BAC Information

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BAC

Clone NameB6Ng01-125K18
Chromosome8 (Build37)
Map Location 82,080,196 - 82,228,076
singlet/doubletdoublet
Overlap geneOtud4, Tpd52-ps, Abce1
Upstream geneSlc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik, 1700011L22Rik, Mmaa, A630049P17, Smad1, LOC666378, LOC666388, LOC666392
Downstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3, Smarca5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K18.bB6Ng01-125K18.g
ACCDH928243DH928244
length8111,092
definitionDH928243|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K18, 5' end.DH928244|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,080,196 - 82,081,006)(82,226,968 - 82,228,076)
sequence
gaattcattcagggttgaaaatatgatttaaacctagccactcagaggcc
tgctccaggatttttaaaaagttgaaactgactgaaagaaaacacttttc
ctatagagatgaagaaatttggggtcaaaagaaaactatttttctccatg
aagaacaggatttttctcactataaaatcaaaatcaaatgcctacgaaag
cagaagtgagggctggaagactgtacacagagggctgtgccaggttccag
ccttgggtctgggagactgctacggtcctaaaaaccatccttcagttttc
tgagactttaactacattagagtgagcttcttttgtgtaaacaaaatggc
ccttattatacactgtacagagcaaaccagcctccccaggaagagggggc
gcataggacaagctagtctttcaattgatataagaacattctgtatacgt
ggtctggaagttctttggccaacagaatgaccctgtccatagccacagag
gactttacggaagtgggtttctagcccgtcacaaaccaaaaatgtttata
ctcggccagttgttgaatagagctttagtggaacccccgtcccttctgag
aggcccaccagctcctatatattgaaccagttacaaatgtcacttatctt
tggacttaattatgatggatttatgatataacttcatattagcaacctga
ggttcatgaagcaaaatgctgatggagcaaaccaagaagtcaaagcaggt
cttatccaagtgatgaagctgatgaaactgtggtggtggcttggggtggt
gtggttgggga
gaattcatctactgagcagagctgtcatctgatcttgtcctttctggtca
tgcctatcattgtctattctttatagagatacttttctagccacattact
gttgcctttttttttctttaacgtgcatgtgtgcatgggtagatatgtgt
atgaaggccagaagtcacaaaccaggtgtcttgttcattcattcttgttt
tattttgtttgttgagacggggtttttctgtgtagccttggctgtcctgg
aactcactctgtagactaagctgtcctcaaacacttataaatccaactgt
ctctgcctcccaagaactgggactaaaggtactcaaccctttcctttttt
taaaaagagggtctctcactaatcttgattattgacttcccagcaagccc
tatggatccccctgtttctacctccagctttgaaattttaggaacacact
gccataccaggcttttcacatgagtgttggggatccatctaagctcaata
ttacacacctgagccgtcaccccagccttcaggctcccactgttcttagt
gacatccttatacttggccattcttgttctggggacatttgtctgatagt
caaatactacaatgagtaagttctgttgatgttttctttttcgatattta
ttttatttttagccttgaaacattcttaagttagaaggatgagttataac
agaaaaataataaactttgattcaatatataggctatctattggcaagat
agatataaccctctcccccaaataataaaatcaagacaccttaaaagact
ttatctttaggaaagaagcaaacaaggacaggagtaatttaagggaaaaa
aaaaaaaacatctgctatagacaatattggaaactatggaacagtgttta
gttgtatcaatcataaagattataaatttgtgtatacagctattatcttc
aggacttgattatttagtaaattattctaatattgtaatttatgcttgaa
agattcataaattgtaatcatcatcataattaatggtgattgtccttata
gtcttaatacagaaatgtccttggcgccttataattgtcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_82080196_82081006
seq2: B6Ng01-125K18.b_46_856

seq1  GAATTCATTCAGGGTTGAAAATATGATTTAAACCTAGCCACTCAGAGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGGGTTGAAAATATGATTTAAACCTAGCCACTCAGAGGCC  50

seq1  TGCTCCAGGATTTTTAAAAAGTTGAAACTGACTGAAAGAAAACACTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGATTTTTAAAAAGTTGAAACTGACTGAAAGAAAACACTTTTC  100

