BAC Information

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BAC

Clone NameB6Ng01-123H16
Chromosome8 (Build37)
Map Location 63,990,045 - 64,201,788
singlet/doubletdoublet
Overlap genePalld, LOC100040872
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H16.bB6Ng01-123H16.g
ACCDH926632DH926633
length1,1141,072
definitionDH926632|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H16, 5' end.DH926633|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,990,045 - 63,991,188)(64,200,711 - 64,201,788)
sequence
gaattctgttataaccactaaggcatcaggtaagattgtggcctgtgaca
cagtgaactggaactcgccacctcacgcccaacttctgacctacccgact
cggacaatacagatctctgaagatcccaactctgctggttccttacagca
gcaatagatcacaacatcacagagggccaactgtcatctgttaaatattt
atttattgatgttaagtccacattacaacagcacaacaatccaaagtacg
gtacttatttttttgcttgtttttgtttttttcataaatacaacataaaa
ggtggcaaaagaatgcaagttaatcccaagcccagcaaattaggaaaaaa
aaaaagtcacattcagaaaaatttggcaattatgatatgatataggccgc
aattctacaacagagataggcccatgagaccctgcatggcaatttaaatc
ccccaatagcaatgtgtatgtggtcaaagagacttgtaccacactgcaca
ggaacacctgccacccagtgttcaagcctgctaaaacttgcttggttggt
gttcttacaaaagtagaaagctgtacaagtgaggcagtaatacaaaatat
acggggtgcttacagatataaaatcgttttaagaagtactatgtatgact
tgagtaactgagctaagaagttcaacacctttataaataatgaacaatag
atatgttttgcatgaggaacaaacacagtgttttcttttcatagcagagt
acctttaaagcctcatggtttagactatcaggccaaattattttctctca
cttaaaaaaaaaaaattggttccgacttaaagtcatcaagtctggtcaga
atcaactcagctagccgatgcagactcgtgcattcaaaaagcagtctttg
cagctggcctcacagatgctcagagcctggaccctctaggctgggttcat
ggagacaggactagtacttccactcggcacttactctagtgccatgaaaa
gaagttcactgtctgcacagctgttctctatcagtctcttcctcagcgac
agacccttcggcacatctcgaatgacccctgccaccctctacatgtcaac
tgctcacacctaat
gaattccagatggtgctgaggcagctgtcccaaggtctacagtttgaaaa
accaaaaaacaggcactggagaacttttcctccaaagtgagtttcagcaa
ggaacagtcagtgtatttaacctccttccctgctcctctgtgaggcaaaa
gcagccacaggtgatatgtaaatgaatgaatgaggttagactttaaaaaa
gaaagctttattgactacaaagtttgaggttattataattttcagtgtcc
caaaatattattcttctcctgattgtttcccccttctcagctattcagaa
atatatcaagcaggatttgctggcaaccatgttaaaacaggctgcagagt
gtgcatttgctgaattagagggtgagattctgcacgcacgcatgtatagc
tgacagtggccgcccatccacccgatgggcatcattctcttcttaaacct
ccccgtatattttcatgaagcatttccccctaatagtgtgtttatatctt
ctttttcctggaagacaaagctatctactgccagaacagatgcacaaact
ccacattcatttcagagtttaccagacacaattccgttcctttgtttaga
caacactcagcggctgtatggtcagtggagtgtgtctgttgatcaagcct
ttggcttggcctgggagaagatatttgtaatgaggattaatgcagaggac
cagaggagacttgcaaagaagggaaggtgtgggctcgaagggtaggagag
taacctgtgaggcgatgtacagtgtagagtccccggaattatttgacaga
aacaggattttattgtaaaagaacatagaaaataaaaccaaggtgaagtc
actaggaagccatcaatgacagacctgggtataggagtgacagacaggtg
gaagaattcagagctttcgtgtggtgacagacatggaatttaccatattc
agaggtaggggatcatcaactaaggccaatatcaccgttagtgctagtgg
ttagcatggctgtactatggctgtgtaagagagaagaaaggggatagcat
ggctctaagcctgggatggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63990045_63991188
seq2: B6Ng01-123H16.b_45_1158

seq1  GAATTCTGTTATAACCACTAAGGCATCAGGTAAGATTGTGGCCTGTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATAACCACTAAGGCATCAGGTAAGATTGTGGCCTGTGACA  50

seq1  CAGTGAACTGGAACTCGCCACCTCACGCCCAACTTCTGACCTACCCGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACTGGAACTCGCCACCTCACGCCCAACTTCTGACCTACCCGACT  100

seq1  CGGACAATACAGATCTCTGAAGATCCCAACTCTGCTGGTTCCTTACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAATACAGATCTCTGAAGATCCCAACTCTGCTGGTTCCTTACAGCA  150

seq1  GCAATAGATCACAACATCACAGAGGGCCAACTGTCATCTGTTAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGATCACAACATCACAGAGGGCCAACTGTCATCTGTTAAATATTT  200

