BAC Information

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BAC

Clone NameB6Ng01-125K15
Chromosome8 (Build37)
Map Location 27,347,678 - 27,468,367
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
Downstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K15.bB6Ng01-125K15.g
ACCDH928237DH928238
length1,1241,078
definitionDH928237|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K15, 5' end.DH928238|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,347,678 - 27,348,821)(27,467,275 - 27,468,367)
sequence
gaattctctccttcggcttctgcactttatactggagatgtgcatgcggt
caacagagagcagtgctatatgtgtgtcatcttagccaccccttacaagc
cattgagcagcctgattgtggtggacactgaaactatcatggctaccccc
aacacccagtccctggagataatcttccatgcccagatgccggtagtgcc
agaacaactccggaggagaagagcctaggaaggatgagatgaggaaagat
attaaatcccccaggagtaatttttttatgaacatgggttgggccagctg
tcttctgaggctttccaactctggtaatacgatggtgggaatatcacctg
caaccatttcctctggaattacaaatcaaattaaaaccctgatttttggt
agacggtgtttggctcttggaaggaacgctgtcaacctagatgagaaaaa
tttatttaaatatgtttttatgtttatatacaaacttacatgtactgcat
gctttgttaggtaaatagttaatagtacgattacttatgactttttcaga
catccctcctttctccatccttctccctaattggagtcccccttttctct
gtttccccaacctaatcacttgtatcctgatatgtctcttccccacccac
ctaccccatgctcccctttcacttgtttagtttctaaagttatgggcagg
atctgtcctcacatctgacgatttggagctaggaacctccaaggagaaag
aacatgccacatttgtcttcctggatctgggttactcaatatgatctttt
ctagttccatccatttaccaggtcagctcctggagaagaagcctatagct
tttttttgttttgttttgttttgttttcctccttaggatgctttcaatat
gtgagttacagaagattatcttcaagtttccttcaacctatagactaacg
actgccccgccctgcccacatggctttagattagagaacttattgagaga
gagcaaggtctgtcagtgaaaccctctctttgccccttctctatcctcta
gcatttgattaatactaaccccattagatggtacggttctatggagtcga
gccaacaaatctacagttgactcc
gaattcagccgggcagtggtggcgcatgcctttaatcccagcactcagaa
agcagagacagtcagatttctgagttcgaggccagcctggtctagagagt
gagttccgggacagccagggatatgcagaaaaaccctgtctcgaaaaaac
aaaaaacaaaaaaacaaacaaaaaatgtgaattcatagactgtttgccca
tcctccatccatcaatatggtttctctccttgcaaagctccaagttcttg
ccccttccttgttagagcctagtcatgttcaggtggtaccctgcaaagct
cgtccgttgtctagcatctaggcctctcagtcagcaggcaggaggagctc
tacttcctggcctgacatttctggactctgatcatgccaggtgtgggcac
cactcagaaaattagaagcaaaagcagttcctggcaatgctcacccgaga
tatacctgctgtaacagagggtggaggtctgataattaaaagcaaacata
aaattcaggcatgtagttggaaaaggaagggtcttactgagcccccataa
aagccaagagaaacgtcctgggtgcttagcactaggggattattcagcgc
tgggcacaagagaggacgagggggttcatgagagagctaaaggttttgtt
tacttcctgacaggaagactttggtttttaagggaggggctcatgtgagt
aaataagagttcattattaagttgacccaagaatgcctttaccttgcaac
gatgatgctgaagctggggcatccagggtcattggccttacgcacacaca
cacacacacacacacacacaccccggctggagatcctggaccatggttca
ctttcctcacctcaggctggactcaagagtgatcatttcaatcttagctg
agctgtgtggcaagcctccctgcttctatgcctcaggaagtcgcatgagt
tgttcagccttgcacagtgaatctgacagaaagagcttttttgtggccgt
gttcggaggattcatcctgctttcatggccatctctcaacatttccaaaa
tgtgctctgtgaagtacccctagtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_27347678_27348821
seq2: B6Ng01-125K15.b_49_1172

seq1  GAATTCTCTCCTTCGGCTTCTGCACTTTATACTGGAGATGTGCATGCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTCGGCTTCTGCACTTTATACTGGAGATGTGCATGCGGT  50

seq1  CAACAGAGAGCAGTGCTATATGTGTGTCATCTTAGCCACCCCTTACAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGAGCAGTGCTATATGTGTGTCATCTTAGCCACCCCTTACAAGC  100

seq1  CATTGAGCAGCCTGATTGTGGTGGACACTGAAACTATCATGGCTACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCAGCCTGATTGTGGTGGACACTGAAACTATCATGGCTACCCCC  150

seq1  AACACCCAGTCCCTGGAGATAATCTTCCATGCCCAGATGCCGGTAGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCAGTCCCTGGAGATAATCTTCCATGCCCAGATGCCGGTAGTGCC  200

