BAC Information

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BAC

Clone NameB6Ng01-125I03
Chromosome8 (Build37)1 (Build37)
Map Location 39,814,996 - 39,815,622174,064,895 - 174,066,006
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125I03.bB6Ng01-125I03.g
ACCDH928124DH928125
length9031,099
definitionDH928124|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I03, 5' end.DH928125|Mus musculus domesticus DNA, BAC clone: B6Ng01-125I03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,814,996 - 39,815,622)(174,064,895 - 174,066,006)
sequence
gaattcatgcagttgaatccttctcaacagtctgctttacgggaaccttt
attaccgtgacccgcagttctggttctggaatgagagatcttccttgcgc
cagtcccgagttttcttgtattttttttttttttttttcgtcccggattt
tttctcgtcccggattttctcttcccgtcccgggtttcggcaccaattgt
taataaacgcgttctcacgaccggccaggaaagatgcaacaaaccagaat
cttctgcggcaaagctttattgcttacatcttcaggagccagagtgcaag
agagcaagcaagcaagagagaaaaaggtggcgaaaccccatcccttttta
aggagaattatcctccacctaggacgtattactccctgattggctgcagc
ccatcggcccagttgtcatcacgggaaaggcagaacacatggtgggaaaa
ctgcccctgcatgtgtgcagactatgtttaccacttagaacacagctgtc
agtgccatcttataatggcaaatgtgagggcggctcctcacagtcttcac
ttcctagcgcccacatccagagactcacaaatacctgtaactctagatca
aggaatagctgacaccctcttctggcccccgatggcacctgcaaacatac
agtgtatacacctacacttgagcacacacataccggacttttgatgtcag
cctttgaaacccagagttaggaaataacgctttaaaacatggaaacggtg
gctggggagatgtgctgaagagatgcgtgtcaggaaagtgcttgccacat
gaacatgaaggacctgggttcagaacccacccaagcacacatgtgaaaga
ccaggtatggctggatgcatttgggggtcctgacacaggggagatgcaca
cgg
gaattctcttaagggaaaggaattttgcacttagccatggtcgggttgga
agcaaagccttgggcttttcctgtccctaggtgctgagccccaatccccc
tttcctcctgagaactcatgttgctgccctggttctttctacagctctgg
gatttagggggagccaactcttggccttcctttgctccctgactgtcctt
acgtcctctctgtttagagtcttatttattctgcccttttaaccagtgct
gtgatggatgaaggccaatcttgtttcctttcatctagtacctggaccat
tctccctagacccttgccttcctccctggccaacacatacttgcagtgtc
agatctggtacatgaatggccattctacccagataggttttagcttatat
ataggacatcagattccctggaatccttggttcaggaaggtgcttgggaa
aggggtgtagccagaatattttttccctgcaagccctatggggtagtatc
taataaatattctgagcaagtgtgtgggttatttttcatccaggtctatt
tctaatcttccctagtttctataaactgcagagtgagatgtgttaggaga
tggatagttctgtatagtgttgttaggctctaccatggcccagccctcca
gctcagcaaaagaatactgtcttcgtctccttggcacttatttcagtctt
aacgttttacgatatagctgatgttagtgattgatatattatcaacatgt
tttctaaattatctaactttgaatcaacctgctttttcacagtggttcta
agcaccatggttgccatattttttatggatattcttttaggccacctagc
tagttcacttggaaaataacgttttaaaaatatatttttatttatctttg
gattttatacatgtatacaatgtatcctgatcatatcaccctcccaccca
cccaccccaactgctggataatactttggcaagaagaaatcacatttatc
atttgagtcactcgagttcctacatcatttcccctggctaaaaccacatt
taagatgcaacatattctatggaaatgtgcttgcggccccgtctgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39814996_39815622
seq2: B6Ng01-125I03.b_49_591 (reverse)

seq1  CTGTGGGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCT  50
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGTGAGGAGCCGCCCTCACATTTGCCATTATAAGATGGCACTGACAGCT  50

seq1  GTGTTCTAAGTAGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCC  100
      ||||||||||| ||||||||| ||||||||| ||||||||||||||||||
seq2  GTGTTCTAAGTGGTAAACATAGTCTGCACACATGCAGGGGCAGTTTTCCC  100

seq1  GCCATGTGTTCTGCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAG  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGTTCTGCCTTTCCCGTGATGACAACTGGGCCGATGGGCTGCAG  150

seq1  CCAATCAGGGAGTGATACGTCCTAGGCGAAGGATAACTCTCC-TAATTAG  199
      ||||||||||||| |||||||||||| | ||||||| ||||| |||  ||
seq2  CCAATCAGGGAGTAATACGTCCTAGGTGGAGGATAATTCTCCTTAAAAAG  200

seq1  GGACGGGGTTTCGC------TTTCGTTTTTGGGGGTTTTGAGTTTAGCAC  243
      ||| ||||||||||      ||||  | |||   | ||    | | ||||
seq2  GGATGGGGTTTCGCCACCTTTTTCTCTCTTGCTTGCTTGCTCTCTTGCAC  250

seq1  TCTTGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCTGG  293
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCGCAGAAGATTCTGG  300

seq1  TTTGTTGTGTTCTTCCTGGCCGGTCGTGAGAAAGCAT---GCAAGAGTTG  340
      |||||||  |  |||||||||||||||||||| || |     || | |||
seq2  TTTGTTGCATCTTTCCTGGCCGGTCGTGAGAACGCGTTTATTAACAATTG  350

seq1  GTGCCGAAACCCGGGACGAGAAAACCTGGGACGAG-AAATCCGGGACGAG  389
      |||||||||||||||||          |||| ||| ||||||||||||||
seq2  GTGCCGAAACCCGGGAC----------GGGAAGAGAAAATCCGGGACGAG  390

seq1  AAAACCCGGGAAGAAAGAACCTGGGACGAAAAAAACCCGGGACAAGAAAA  439
      ||||             || | |||||||||||||      | || ||||
seq2  AAAA-------------AATCCGGGACGAAAAAAA-----AAAAAAAAAA  422

seq1  CTCGGGACGGGACGAGAAGACCCGGGATGAGAAGACCTGGGACGAGAAGA  489
       |                                                
seq2  AT------------------------------------------------  424

seq1  CCTGGGACGAGAAAACCTGGGAAGGTTACCATCACCGGCGCAAGGAAGAT  539
            || |||||||  |||            || ||||||||||||||
seq2  ------ACAAGAAAACTCGGG------------ACTGGCGCAAGGAAGAT  456

seq1  CCCTCATTCCGGAACCAGAACTGCGGGTCATGGTAATGAAGTGTTCCCGT  589
      | |||||||| ||||||||||||||||||| |||||| ||| ||||||||
seq2  CTCTCATTCCAGAACCAGAACTGCGGGTCACGGTAATAAAG-GTTCCCGT  505

seq1  AAAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  627
      ||| |||||||||||||||||||||||||| |||||||
seq2  AAAGCAGACTGTTGAGAAGGATTCAACTGCATGAATTC  543

seq1: chr1_174064895_174066006
seq2: B6Ng01-125I03.g_69_1167

seq1  GAATTCTCTTAAGGGAAAGGAATTTTGCACTTAGCCATGGTCGGGTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAGGGAAAGGAATTTTGCACTTAGCCATGGTCGGGTTGGA  50

seq1  AGCAAAGCCTTGGGCTTTTCCTGTCCCTAGGTGCTGAGCCCCAATCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCTTGGGCTTTTCCTGTCCCTAGGTGCTGAGCCCCAATCCCCC  100

seq1  TTTCCTCCTGAGAACTCATGTTGCTGCCCTGGTTCTTTCTACAGCTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTGAGAACTCATGTTGCTGCCCTGGTTCTTTCTACAGCTCTGG  150

seq1  GATTTAGGGGGAGCCAACTCTTGGCCTTCCTTTGCTCCCTGACTGTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGGGGAGCCAACTCTTGGCCTTCCTTTGCTCCCTGACTGTCCTT  200

seq1  ACGTCCTCTCTGTTTAGAGTCTTATTTATTCTGCCCTTTTAACCAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCTCTCTGTTTAGAGTCTTATTTATTCTGCCCTTTTAACCAGTGCT  250

