTCCACTTCTGACAGAGTAGCAAACCCAATCTTGAAAAACTGG  700

seq1  TTGGGGAATGTTCTCTTTGTAACTACTTCCAAGTGAGCAGGTGCAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAATGTTCTCTTTGTAACTACTTCCAAGTGAGCAGGTGCAAAGTA  750

seq1  TTGACCCTACCTATCATTTATAGCTCTTTTGAGTTTGAGTTCCATGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTACCTATCATTTATAGCTCTTTTGAGTTTGAGTTCCATGGGGT  800

seq1  GGCACAAAAAAGAACCATACTTTGGAATGG-TTTTAATAGAATGCCCTTG  849
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GGCACAAAAAAGAACCATACTTTGGAATGGTTTTTAATAGAATGTCCTTG  850

seq1  TCTGGTTCATGGAACAC-AAGGAAAGAGTATC-TTTCTTCACTGGCAGGG  897
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  TCTGGTTCATGGAACACAAAGGAAAGAGTATCTTTTCTTCACTGGCAGGG  900

seq1  TTGAAAGCCTTGTTGAAGCATCATC-TAGAGATGACACA-GTTGAATCCC  945
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TTGAAAGCCTTGTTGAAGCATCATCTTAGAGATGACACAGGTTGAATCCC  950

seq1  AGAAAGTACAGGCTTGACAAAACAAGTTTAAAATACAGGTAATGAAGTTC  995
      |||||||||||||||||||||   |||||||||| ||||| |||||  ||
seq2  AGAAAGTACAGGCTTGACAAA--CAGTTTAAAATTCAGGT-ATGAAAGTC  997

seq1  AAGAAGTAAACAGAGACCTGGGAGTGGTCTAAGTATGGGAAGGAAACAGG  1045
      ||||||||||||||||||||||||||||||||||   || ||| |||| |
seq2  AAGAAGTAAACAGAGACCTGGGAGTGGTCTAAGTTATGGTAGG-AACA-G  1045

seq1  ACAGCTAT  1053
      ||||||||
seq2  ACAGCTAT  1053

seq1: chr8_100067404_100068547
seq2: B6Ng01-122J11.g_65_1203 (reverse)

seq1  GATCA-TTCCTAGATAGAG-GACTCTTGTTGTACCCTACAGAT-GATTTT  47
      ||||| ||| ||||||||| ||||||   |||||||||||||| ||||||
seq2  GATCATTTCATAGATAGAGAGACTCTGTGTGTACCCTACAGATGGATTTT  50

seq1  TCAAATCCCTACAAATATCTGTACTTTGTTAAGTGTCAAGATAAGCAACT  97
      |||| |||  ||||| ||||   ||||||||||  |||||||||||||||
seq2  TCAATTCC--ACAAAAATCTTGTCTTTGTTAAGGTTCAAGATAAGCAACT  98

seq1  -AAACATTGATTTCTATAGCAAAATATATGGCTCATCTTGATCCCTTTAT  146
       ||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  AAAACATTGATTTCTATAGC-AAATATATGGCTCATC-TGATCCCTTTAT  146

seq1  TTATTATTGGATGACAACAAGCTTATCAAACAGTTCCTCACTCACCAAAC  196
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  TTATTATTGGATGACAACAAGCTTATCAAACAGTTCTCCACTCACCAAAC  196

seq1  TCCTAGATTGTTAGCCATTACCTTTCCTATTCTATATCCTGGGTATATTT  246
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  TCCTAGATTGTTAGCCA-TACCTTTCCTATTCTATATCCTGGGTATA-TT  244

seq1  TGTTGCATTCATCATATGTATTTAAACGTTATGTTTAGTTTTCCTAAGTA  296
      ||||||||||||||||||||||| ||||||||| |||||||| |||||||
seq2  TGTTGCATTCATCATATGTATTT-AACGTTATG-TTAGTTTT-CTAAGTA  291

seq1  GATAATTAGACTTTCAAAAATAAAACACCTCTGTCTGTCTGTCTGTTTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTAGACTTTCAAAAATAAAACACCTCTGTCTGTCTGTCTGTTTAT  341

seq1  TTGCTGTCATAAGCAAAGCGGCTGTTCAAGACACTTTCCCTGTCCTTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCATAAGCAAAGCGGCTGTTCAAGACACTTTCCCTGTCCTTTTT  391

seq1  CTCGAAGGTGACAGTTTGTTGGGAAAAGTAAGGAAAACACAAAAACGTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGGTGACAGTTTGTTGGGAAAAGTAAGGAAAACACAAAAACGTAG  441

seq1  CACAGTGACTTGAATAAAGTGTGCAGAGCTTGTTCAGACATTATTCAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGACTTGAATAAAGTGTGCAGAGCTTGTTCAGACATTATTCAAAT  491

seq1  ACAGATCTCCAGGAGCCAGTAATTTAAGCATCAACACATCGTCTCACTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTCCAGGAGCCAGTAATTTAAGCATCAACACATCGTCTCACTGG  541

seq1  GGCTCATGGGGTCATCTGATTTTCATACTCATGAATGGTCCAGTTAATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGGGGTCATCTGATTTTCATACTCATGAATGGTCCAGTTAATCT  591

seq1  CAAGCCTCTTAAACGTCTTTATGCCTATAGAACTGGAGACTGTGTGGTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTCTTAAACGTCTTTATGCCTATAGAACTGGAGACTGTGTGGTTA  641

seq1  GTTTACTGTCACTCCTGGAAGGTTCTGTTTCTCTGTTAGTAACTGATAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGTCACTCCTGGAAGGTTCTGTTTCTCTGTTAGTAACTGATAAA  691

seq1  GAAGAGAATTTCCCAAAGTCAATCACTCAAAATAGAGAAAGTAAATCCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATTTCCCAAAGTCAATCACTCAAAATAGAGAAAGTAAATCCAT  741

seq1  TTTAGCATCCCTCTGGGAAGCAGATCTGCATTAACTAGTCTATGACTTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATCCCTCTGGGAAGCAGATCTGCATTAACTAGTCTATGACTTCT  791

seq1  CTGGCAGTAATAAAGTGGAAGAGAATGCACAGCCACTGGTGATTTCTGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGTAATAAAGTGGAAGAGAATGCACAGCCACTGGTGATTTCTGAA  841

seq1  AGTGATATGATGAGGGGACAGAGACAATGAGGCAAAAGTAAAATGGGACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATGATGAGGGGACAGAGACAATGAGGCAAAAGTAAAATGGGACC  891

seq1  TGGGATTAAGGGATTTTCCATTCAGCCATGTGCAGAACATTGAAAATTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAGGGATTTTCCATTCAGCCATGTGCAGAACATTGAAAATTAA  941

seq1  TATGGTATTGTTTAGTGAGCAGGCGTCAGGTTATTGTAATTTGTAGAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATTGTTTAGTGAGCAGGCGTCAGGTTATTGTAATTTGTAGAATG  991

seq1  TTTTCATCTTCCTCTTCTCCTTCACTGAAGACATATTAGAAACGGCTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCTTCCTCTTCTCCTTCACTGAAGACATATTAGAAACGGCTTCA  1041

seq1  TTTCTGAGGGATGACACAGTTAATCCTATTTTGAGTTCTATTTGAAGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGGATGACACAGTTAATCCTATTTTGAGTTCTATTTGAAGAAA  1091

seq1  ATCAAACGTTAAGCTGGTTTTGCATTTATCAAATGAGCCATTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACGTTAAGCTGGTTTTGCATTTATCAAATGAGCCATTGAATTC  1139