seq1  CTATAGAGATGAAGAAATTTGGGGTCAAAAGAAAACTATTTTTCTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGATGAAGAAATTTGGGGTCAAAAGAAAACTATTTTTCTCCATG  150

seq1  AAGAACAGGATTTTTCTCACTATAAAATCAAAATCAAATGCCTACGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGATTTTTCTCACTATAAAATCAAAATCAAATGCCTACGAAAG  200

seq1  CAGAAGTGAGGGCTGGAAGACTGTACACAGAGGGCTGTGCCAGGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGAGGGCTGGAAGACTGTACACAGAGGGCTGTGCCAGGTTCCAG  250

seq1  CCTTGGGTCTGGGAGACTGCTACGGTCCTAAAAACCATCCTTCAGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTCTGGGAGACTGCTACGGTCCTAAAAACCATCCTTCAGTTTTC  300

seq1  TGAGACTTTAACTACATTAGAGTGAGCTTCTTTTGTGTAAACAAAATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTTAACTACATTAGAGTGAGCTTCTTTTGTGTAAACAAAATGGC  350

seq1  CCTTATTATACACTGTACAGAGCAAACCAGCCTCCCCAGGAAGAGGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTATACACTGTACAGAGCAAACCAGCCTCCCCAGGAAGAGGGGGC  400

seq1  GCATAGGACAAGCTAGTCTTTCAATTGATATAAGAACATTCTGTATACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGACAAGCTAGTCTTTCAATTGATATAAGAACATTCTGTATACGT  450

seq1  GGTCTGGAAGTTCTTTGGCCAACAGAATGACCCTGTCCATAGCCACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAAGTTCTTTGGCCAACAGAATGACCCTGTCCATAGCCACAGAG  500

seq1  GACTTTACGGAAGTGGGTTTCTAGCCCGTCACAAACCAAAAATGTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACGGAAGTGGGTTTCTAGCCCGTCACAAACCAAAAATGTTTATA  550

seq1  CTCGGCCAGTTGTTGAATAGAGCTTTAGTGGAACCCCCGTCCCTTCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCAGTTGTTGAATAGAGCTTTAGTGGAACCCCCGTCCCTTCTGAG  600

seq1  AGGCCCACCAGCTCCTATATATTGAACCAGTTACAAATGTCACTTATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACCAGCTCCTATATATTGAACCAGTTACAAATGTCACTTATCTT  650

seq1  TGGACTTAATTATGATGGATTTATGATATAACTTCATATTAGCAACCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTAATTATGATGGATTTATGATATAACTTCATATTAGCAACCTGA  700

seq1  GGTTCATGAAGCAAAATGCTGATGGAGCAAACCAAGAAGTCAAAGCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGAAGCAAAATGCTGATGGAGCAAACCAAGAAGTCAAAGCAGGT  750

seq1  CTTATCCAAGTGATGAAGCTGATGAAACTGTGGTGGTGGCTTGGGGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCAAGTGATGAAGCTGATGAAACTGTGGTGGTGGCTTGGGGTGGT  800

seq1  GTGGTTGGTGA  811
      |||||||| ||
seq2  GTGGTTGGGGA  811

seq1: chr8_82226968_82228076
seq2: B6Ng01-125K18.g_65_1156 (reverse)

seq1  ATTGACAATTGATAAGGCGCCAAAGGGACATTTCTGTTATTTAAA--ATA  48
      |||||||||| ||||||||||||  ||||||||||| |||| | |  |||
seq2  ATTGACAATT-ATAAGGCGCCAA--GGACATTTCTG-TATTAAGACTATA  46

seq1  A--AGAATCACATATTAATTTATGATAGATGAATTAACAATATTATTGAA  96
      |  | ||||||  ||||| ||||||| |||||  | ||||| ||||   |
seq2  AGGACAATCAC-CATTAA-TTATGAT-GATGA--TTACAAT-TTAT--GA  88

seq1  ATCTTTCAAGCATAAAATTTACAAATATTAGAAATAATTTACTTAAATAA  146
      ||||||||||||||||  |||| |||||||| |||||||||| |||||||
seq2  ATCTTTCAAGCATAAA--TTAC-AATATTAG-AATAATTTAC-TAAATAA  133

