BAC Information

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BAC

Clone NameB6Ng01-122P11
Chromosome8 (Build37)
Map Location 113,644,572 - 113,795,714
singlet/doubletdoublet
Overlap gene4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3
Upstream geneCalb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl
Downstream geneLOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122P11.bB6Ng01-122P11.g
ACCDH926260DH926261
length1,115802
definitionDH926260|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P11, 5' end.DH926261|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,644,572 - 113,645,698)(113,794,910 - 113,795,714)
sequence
gaattctgttattagagttaaaatctacatgacagcttacaaccacctga
gtccagctgcagcagatccagggctctcttctggcctctgtaaacaccag
cagttttggtgcacaaatttacatgcagactaaagacccactcacataaa
attttttcaaaaatcctcaaaaactggcactctcctgcaatcccaggact
cgtgaagcagaggcatacagatctctctgggtttgaggacagcgtcgtct
atatagtgagttccaggacagccagggcttattatgttcctccttgtggt
cctgtgagaatcgtacttggatccatgtttactttagaacatgtgagaaa
actgtctagacttgctcggcttctgtgctgcccactctgtggttccactg
gttcttgattgtatgatgtgaattcttctctctgtcctatctgaggccca
acagccttctgtctccatctaaacaggttcctagcagaatggatggtata
tggttatccctctgaaaatgtctgggagttggatttgcagcgcttcggag
ccctccagagcagccgcacctttctgcgccaccgggtcatggaagttatg
cgtaagtgtgcttttactctaattttactgggctcagcagtctttgtgtc
gtttgatttattagtcagggctttcccttacctctttaataaccattttg
aattgggtttctcatctgtgcctatttcaggtcggaggatggggatttat
gccccacctgacacttaggagcatttccggcacatggggccatgctagga
ataggaaggactagacttgcaagctggtatgttgcagtttcctgtgtgct
gctagcagtgtagccttttcagtgggccttggtgctacctcagcttccct
cctaggctttgaagtcattgggtagtttttgtcattattttgagatggag
tctcagattcaggctgtctttacttgctatattgcctaaacttctgatct
tcctgctctatctctaaatgctaggattacagtgtaggccaccatcctgt
ctgtctgtctgttcctctgttccgggtaatggggtgggtacacattgcag
aacagcaaatgtagg
gaattccaagttgtggctttatctgcttaatgaaacctatttgaagatgt
gtaatttgttttgtttttaaaacttaaagtaagctttaaaaatgtcagct
tccagacagttgaggtaatacatgcctttggtcccagcacgctgaaggca
gaaactggtagatccctatgagttcaaggccaccctcactacaaagtagg
ttttggacagccaaaagctataacacggagaaaaaggggggggggggggc
aaaagaaaaatgttagcttccacagcgtagaggaaagtcgccttctctcc
ctttcttcccccaggtgcttttgatagagtgatgcttaagagtagctgcc
tgggcctggagcttcgatttcaggataggattcaaattaaatagaattca
actaactaaagcagatggccacaataaaagctgtgcgtgtcaggttagtc
tggggcagggttaggatatgacttgccttgaaggacatttaaggctgact
ggggatttgctaccacagaagctaagctaaataccaagccttgccgtggc
aatttgcatttccacaataaatttggattggggtgggggagtgccaggga
cctcaacctggtaaggttttgctctaccactgagctgtattagaagccca
aatctggtgatttggaagcagattcacagtatggaccgattgaccaaaga
caaccttattgaagaaacttcatctctaaacctgggctcttagtcttagc
acagcaagatcgttttgttttaaatcttgtcaaagggcattgggatttct
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113644572_113645698
seq2: B6Ng01-122P11.b_51_1165

seq1  GAATTCTGTTATTAGAGTTAAAATCTACATGACAGCTTACAACCACCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATTAGAGTTAAAATCTACATGACAGCTTACAACCACCTGA  50

seq1  GTCCAGCTGCAGCAGATCCAGGGCTCTCTTCTGGCCTCTGTAAACACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTGCAGCAGATCCAGGGCTCTCTTCTGGCCTCTGTAAACACCAG  100

seq1  CAGTTTTGGTGCACAAATTTACATGCAGACTAAAGACCCACTCACATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGGTGCACAAATTTACATGCAGACTAAAGACCCACTCACATAAA  150