seq1  ATTTATTGATGTTAAGTCCACATTACAACAGCACAACAATCCAAAGTACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGATGTTAAGTCCACATTACAACAGCACAACAATCCAAAGTACG  250

seq1  GTACTTATTTTTTTGCTTGTTTTTGTTTTTTTCATAAATACAACATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATTTTTTTGCTTGTTTTTGTTTTTTTCATAAATACAACATAAAA  300

seq1  GGTGGCAAAAGAATGCAAGTTAATCCCAAGCCCAGCAAATTAGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAAAGAATGCAAGTTAATCCCAAGCCCAGCAAATTAGGAAAAAA  350

seq1  AAAAAGTCACATTCAGAAAAATTTGGCAATTATGATATGATATAGGCCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCACATTCAGAAAAATTTGGCAATTATGATATGATATAGGCCGC  400

seq1  AATTCTACAACAGAGATAGGCCCATGAGACCCTGCATGGCAATTTAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACAACAGAGATAGGCCCATGAGACCCTGCATGGCAATTTAAATC  450

seq1  CCCCAATAGCAATGTGTATGTGGTCAAAGAGACTTGTACCACACTGCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATAGCAATGTGTATGTGGTCAAAGAGACTTGTACCACACTGCACA  500

seq1  GGAACACCTGCCACCCAGTGTTCAAGCCTGCTAAAACTTGCTTGGTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCTGCCACCCAGTGTTCAAGCCTGCTAAAACTTGCTTGGTTGGT  550

seq1  GTTCTTACAAAAGTAGAAAGCTGTACAAGTGAGGCAGTAATACAAAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACAAAAGTAGAAAGCTGTACAAGTGAGGCAGTAATACAAAATAT  600

seq1  ACGGGGTGCTTACAGATATAAAATCGTTTTAAGAAGTACTATGTATGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGTGCTTACAGATATAAAATCGTTTTAAGAAGTACTATGTATGACT  650

seq1  TGAGTAACTGAGCTAAGAAGTTCAACACCTTTATAAATAATGAACAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACTGAGCTAAGAAGTTCAACACCTTTATAAATAATGAACAATAG  700

seq1  ATATGTTTTGCATGAGGAACAAACACAGTGTTTTCTTTTCATAGCAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTGCATGAGGAACAAACACAGTGTTTTCTTTTCATAGCAGAGT  750

seq1  ACCTTTAAAGCCTCATGGTTTAGACTATCAGGCCAAATTATTTTCTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAAGCCTCATGGTTTAGACTATCAGGCCAAATTATTTTCTCTCA  800

seq1  CTTAAAAAAAAAAAATTGGTTCCGACTTAAAGTCATCAAGTCTGGTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAAAAATTGGTTCCGACTTAAAGTCATCAAGTCTGGTCAGA  850

seq1  ATCAACTCAGGCTAGCCGATGCAGACTCGTGCATTCAAAAAGCAGTCTTT  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCA-GCTAGCCGATGCAGACTCGTGCATTCAAAAAGCAGTCTTT  899

seq1  GCAGCTGGCCTCACAGATGCTCAGAGCCTGGGACCCTCCTAAGGCTGGGT  950
      ||||||||||||||||||||||||||||| ||||||||   |||||||||
seq2  GCAGCTGGCCTCACAGATGCTCAGAGCCT-GGACCCTC--TAGGCTGGGT  946

seq1  TCCATGGAGACAAGGAACTAGTAACTTCCACTCGGCACCTACCTCTAGTG  1000
      | ||||||||||  | |||||| ||||||||||||||| || ||||||||
seq2  T-CATGGAGACA--GGACTAGT-ACTTCCACTCGGCACTTA-CTCTAGTG  991

seq1  CCAATGGAAAAGAAGTTCACTGTCTTGCACAAGCTTGTTCTCTATCAAGT  1050
      |||   |||||||||||||||||| ||||| ||| ||||||||||| |||
seq2  CCA--TGAAAAGAAGTTCACTGTC-TGCAC-AGC-TGTTCTCTATC-AGT  1035

seq1  CTCCTTTTCCCTCAGGCAGACTAGACCCTTCCGGCCACTTCTCAGATGGC  1100
      |||    | ||||||   ||| |||||||||  | ||| ||||  |||  
seq2  CTC----TTCCTCAG--CGAC-AGACCCTTC--GGCACATCTCGAATG--  1074

seq1  CCCCCTGCCA-CCTCTATCATGTCCAACTTGCTCTACACACTAAT  1144
       ||||||||| |||||| ||||| |||| ||||| |||| |||||
seq2  ACCCCTGCCACCCTCTA-CATGT-CAAC-TGCTC-ACAC-CTAAT  1114

seq1: chr8_64200711_64201788
seq2: B6Ng01-123H16.g_68_1139 (reverse)

seq1  GATCCATCC--AGCTTTAAGCCATGTCTATCCCCTTTCTTCTCTCTTTAC  48
      |||||||||   ||||  ||||||| ||||||||||||||||||| ||||
seq2  GATCCATCCCAGGCTTAGAGCCATG-CTATCCCCTTTCTTCTCTC-TTAC  48

