BAC Information

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BAC

Clone NameB6Ng01-123I06
Chromosome8 (Build37)
Map Location 109,890,416 - 110,132,859
singlet/doubletdoublet
Overlap geneNfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
Upstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
Downstream geneLOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123I06.bB6Ng01-123I06.g
ACCDH926660DH926661
length971816
definitionDH926660|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I06, 5' end.DH926661|Mus musculus domesticus DNA, BAC clone: B6Ng01-123I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,890,416 - 109,891,409)(110,132,041 - 110,132,859)
sequence
gaattcattcccatgagatgaagtactacaagttggttttaggactaagg
aatcaaagatgtgagattaaggccaacctgggctacagaggaagaccctg
cccccaaaatgagttgatttaatgaaagcaccaattttagcattttcaga
agtagcagcattttgattatggttccttctctactctctttttaattctc
ctcttgttttccccattgcagtgttactgatgatccacaatatggaattc
ttgaacttacatagttgtagttacacacaaactatcagattaatgttctc
ttgttattcttatttggctaagcatatcaataactgctttttctgcttgt
ttggttatctttacaatactgaaagtcagatattgtcataaagaatcagt
cttacactgacttctagtgatactgtagagtagaaagcttattctgtgtg
taatcttagaaataatttttggagtaatatatgtgattatttaatttata
tgtgcatattgtttgtggctttttattttttagactacaaagagcattgg
atcaacccagcaaaccttagaaactatttctaacatagcggggggtgcac
ccttctcctcaccgtcgtcatcttcccacttaactcctgaaagtgagaat
cagcagcagcttcagcccaaggcatacaacccagagaccctgacaactat
ccagacacaggacatctcacagcccgggacctttcccgcagtttctgctg
ctagtcagctgcccagcagcgatgcactactgcagcaggaacacagtttt
cagacaagagaagctcagtccagagacacaatacagtagatacattggtt
aacttgtcacagttaactgaagcatcacagcagagcaatccccactacaa
gaacaagcacaaacgttacaggcagcagataccatcaaatatttttccat
cgccagcagtgtcaggcagct
gaattcatttcatcgctcgcctttaaccgccggacaaaatggcttctggt
gtggaactgtgtgataaatgtaccccctccagttctttattgcctctgta
aatcacaggactgacagcagttaataagaaaagcttttgagtggttttga
agtttggctttgtacaaataaagtctcatattaaagattttgctagtctt
caaggtgtacaaaaagcagtgtgcacagtctttccaagcttttaaccaca
ggtctcctttttttttttttttttttcttcagatttttgtacttcgggga
ggaaaaagaaagaaagaaagaaacccttccagacacacacgttggaaaaa
tacaaacaaattcaagtttaagcggcttcctatgcttggggtgttgccgg
tgctaacgaaatgacaaacttataggttgcataatctgaatcttcagcta
aataccagaaaagatgcgtggaagagaggttgttacgagagatttattag
tatgtgtctggacataattgtacctttacctcatttagccaaagcaaact
ttgggtccagtgtctagatggacagctctaaatcctgctgaattgatcag
ctgccagctcagtctcgagtaccgggtgctggaattctgaaaacatattt
cagagcataattggcagtaaagggaacggaatgggtacttcctcgcttga
gtggcccctttatccgtggagctccgatgccttccccccccccccccccg
ggaaagggttggactcctaagggcagattctattatctgaggggtatagg
ggacaagctgatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109890416_109891409
seq2: B6Ng01-123I06.b_46_1016

seq1  GAATTCATTCCCATGAGATGAAGTACTACAAGTTGGTTTTAGGACTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCATGAGATGAAGTACTACAAGTTGGTTTTAGGACTAAGG  50

seq1  AATCAAAGATGTGAGATTAAGGCCAACCTGGGCTACAGAGGAAGACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGATGTGAGATTAAGGCCAACCTGGGCTACAGAGGAAGACCCTG  100