seq1  AGAACAACTCCGGAGGAGAAGAGCCTAGGAAGGATGAGATGAGGAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACTCCGGAGGAGAAGAGCCTAGGAAGGATGAGATGAGGAAAGAT  250

seq1  ATTAAATCCCCCAGGAGTAATTTTTTTATGAACATGGGTTGGGCCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCCCCCAGGAGTAATTTTTTTATGAACATGGGTTGGGCCAGCTG  300

seq1  TCTTCTGAGGCTTTCCAACTCTGGTAATACGATGGTGGGAATATCACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAGGCTTTCCAACTCTGGTAATACGATGGTGGGAATATCACCTG  350

seq1  CAACCATTTCCTCTGGAATTACAAATCAAATTAAAACCCTGATTTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTTCCTCTGGAATTACAAATCAAATTAAAACCCTGATTTTTGGT  400

seq1  AGACGGTGTTTGGCTCTTGGAAGGAACGCTGTCAACCTAGATGAGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTGTTTGGCTCTTGGAAGGAACGCTGTCAACCTAGATGAGAAAAA  450

seq1  TTTATTTAAATATGTTTTTATGTTTATATACAAACTTACATGTACTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAAATATGTTTTTATGTTTATATACAAACTTACATGTACTGCAT  500

seq1  GCTTTGTTAGGTAAATAGTTAATAGTACGATTACTTATGACTTTTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTAGGTAAATAGTTAATAGTACGATTACTTATGACTTTTTCAGA  550

seq1  CATCCCTCCTTTCTCCATCCTTCTCCCTAATTGGAGTCCCCCTTTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCTTTCTCCATCCTTCTCCCTAATTGGAGTCCCCCTTTTCTCT  600

seq1  GTTTCCCCAACCTAATCACTTGTATCCTGATATGTCTCTTCCCCACCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCCAACCTAATCACTTGTATCCTGATATGTCTCTTCCCCACCCAC  650

seq1  CTACCCCATGCTCCCCTTTCACTTGTTTAGTTTCTAAAGTTATGGGCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCATGCTCCCCTTTCACTTGTTTAGTTTCTAAAGTTATGGGCAGG  700

seq1  ATCTGTCCTCACATCTGACGATTTGGAGCTAGGAACCTCCAAGGAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTCACATCTGACGATTTGGAGCTAGGAACCTCCAAGGAGAAAG  750

seq1  AACATGCCACATTTGTCTTCCTGGATCTGGGTTACTCAATATGATCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCACATTTGTCTTCCTGGATCTGGGTTACTCAATATGATCTTTT  800

seq1  CTAGTTCCATCCATTTACCAGGCCAGCTCCTGGAGAAGAAGCCTATAGC-  849
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  CTAGTTCCATCCATTTACCAGGTCAGCTCCTGGAGAAGAAGCCTATAGCT  850

seq1  TTTTTTTGTTTTGTTTTGTTTTGTTTTCCTCCTTAGGATGCTTTCAATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTTTTGTTTTGTTTTGTTTTCCTCCTTAGGATGCTTTCAATAT  900

seq1  GTGAGTTACAGAAGATTATCTTCAAGTTTCCTTCAAACCTATAGACTAAC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGAGTTACAGAAGATTATCTTCAAGTTTCCTTC-AACCTATAGACTAAC  949

seq1  GACTGCCCCGCCCTGCCCCACCTTGGCTTTAGATTAGAAGAACATATTGA  999
      ||||||||||||||||||   | |||||||||||||| ||||| ||||||
seq2  GACTGCCCCGCCCTGCCC--ACATGGCTTTAGATTAG-AGAACTTATTGA  996

seq1  GAGAGAAGCAGGGTCTGTTCAAGGTGGAAACCCTCTCTTTGCCCCTTCTC  1049
      ||||| |||| |||||| |||  || ||||||||||||||||||||||||
seq2  GAGAG-AGCAAGGTCTG-TCA--GT-GAAACCCTCTCTTTGCCCCTTCTC  1041

seq1  TATTCCTCTTAAGCATTTGATTTAATAACTAACCCCATTAGATGGGTAAC  1099
      || ||||||  ||||||||| ||||| |||||||||||||||| ||||  
seq2  TA-TCCTCT--AGCATTTGA-TTAAT-ACTAACCCCATTAGAT-GGTA--  1083

seq1  CAGTTCCTATGGAGTCGAAGCAAACAAATCTACCAGTTGGACTCC  1144
      | ||| ||||||||||| ||| |||||||||| ||||| ||||||
seq2  CGGTT-CTATGGAGTCG-AGCCAACAAATCTA-CAGTT-GACTCC  1124

seq1: chr8_27467275_27468367
seq2: B6Ng01-125K15.g_66_1143 (reverse)

seq1  CATCAACTAGGCGTTACTTCACAGAGCACATTTTTGGGAAATGGTGGAAG  50
      |||| |||||| | ||||||||||||||||||||  ||||||| ||  ||
seq2  CATC-ACTAGG-GGTACTTCACAGAGCACATTTT--GGAAATGTTG--AG  44