seq1  TCAAGTTCCTTGAAGATAATAGCTGTATACACAAATTTAATAATCTTTAT  196
      ||||||  | |||||||||||||||||||||||||||| |||||||||||
seq2  TCAAGT--CCTGAAGATAATAGCTGTATACACAAATTT-ATAATCTTTAT  180

seq1  GATTGATACAACTTAAACACTGTTCAATAGTTTCCATAATTTGTCTATAG  246
      |||||||||||| |||||||||||| |||||||||| |  ||||||||||
seq2  GATTGATACAAC-TAAACACTGTTCCATAGTTTCCA-ATATTGTCTATAG  228

seq1  CAGATGTTTTTTTTTTTTTCCCTTAAATTACTCCTGTCCTTGTTTGCTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTTTTTTTTTTTTCCCTTAAATTACTCCTGTCCTTGTTTGCTTC  278

seq1  TTTCCTAAAGATAAAGTCTTTTAAGGTGTCTTGATTTTATTATTTGGGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAAAGATAAAGTCTTTTAAGGTGTCTTGATTTTATTATTTGGGGG  328

seq1  AGAGGGTTATATCTATCCTGCCAATAGATAGCCTATATATTGAATCAAAG  396
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGGGTTATATCTATCTTGCCAATAGATAGCCTATATATTGAATCAAAG  378

seq1  TTTATTATTTTTCTGTTATAACTCATCCTTCTAACTTAAGAATGTTTCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTTTCTGTTATAACTCATCCTTCTAACTTAAGAATGTTTCAA  428

seq1  GGCTAAAAAT-AAATTAATATCGAAAAAGAAAACATCAACAGAACTTACT  495
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAATAAAATAAATATCGAAAAAGAAAACATCAACAGAACTTACT  478

seq1  CATTGTAGTATTTGACTATCAGACAAATGTCCCCAGAACAAGAATGGCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAGTATTTGACTATCAGACAAATGTCCCCAGAACAAGAATGGCCA  528

seq1  AGTATAAGGATGTCACTAAGAACAGTGGGAGCCTGAAGGCTGGGGTGACG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGGATGTCACTAAGAACAGTGGGAGCCTGAAGGCTGGGGTGACG  578

seq1  GCTCAGGTGTGTAATATTGAGCTTAGATGGATCCCCAACACTCATGTGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGTGTGTAATATTGAGCTTAGATGGATCCCCAACACTCATGTGAA  628

seq1  AAGCCTGGTATGGCAGTGTGTTCCTAAAATTTCAAAGCTGGAGGTAGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGTATGGCAGTGTGTTCCTAAAATTTCAAAGCTGGAGGTAGAAA  678

seq1  CAGGGGGATCCATAGGGCTTGCTGGGAAGTCAATAATCAAGATTAGTGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGATCCATAGGGCTTGCTGGGAAGTCAATAATCAAGATTAGTGAG  728

seq1  AGACCCTCTTTTTAAAAAAAGGAAAGGGTTGAGTACCTTTAGTCCCAGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCTTTTTAAAAAAAGGAAAGGGTTGAGTACCTTTAGTCCCAGTT  778

seq1  CTTGGGAGGCAGAGACAGTTGGATTTATAAGTGTTTGAGGACAGCTTAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGAGACAGTTGGATTTATAAGTGTTTGAGGACAGCTTAGT  828

seq1  CTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAAAAACCCCGTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAAAAACCCCGTCT  878

seq1  CAACAAACAAAATAAAACAAGAATGAATGAACAAGACACCTGGTTTGTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAAATAAAACAAGAATGAATGAACAAGACACCTGGTTTGTGA  928

seq1  CTTCTGGCCTTCATACACATATCTACCCATGCACACATGCACGTTAAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCCTTCATACACATATCTACCCATGCACACATGCACGTTAAAGA  978

seq1  AAAAAAAAGGCAACAGTAATGTGGCTAGAAAAGTATCTCTATAAAGAATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGCAACAGTAATGTGGCTAGAAAAGTATCTCTATAAAGAATA  1028

seq1  GACAATGATAGGCATGACCAGAAAGGACAAGATCAGATGACAGCTCTGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGATAGGCATGACCAGAAAGGACAAGATCAGATGACAGCTCTGCT  1078

seq1  CAGTAGATGAATTC  1109
      ||||||||||||||
seq2  CAGTAGATGAATTC  1092