seq1  ATTTTTTCAAAAATCCTCAAAAACTGGCACTCTCCTGCAATCCCAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAAAATCCTCAAAAACTGGCACTCTCCTGCAATCCCAGGACT  200

seq1  CGTGAAGCAGAGGCATACAGATCTCTCTGGGTTTGAGGACAGCGTCGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGCAGAGGCATACAGATCTCTCTGGGTTTGAGGACAGCGTCGTCT  250

seq1  ATATAGTGAGTTCCAGGACAGCCAGGGCTTATTATGTTCCTCCTTGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGAGTTCCAGGACAGCCAGGGCTTATTATGTTCCTCCTTGTGGT  300

seq1  CCTGTGAGAATCGTACTTGGATCCATGTTTACTTTAGAACATGTGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGAATCGTACTTGGATCCATGTTTACTTTAGAACATGTGAGAAA  350

seq1  ACTGTCTAGACTTGCTCGGCTTCTGTGCTGCCCACTCTGTGGTTCCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTAGACTTGCTCGGCTTCTGTGCTGCCCACTCTGTGGTTCCACTG  400

seq1  GTTCTTGATTGTATGATGTGAATTCTTCTCTCTGTCCTATCTGAGGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGATTGTATGATGTGAATTCTTCTCTCTGTCCTATCTGAGGCCCA  450

seq1  ACAGCCTTCTGTCTCCATCTAAACAGGTTCCTAGCAGAATGGATGGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTCTGTCTCCATCTAAACAGGTTCCTAGCAGAATGGATGGTATA  500

seq1  TGGTTATCCCTCTGAAAATGTCTGGGAGTTGGATTTGCAGCGCTTCGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCCCTCTGAAAATGTCTGGGAGTTGGATTTGCAGCGCTTCGGAG  550

seq1  CCCTCCAGAGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGAGCAGCCGCACCTTTCTGCGCCACCGGGTCATGGAAGTTATG  600

seq1  CGTAAGTGTGCTTTTACTCTAATTTTACTGGGCTCAGCAGTCTTTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTGTGCTTTTACTCTAATTTTACTGGGCTCAGCAGTCTTTGTGTC  650

seq1  GTTTGATTTATTAGTCAGGGCTTTCCCTTACCTCTTTAATAACCATTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTTATTAGTCAGGGCTTTCCCTTACCTCTTTAATAACCATTTTG  700

seq1  AATTGGGTTTCTCATCTGTGCCTATTTCAGGTCGGAGGATGGGGATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTTTCTCATCTGTGCCTATTTCAGGTCGGAGGATGGGGATTTAT  750

seq1  GCCCCACCTGACACTTAGGAGCATTTCCGGCACATGGGGCCATGCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTGACACTTAGGAGCATTTCCGGCACATGGGGCCATGCTAGGA  800

seq1  ATAGGAAGGACTAGACTTGCAAGCTGGTATGTTGCAGTTTCCTGTGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGGACTAGACTTGCAAGCTGGTATGTTGCAGTTTCCTGTGTGCT  850

seq1  GCTAGCAGTGTAGCCTTTTCAGTGGGCCTTGGTGCTACCTCAGCTTCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGTGTAGCCTTTTCAGTGGGCCTTGGTGCTACCTCAGCTTCCCT  900

seq1  CCTAGGCTTTGAAGTCATTGGGTAGTTTTTGTCATTATTTTGAGATGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGCTTTGAAGTCATTGGGTAGTTTTTGTCATTATTTTGAGATGGAG  950

seq1  TCTCAGAATCCAGGCTGTCTTTAACTTGCTATATTGCCTTAAACTTCTGA  1000
      |||||| || |||||||||||| ||||||||||||||| |||||||||||
seq2  TCTCAG-ATTCAGGCTGTCTTT-ACTTGCTATATTGCC-TAAACTTCTGA  997

seq1  TCTTCCTGCCTCTATCTCCTAAATGCTAGGATTACAGGTGTATGCCACCA  1050
      |||||||| |||||||| |||||||||||||||||| ||||| |||||| 
seq2  TCTTCCTG-CTCTATCT-CTAAATGCTAGGATTACA-GTGTAGGCCACC-  1043

seq1  ATCCTTGTCTGTCTGTCTGTCCCTCTGTTCCGTGTAATGGTGTGTGTACA  1100
      |||| ||||||||||||||| ||||||||||| ||||||| ||| |||||
seq2  ATCC-TGTCTGTCTGTCTGTTCCTCTGTTCCGGGTAATGGGGTGGGTACA  1092