seq1  GTGATGGATGAAGGCCAATCTTGTTTCCTTTCATCTAGTACCTGGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGATGAAGGCCAATCTTGTTTCCTTTCATCTAGTACCTGGACCAT  300

seq1  TCTCCCTAGACCCTTGCCTTCCTCCCTGGCCAACACATACTTGCAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAGACCCTTGCCTTCCTCCCTGGCCAACACATACTTGCAGTGTC  350

seq1  AGATCTGGTACATGAATGGCCATTCTACCCAGATAGGTTTTAGCTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGTACATGAATGGCCATTCTACCCAGATAGGTTTTAGCTTATAT  400

seq1  ATAGGACATCAGATTCCCTGGAATCCTTGGTTCAGGAAGGTGCTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACATCAGATTCCCTGGAATCCTTGGTTCAGGAAGGTGCTTGGGAA  450

seq1  AGGGGTGTAGCCAGAATATTTTTTCCCTGCAAGCCCTATGGGGTAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGTAGCCAGAATATTTTTTCCCTGCAAGCCCTATGGGGTAGTATC  500

seq1  TAATAAATATTCTGAGCAAGTGTGTGGGTTATTTTTCATCCAGGTCTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATATTCTGAGCAAGTGTGTGGGTTATTTTTCATCCAGGTCTATT  550

seq1  TCTAATCTTCCCTAGTTTCTATAAACTGCAGAGTGAGATGTGTTAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTCCCTAGTTTCTATAAACTGCAGAGTGAGATGTGTTAGGAGA  600

seq1  TGGATAGTTCTGTATAGTGTTGTTAGGCTCTACCATGGCCCAGCCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGTTCTGTATAGTGTTGTTAGGCTCTACCATGGCCCAGCCCTCCA  650

seq1  GCTCAGCAAAAGAATACTGTCTTCGTCTCCTTGGCACTTATTTCAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAAAAGAATACTGTCTTCGTCTCCTTGGCACTTATTTCAGTCTT  700

seq1  AACGTTTTACGATATAGCTGATGTTAGTGATTGATATATTATCAACATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTTACGATATAGCTGATGTTAGTGATTGATATATTATCAACATGT  750

seq1  TTTCTAAATTATCTAACTTTGAATCAACCTGCTTTTTCACAGTGGTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATTATCTAACTTTGAATCAACCTGCTTTTTCACAGTGGTTCTA  800

seq1  AGCACCATGGTTGCCATATATTTTATGGATATTCTTTTAGGCCACCTAGC  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCACCATGGTTGCCATATTTTTTATGGATATTCTTTTAGGCCACCTAGC  850

seq1  TAGTTCACTTGGAAAATAACGTTTTAAAAATATATTTTTTATTTATTCTT  900
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TAGTTCACTTGGAAAATAACGTTTTAAAAATATA-TTTTTATTTA-TCTT  898

seq1  TGGAATTTTATACATGTATACAATGTATCCTGATCATATCCACCCTCCCA  950
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGG-ATTTTATACATGTATACAATGTATCCTGATCATAT-CACCCTCCCA  946

seq1  CCCCACCCCACCCCACCTGCTGGAAAATAACTTTGGCAAGAAGAAATTCA  1000
      |||   ||||||||| |||||||| ||| ||||||||||||||||| |||
seq2  CCC--ACCCACCCCAACTGCTGGATAAT-ACTTTGGCAAGAAGAAA-TCA  992

seq1  CATTTATCATTTGAGTCACTTCGAGTTCGTAACATCATTTCCCCTGGGCT  1050
      ||||||||||||||||||| |||||||| | |||||||||||||| ||||
seq2  CATTTATCATTTGAGTCAC-TCGAGTTCCT-ACATCATTTCCCCT-GGCT  1039

seq1  AAAACCACATTTAAGGATGCAACATATTCTATGGAAATGTGCTTGCGGCC  1100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAACCACATTTAA-GATGCAACATATTCTATGGAAATGTGCTTGCGGCC  1088

seq1  TCGGTCTGGGAA  1112
       | |||||||||
seq2  -CCGTCTGGGAA  1099