seq1  CCCCCAAAATGAGTTGATTTAATGAAAGCACCAATTTTAGCATTTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAATGAGTTGATTTAATGAAAGCACCAATTTTAGCATTTTCAGA  150

seq1  AGTAGCAGCATTTTGATTATGGTTCCTTCTCTACTCTCTTTTTAATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGCATTTTGATTATGGTTCCTTCTCTACTCTCTTTTTAATTCTC  200

seq1  CTCTTGTTTTCCCCATTGCAGTGTTACTGATGATCCACAATATGGAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTTTCCCCATTGCAGTGTTACTGATGATCCACAATATGGAATTC  250

seq1  TTGAACTTACATAGTTGTAGTTACACACAAACTATCAGATTAATGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTACATAGTTGTAGTTACACACAAACTATCAGATTAATGTTCTC  300

seq1  TTGTTATTCTTATTTGGCTAAGCATATCAATAACTGCTTTTTCTGCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTCTTATTTGGCTAAGCATATCAATAACTGCTTTTTCTGCTTGT  350

seq1  TTGGTTATCTTTACAATACTGAAAGTCAGATATTGTCATAAAGAATCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATCTTTACAATACTGAAAGTCAGATATTGTCATAAAGAATCAGT  400

seq1  CTTACACTGACTTCTAGTGATACTGTAGAGTAGAAAGCTTATTCTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTGACTTCTAGTGATACTGTAGAGTAGAAAGCTTATTCTGTGTG  450

seq1  TAATCTTAGAAATAATTTTTGGAGTAATATATGTGATTATTTAATTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTAGAAATAATTTTTGGAGTAATATATGTGATTATTTAATTTATA  500

seq1  TGTGCATATTGTTTGTGGCTTTTTATTTTTTAGACTACAAAGAGCATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATATTGTTTGTGGCTTTTTATTTTTTAGACTACAAAGAGCATTGG  550

seq1  ATCAACCCAGCAAACCTTAGAAACTATTTCTAACATAGCGGGGGGTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCCAGCAAACCTTAGAAACTATTTCTAACATAGCGGGGGGTGCAC  600

seq1  CCTTCTCCTCACCGTCGTCATCTTCCCACTTAACTCCTGAAAGTGAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCTCACCGTCGTCATCTTCCCACTTAACTCCTGAAAGTGAGAAT  650

seq1  CAGCAGCAGCTTCAGCCCAAGGCATACAACCCAGAGACCCTGACAACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCTTCAGCCCAAGGCATACAACCCAGAGACCCTGACAACTAT  700

seq1  CCAGACACAGGACATCTCACAGCCCGGGACCTTTCCCGCAGTTTCTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACAGGACATCTCACAGCCCGGGACCTTTCCCGCAGTTTCTGCTG  750

seq1  CTAGTCAGCTGCCCAGCAGCGATGCACTACTGCAGCAGGCAACACAG-TT  799
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CTAGTCAGCTGCCCAGCAGCGATGCACTACTGCAGCAGG-AACACAGTTT  799

seq1  TCAGACAAGAGAAGCTCAGTCCAGAGACACAATACAGTCAGATACAGTGG  849
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TCAGACAAGAGAAGCTCAGTCCAGAGACACAATACAGT-AGATACATTGG  848

seq1  TTAACTTGTCACAGTTAACTGAAGCATCACAGCAGCAGCAATCCCCACTA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAACTTGTCACAGTTAACTGAAGCATCACAGCAG-AGCAATCCCCACTA  897

seq1  CAAGAACAAGCACAAACGTTACA-GCAGCAGATACCATCAAATATTTTTC  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAGAACAAGCACAAACGTTACAGGCAGCAGATACCATCAAATATTTTTC  947

seq1  CATCGCCAAGCAGTGTCAGCCAGCTCCAGAGTACTATTCAGCAGCT  994
      ||||||| ||||||||||| |||||                     
seq2  CATCGCC-AGCAGTGTCAGGCAGCT---------------------  971