seq1  ACAGCCATAGTACAG-CATGCTACCCACTAGCACTAAACGGTGATATTGG  97
      ||||||||||||||| ||||||| ||||||||||| ||||||||||||||
seq2  ACAGCCATAGTACAGCCATGCTAACCACTAGCACT-AACGGTGATATTGG  97

seq1  CCTTAGTTGATGATCCCCTACCTCTGAAATATGGTAAATTCCATGTCTGT  147
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTAGTTGATGATCCCCTACCTCTG-AATATGGTAAATTCCATGTCTGT  146

seq1  CACCACACGAAAGCTCTTGAATTTCTTCCACCTGTCTGTCACTCCTTATA  197
      |||||||||||||||| |||| ||||||||||||||||||||||| ||||
seq2  CACCACACGAAAGCTC-TGAA-TTCTTCCACCTGTCTGTCACTCC-TATA  193

seq1  CCCAGGTCTGTCATTGATGGCTTCCTAGTGACTTCACCTTGGTTTTATTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCTGTCATTGATGGCTTCCTAGTGACTTCACCTTGGTTTTATTT  243

seq1  TCTATTGTTCTTTTTACAATAAAATCCTGTTTCTGTCAAAT-ATTCCGGG  296
      |||| ||||| |||||||||||||||||||||||||||||| ||||||||
seq2  TCTA-TGTTC-TTTTACAATAAAATCCTGTTTCTGTCAAATAATTCCGGG  291

seq1  GACTCTACACTGTTACATCGCCTCACAGGTTACTCTCCTACCCTTCGAGC  346
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACTCTACACTG-TACATCGCCTCACAGGTTACTCTCCTACCCTTCGAGC  340

seq1  CCACACCTTCCCTTCTTTGCAAGTCTCCTCTGGTCCTCTGCATTAATCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTTCCCTTCTTTGCAAGTCTCCTCTGGTCCTCTGCATTAATCCT  390

seq1  CATTACAAATATCTTCTCCCAGGCCAAGCCAAAGGCTTGATCAACAGACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAAATATCTTCTCCCAGGCCAAGCCAAAGGCTTGATCAACAGACA  440

seq1  CACTCCACTGACCATACAGCCGCTGAGTGTTGTCTAAACAAAGGAACGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACTGACCATACAGCCGCTGAGTGTTGTCTAAACAAAGGAACGGA  490

seq1  ATTGTGTCTGGTAAACTCTGAAATGAATGTGGAGTTTGTGCATCTGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCTGGTAAACTCTGAAATGAATGTGGAGTTTGTGCATCTGTTCT  540

seq1  GGCAGTAGATAGCTTTGTCTTCCAGGAAAAAGAAGATATAAACACACTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAGATAGCTTTGTCTTCCAGGAAAAAGAAGATATAAACACACTAT  590

seq1  TAGGGGGAAATGCTTCATGAAAATATACGGGGAGGTTTAAGAAGAGAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGAAATGCTTCATGAAAATATACGGGGAGGTTTAAGAAGAGAATG  640

seq1  ATGCCCATCGGGTGGATGGGCGGCCACTGTCAGCTATACATGCGTGCGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATCGGGTGGATGGGCGGCCACTGTCAGCTATACATGCGTGCGTG  690

seq1  CAGAATCTCACCCTCTAATTCAGCAAATGCACACTCTGCAGCCTGTTTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTCACCCTCTAATTCAGCAAATGCACACTCTGCAGCCTGTTTTA  740

seq1  ACATGGTTGCCAGCAAATCCTGCTTGATATATTTCTGAATAGCTGAGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTGCCAGCAAATCCTGCTTGATATATTTCTGAATAGCTGAGAAG  790

seq1  GGGGAAACAATCAGGAGAAGAATAATATTTTGGGACACTGAAAATTATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACAATCAGGAGAAGAATAATATTTTGGGACACTGAAAATTATAA  840

seq1  TAACCTCAAACTTTGTAGTCAATAAAGCTTTCTTTTTTAAAGTCTAACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCAAACTTTGTAGTCAATAAAGCTTTCTTTTTTAAAGTCTAACCT  890

seq1  CATTCATTCATTTACATATCACCTGTGGCTGCTTTTGCCTCACAGAGGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATTTACATATCACCTGTGGCTGCTTTTGCCTCACAGAGGAG  940

seq1  CAGGGAAGGAGGTTAAATACACTGACTGTTCCTTGCTGAAACTCACTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGAGGTTAAATACACTGACTGTTCCTTGCTGAAACTCACTTTG  990

seq1  GAGGAAAAGTTCTCCAGTGCCTGTTTTTTGGTTTTTCAAACTGTAGACCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAGTTCTCCAGTGCCTGTTTTTTGGTTTTTCAAACTGTAGACCT  1040

seq1  TGGGACAGCTGCCTCAGCACCATCTGGAATTC  1078
      ||||||||||||||||||||||||||||||||
seq2  TGGGACAGCTGCCTCAGCACCATCTGGAATTC  1072