seq1  AGATTGGCCATGAAAGGCAGGATGAACTCCTCCGGAACACGGGCACAAAA  100
      ||| ||||||||||| |||||||||| |||||| |||||||| |||||||
seq2  AGA-TGGCCATGAAA-GCAGGATGAA-TCCTCC-GAACACGGCCACAAAA  90

seq1  CAGCTCTCTCTGGTCAGATTCACTGTGCAAGGCTTGAACAACTCATGCGA  150
       |||||| ||| ||||||||||||||||||||| ||||||||||||||||
seq2  AAGCTCTTTCT-GTCAGATTCACTGTGCAAGGC-TGAACAACTCATGCGA  138

seq1  CCTCCCTGGGGCATAG-AGCCGGGAGGCTTGCCACACAGCTCAGCTAAGA  199
       || |||| ||||||| ||| |||||||||||||||||||||||||||||
seq2  -CTTCCTGAGGCATAGAAGCAGGGAGGCTTGCCACACAGCTCAGCTAAGA  187

seq1  TTTGAAATGATCACTCTTGAGTCCCAGCCTGAGGTGAGGAAAGTGAACCA  249
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -TTGAAATGATCACTCTTGAGT-CCAGCCTGAGGTGAGGAAAGTGAACCA  235

seq1  TGGTCCAGGATCCTCCAGCCGGGGTGTGTGTGTGTGTGTGTGTGTGTGTG  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGGAT-CTCCAGCCGGGGTGTGTGTGTGTGTGTGTGTGTGTGTG  284

seq1  TGCGTAAGGCCAATGACCCTGGATGCCCCAGCTTCAGCATCATCGTTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAAGGCCAATGACCCTGGATGCCCCAGCTTCAGCATCATCGTTGCA  334

seq1  AGGTAAAGGCATTCTTGGGTCAACTTAATAATGAACTCTTATTTACTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGGCATTCTTGGGTCAACTTAATAATGAACTCTTATTTACTCAC  384

seq1  ATGAGCCCCTCCCTTAAAAACCAAAGTCTTCCTGTCAGGAAGTAAACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCCTCCCTTAAAAACCAAAGTCTTCCTGTCAGGAAGTAAACAAA  434

seq1  ACCTTTAGCTCTCTCATGAACCCCCTCGTCCTCTCTTGTGCCCAGCGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAGCTCTCTCATGAACCCCCTCGTCCTCTCTTGTGCCCAGCGCTG  484

seq1  AATAATCCCCTAGTGCTAAGCACCCAGGACGTTTCTCTTGGCTTTTATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCCCTAGTGCTAAGCACCCAGGACGTTTCTCTTGGCTTTTATGG  534

seq1  GGGCTCAGTAAGACCCTTCCTTTTCCAACTACATGCCTGAATTTTATGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGTAAGACCCTTCCTTTTCCAACTACATGCCTGAATTTTATGTT  584

seq1  TGCTTTTAATTATCAGACCTCCACCCTCTGTTACAGCAGGTATATCTCGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAATTATCAGACCTCCACCCTCTGTTACAGCAGGTATATCTCGG  634

seq1  GTGAGCATTGCCAGGAACTGCTTTTGCTTCTAATTTTCTGAGTGGTGCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATTGCCAGGAACTGCTTTTGCTTCTAATTTTCTGAGTGGTGCCC  684

seq1  ACACCTGGCATGATCAGAGTCCAGAAATGTCAGGCCAGGAAGTAGAGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCATGATCAGAGTCCAGAAATGTCAGGCCAGGAAGTAGAGCTC  734

seq1  CTCCTGCCTGCTGACTGAGAGGCCTAGATGCTAGACAACGGACGAGCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTGCTGACTGAGAGGCCTAGATGCTAGACAACGGACGAGCTTT  784

seq1  GCAGGGTACCACCTGAACATGACTAGGCTCTAACAAGGAAGGGGCAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTACCACCTGAACATGACTAGGCTCTAACAAGGAAGGGGCAAGAA  834

seq1  CTTGGAGCTTTGCAAGGAGAGAAACCATATTGATGGATGGAGGATGGGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCTTTGCAAGGAGAGAAACCATATTGATGGATGGAGGATGGGCA  884

seq1  AACAGTCTATGAATTCACATTTTTTGTTTGTTTTTTTGTTTTTTGTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTATGAATTCACATTTTTTGTTTGTTTTTTTGTTTTTTGTTTTT  934

seq1  TCGAGACAGGGTTTTTCTGCATATCCCTGGCTGTCCCGGAACTCACTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGACAGGGTTTTTCTGCATATCCCTGGCTGTCCCGGAACTCACTCTC  984

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGACTGTCTCTGCTTTCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGACTGTCTCTGCTTTCTGA  1034

seq1  GTGCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCTGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCATGCGCCACCACTGCCCGGCTGAATTC  1078