seq1: chr8_110132041_110132859
seq2: B6Ng01-123I06.g_69_884 (reverse)

seq1  GTGCCTCAGCTTTGTCCCTATAACCCCTCAGATAATAGAATCTGCCCTTT  50
      |||| |||||||   |||||| ||||||||||||||||||||||||| ||
seq2  GTGCATCAGCTTGTCCCCTAT-ACCCCTCAGATAATAGAATCTGCCC-TT  48

seq1  AGGAGTCCAACCCTTTCCCGGGGGGGGGGGGGGGGGAAGGCATCTGGAGC  100
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  AGGAGTCCAACCCTTTCCC-GGGGGGGGGGGGGGGGAAGGCATC-GGAGC  96

seq1  TCCACGGATAAAGGGGCCACTC-AGCGAGGAAGTACCCATTCCGTTCCCT  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCACGGATAAAGGGGCCACTCAAGCGAGGAAGTACCCATTCCGTTCCCT  146

seq1  TTACTGCCAATTATGCTCTGAAATATGTTTTCAGAATTCCAGCACCCGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCAATTATGCTCTGAAATATGTTTTCAGAATTCCAGCACCCGGT  196

seq1  ACTCGAGACTGAGCTGGCAGCTGATCAATTCAGCAGGATTTAGAGCTGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGACTGAGCTGGCAGCTGATCAATTCAGCAGGATTTAGAGCTGTC  246

seq1  CATCTAGACACTGGACCCAAAGTTTGCTTTGGCTAAATGAGGTAAAGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGACACTGGACCCAAAGTTTGCTTTGGCTAAATGAGGTAAAGGTA  296

seq1  CAATTATGTCCAGACACATACTAATAAATCTCTCGTAACAACCTCTCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGTCCAGACACATACTAATAAATCTCTCGTAACAACCTCTCTTC  346

seq1  CACGCATCTTTTCTGGTATTTAGCTGAAGATTCAGATTATGCAACCTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATCTTTTCTGGTATTTAGCTGAAGATTCAGATTATGCAACCTATA  396

seq1  AGTTTGTCATTTCGTTAGCACCGGCAACACCCCAAGCATAGGAAGCCGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCATTTCGTTAGCACCGGCAACACCCCAAGCATAGGAAGCCGCT  446

seq1  TAAACTTGAATTTGTTTGTATTTTTCCAACGTGTGTGTCTGGAAGGGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGAATTTGTTTGTATTTTTCCAACGTGTGTGTCTGGAAGGGTTT  496

seq1  CTTTCTTTCTTTCTTTTTCCTCCCCGAAGTACAAAAATCTGAAGAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTTTCCTCCCCGAAGTACAAAAATCTGAAGAAAAAA  546

seq1  AAAAAAAAAAAAAGGAGACCTGTGGTTAAAAGCTTGGAAAGACTGTGCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGGAGACCTGTGGTTAAAAGCTTGGAAAGACTGTGCAC  596

seq1  ACTGCTTTTTGTACACCTTGAAGACTAGCAAAATCTTTAATATGAGACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTTTGTACACCTTGAAGACTAGCAAAATCTTTAATATGAGACTT  646

seq1  TATTTGTACAAAGCCAAACTTCAAAACCACTCAAAAGCTTTTCTTATTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTACAAAGCCAAACTTCAAAACCACTCAAAAGCTTTTCTTATTAA  696

seq1  CTGCTGTCAGTCCTGTGATTTACAGAGGCAATAAAGAACTGGAGGGGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCAGTCCTGTGATTTACAGAGGCAATAAAGAACTGGAGGGGGTA  746

seq1  CATTTATCACACAGTTCCACACCAGAAGCCATTTTGTCCGGCGGTTAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCACACAGTTCCACACCAGAAGCCATTTTGTCCGGCGGTTAAAG  796

seq1  GCGAGCGATGAAATGAATTC  819
      ||||||||||||||||||||
seq2  GCGAGCGATGAAATGAATTC  816