seq1  CATATTGCAGAACAGGGCAGATGTAGG  1127
      |  |||||||||||  ||| |||||||
seq2  C--ATTGCAGAACA--GCAAATGTAGG  1115

seq1: chr8_113794910_113795714
seq2: B6Ng01-122P11.g_69_870 (reverse)

seq1  TCAGAAATCCCAATGCCCTATGACAAGATTTTAAAACAAAACAGATCTTG  50
      ||||||||||||||||||| |||||||| ||||||||||||| |||||||
seq2  TCAGAAATCCCAATGCCCTTTGACAAGA-TTTAAAACAAAAC-GATCTTG  48

seq1  CTGGTGCTAAGACT-AGAGCCCAGGTTTAGAGATGAAGTTTCTTGCAATA  99
      || ||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CT-GTGCTAAGACTAAGAGCCCAGGTTTAGAGATGAAGTTTCTT-CAATA  96

seq1  AGGTTGTCTTTGGTCAATCGGTCCATACTGTGAATCTGCTTCCAAATCA-  148
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGTTGTCTTTGGTCAATCGGTCCATACTGTGAATCTGCTTCCAAATCAC  146

seq1  CAGATTTGGGCTTCTAATACAGCTCAGTGGTAGAGCAAAAACCTTAACCA  198
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  CAGATTTGGGCTTCTAATACAGCTCAGTGGTAGAGC-AAAACCTT-ACCA  194

seq1  GGTTGAGGT-CCTGGCACTCCCCCACCCCAATCCAAATTTATTGTGGAAA  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGGTCCCTGGCACTCCCCCACCCCAATCCAAATTTATTGTGGAAA  244

seq1  TGCAAATTGCCACGGCAAGGCTTGGTATTTAGCTTAGCTTCTGTGGTAGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTGCCACGGCAAGGCTTGGTATTTAGCTTAGCTTCTGTGGTAGC  294

seq1  AAATCCCCAGTCAGCCTTAAATGTCCTTCAAGGCAAGTCATATCCTAACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCCAGTCAGCCTTAAATGTCCTTCAAGGCAAGTCATATCCTAACC  344

seq1  CTGCCCCAGACTAACCTGACACGCACAGCTTTTATTGTGGCCATCTGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAGACTAACCTGACACGCACAGCTTTTATTGTGGCCATCTGCTT  394

seq1  TAGTTAGTTGAATTCTATTTAATTTGAATCCTATCCTGAAATCGAAGCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTTGAATTCTATTTAATTTGAATCCTATCCTGAAATCGAAGCTC  444

seq1  CAGGCCCAGGCAGCTACTCTTAAGCATCACTCTATCAAAAGCACCTGGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCAGGCAGCTACTCTTAAGCATCACTCTATCAAAAGCACCTGGGG  494

seq1  GAAGAAAGGGAGAGAAGGCGACTTTCCTCTACGCTGTGGAAGCTAACATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGAGAGAAGGCGACTTTCCTCTACGCTGTGGAAGCTAACATT  544

seq1  TTTCTTTTGCCCCCCCCCCCCCCTTTTTCTCCGTGTTATAGCTTTTGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGCCCCCCCCCCCCCCTTTTTCTCCGTGTTATAGCTTTTGGCT  594

seq1  GTCCAAAACCTACTTTGTAGTGAGGGTGGCCTTGAACTCATAGGGATCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAACCTACTTTGTAGTGAGGGTGGCCTTGAACTCATAGGGATCTA  644

seq1  CCAGTTTCTGCCTTCAGCGTGCTGGGACCAAAGGCATGTATTACCTCAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTGCCTTCAGCGTGCTGGGACCAAAGGCATGTATTACCTCAAC  694

seq1  TGTCTGGAAGCTGACATTTTTAAAGCTTACTTTAAGTTTTAAAAACAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAAGCTGACATTTTTAAAGCTTACTTTAAGTTTTAAAAACAAAA  744

seq1  CAAATTACACATCTTCAAATAGGTTTCATTAAGCAGATAAAGCCACAACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTACACATCTTCAAATAGGTTTCATTAAGCAGATAAAGCCACAACT  794

seq1  TGGAATTC  805
      ||||||||
seq2  TGGAATTC  802