BAC Information

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BAC

Clone NameB6Ng01-124M23
Chromosome8 (Build37)6 (Build37)
Map Location 97,135,773 - 97,136,79976,101,254 - 76,101,311
singlet/doubletsingletsinglet
Overlap geneRspry1
Upstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik
Downstream geneArl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M23.bB6Ng01-124M23.g
ACCDH927618DH927619
length1,023568
definitionDH927618|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M23, 5' end.DH927619|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,135,773 - 97,136,799)(76,101,254 - 76,101,311)
sequence
gaattcactaagatgtccagacccaatttggcattgaactcctggctcaa
gtgatcctcctgctcagtctccaagtagctttgatcatgggcataatgca
gtctagtgaaatggatatttttttaaagtttcaatgattttaacactaga
gattttaacacttttctttctttccttttctttattttgtttttattttt
tcaaagcagttctcactatgtagctttggcttttctggaactcaggctgg
cctcctgcctctgcctccaaaatgctagaattaaaagtgtacaccactac
accagctagagactttttcttagcataaagctgtaatgaccaggtgtgag
gcaggtggtaggagccatgaagtgttatacagtgttcatcactcatgaaa
catacaaagaaaagagaagagcagttagcttaaaaaattcatgaaatggc
catattctttaggcttatagccatggtacatgcatatgcaaagtataaac
tccttagtttccttcagtattgcaaatgcttagcttctttcttagaagct
acttgagacatatttccataggaaagaagttctgactacttattgtttgg
ctactaaggctaaacaattacacttcaaacaactttgttttgcctttaaa
gaaaatgtgttatcttcccaaagaccactgtttgaagacagtaccctcag
ctacatattttacacaggccaccaggggccacctacagcacaagcgcagt
acatggacatgacaatcagaccgccctgggtacaagtctcagttctgcta
tcctcacgggcactccctccaaggaatctgaccatggatgcactttacaa
gagggaagaaggagcaattattacctcataataactccaaagactcaaaa
tgctttccaggatgcagccacgcctgtgactgcttaaagctccctaggtg
gttctgatggcagccagtctgggaaatcacctattagtactaccacagaa
ctgccatctactgatgaattatc
tattaggctactagtaaagcaggagagatttctgagtagccattgaatat
cagagagagagaagcgggtgacagggatctattctcctaagatttgcagg
gtgctatccttgacatttctaattataatagtgagtgtatctatctcact
tataattctaggtgcaccgcctactggtgtgtggagccattccggcactc
cctggggctgatatggggctcccataagtgtggggcaaaaattgaagata
agaaactatacgggcattgtcaggtcatatctagcaagtgccttgtcttt
tagggtcatattgacaaaatttagaacctggttgtctcagagaggagtgt
tcacggggaggaggggcttctatttccttttaaaaagtcaaagagaggct
ggaaattgcttgtgggaagggagagcccagggtcaaagccagttaaggtt
tccctaaaaactttggagggaggtgagagttttggggggaagaacagtgt
gggtttaacgtgagtttaacttgtaattttagtttcaaatttcacctttt
ttttttgaataaaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97135773_97136799
seq2: B6Ng01-124M23.b_47_1069 (reverse)

seq1  GATAATTCATTCAGTAGATGGCAGGTTCTGTGGTAGGTACTAATA-GTGA  49
      ||||||||| ||||||||||||| ||||||||||| ||||||||| ||||
seq2  GATAATTCA-TCAGTAGATGGCA-GTTCTGTGGTA-GTACTAATAGGTGA  47

seq1  TTT-CCAGACTTGGCTGCCATCAGAACCACCTAGGGAGCTTTTAAGCAGT  98
      ||| |||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TTTCCCAGAC-TGGCTGCCATCAGAACCACCTAGGGAGC-TTTAAGCAGT  95

seq1  CACAGGCGTGGGCTGCATCCTGGAAAGCATTTTGAGTCTTTGGAGTTATT  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCGT-GGCTGCATCCTGGAAAGCATTTTGAGTCTTTGGAGTTATT  144

seq1  ATGAGGTAATAATTGCTCCTTCTTCCCTCTTGTAAAGTGCATCCATGGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAATAATTGCTCCTTCTTCCCTCTTGTAAAGTGCATCCATGGTC  194

seq1  AGATTCCTTGGAGGGAGTGCCCGTGAGGATAGCAGAACTGAGACTTGTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTTGGAGGGAGTGCCCGTGAGGATAGCAGAACTGAGACTTGTAC  244

seq1  CCAGGGCGGTCTGATTGTCATGTCCATGTACTGCGCTTGTGCTGTAGGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCGGTCTGATTGTCATGTCCATGTACTGCGCTTGTGCTGTAGGTG  294

seq1  GCCCCTGGTGGCCTGTGTAAAATATGTAGCTGAGGGTACTGTCTTCAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGTGGCCTGTGTAAAATATGTAGCTGAGGGTACTGTCTTCAAAC  344

seq1  AGTGGTCTTTGGGAAGATAACACATTTTCTTTAAAGGCAAAACAAAGTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTTTGGGAAGATAACACATTTTCTTTAAAGGCAAAACAAAGTTG  394

seq1  TTTGAAGTGTAATTGTTTAGCCTTAGTAGCCAAACAATAAGTAGTCAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTGTAATTGTTTAGCCTTAGTAGCCAAACAATAAGTAGTCAGAA  444

seq1  CTTCTTTCCTATGGAAATATGTCTCAAGTAGCTTCTAAGAAAGAAGCTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCTATGGAAATATGTCTCAAGTAGCTTCTAAGAAAGAAGCTAA  494

seq1  GCATTTGCAATACTGAAGGAAACTAAGGAGTTTATACTTTGCATATGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCAATACTGAAGGAAACTAAGGAGTTTATACTTTGCATATGCAT  544

seq1  GTACCATGGCTATAAGCCTAAAGAATATGGCCATTTCATGAATTTTTTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGGCTATAAGCCTAAAGAATATGGCCATTTCATGAATTTTTTAA  594

seq1  GCTAACTGCTCTTCTCTTTTCTTTGTATGTTTCATGAGTGATGAACACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTGCTCTTCTCTTTTCTTTGTATGTTTCATGAGTGATGAACACTG  644

seq1  TATAACACTTCATGGCTCCTACCACCTGCCTCACACCTGGTCATTACAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACTTCATGGCTCCTACCACCTGCCTCACACCTGGTCATTACAGC  694

seq1  TTTATGCTAAGAAAAAGTCTCTAGCTGGTGTAGTGGTGTACACTTTTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTAAGAAAAAGTCTCTAGCTGGTGTAGTGGTGTACACTTTTAAT  744

seq1  TCTAGCATTTTGGAGGCAGAGGCAGGAGGCCAGCCTGAGTTCCAGAAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATTTTGGAGGCAGAGGCAGGAGGCCAGCCTGAGTTCCAGAAAAG  794

seq1  CCAAAGCTACATAGTGAGAACTGCTTTGAAAAAATAAAAACAAAATAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTACATAGTGAGAACTGCTTTGAAAAAATAAAAACAAAATAAAG  844

seq1  AAAAGGAAAGAAAGAAAAGTGTTAAAATCTCTAGTGTTAAAATCATTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGAAAGAAAAGTGTTAAAATCTCTAGTGTTAAAATCATTGAA  894

seq1  ACTTTAAAAAAATATCCATTTCACTAGACTGCATTATGCCCATGATCAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAAAATATCCATTTCACTAGACTGCATTATGCCCATGATCAAA  944

seq1  GCTACTTGGAGACTGAGCAGGAGGATCACTTGAGCCAGGAGTTCAATGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGGAGACTGAGCAGGAGGATCACTTGAGCCAGGAGTTCAATGCC  994

seq1  AAATTGGGTCTGGACATCTTAGTGAATTC  1027
      |||||||||||||||||||||||||||||
seq2  AAATTGGGTCTGGACATCTTAGTGAATTC  1023

seq1: chr6_76101254_76101311
seq2: B6Ng01-124M23.g_583_640

seq1  TGAGTTTAACTTGTAATTTTAGTTTCAAATTTCACCTTTATTTTTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TGAGTTTAACTTGTAATTTTAGTTTCAAATTTCACCTTTTTTTTTTGAAT  50

seq1  AAAATCCC  58
      ||||||||
seq2  AAAATCCC  58