BAC Information

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BAC

Clone NameB6Ng01-126D21
Chromosome8 (Build37)
Map Location 105,688,912 - 105,797,056
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh11, EG667618, LOC100041368
Downstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126D21.bB6Ng01-126D21.g
ACCDH928665DH928666
length1,035562
definitionDH928665|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D21, 5' end.DH928666|Mus musculus domesticus DNA, BAC clone: B6Ng01-126D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,688,912 - 105,690,371)(105,796,495 - 105,797,056)
sequence
gaattctctgcacatagactatcaactcttctcaagaaatgttatctgta
gctgtccagcagccatggagaactgggtacctgaaagggaggctggaaat
gaaaagggaagggcaggagagagaaggatgaagccaaaacaaaggtttct
gatcaaggctcaaagtttaatattcagttctgcgtttataaagggaaaaa
ccccagacccatcctttgtttcagctggattatgttccaaaggaagctca
gtaggcagtctgctcccgtaggaaattgcaggtggagcaaggtagaagac
ctccacctaggtcagaagactccaccctaggtcagctaggtctgcggaag
accaactgtagcaaacaattaaggtctgtttagcctgctcaaggctgggg
gaagggcacagttatcgccatgtgactaagagcctttgttgtcagcttca
cttttatagtatatagcttctggcatacattgaatgatcaaggaacaaag
accacatgtggaatcaatgaataaactcaaaggctgaagccagaaacctc
agaggagtcttgagtgttccctagccccagtcccatactcaactcatgat
ttcttcttttgaaaacatatctacaattctctgcatctagttccttttac
tgcctacccacctctccaatcctccatctcttttgccaggaaaaattcaa
caatctcctgtcaactctcccttgtcttaccccttggaatgcgttctcca
ccaatcagcaagattgatgatcttagagcccaatcagaccagttcattct
gctgtttaactccaaagttttccagctgtttcaactccttatcgtggtcc
tcaatcacctgctttagctgccactttctatttcctccccattttctact
catgccacagccctttcctcccattagtcatgaagcgatcacatttctct
gtttcccgttgctaatgttttctctttgttcaagccccttcccatgtcca
gggcgtttcaatgctgttctgctgcccagactcat
gggaacaagtgagtatcttcccagattttgttgaatttaggagattaaaa
atggcagaatctctcccccagacctctgcaggccatcccacagattggct
gcagaagggagcctggagagaggcaattaatcgcagatcactaacagctc
aatgcaaaggcctgtgtccaggaattccccctgccagaggtcctctgagc
atttgctgcagagaaacgagtttgcaaataagcacttttctttgtgaaac
ctcttttcccaagctctgtgagttcccagctctgctttcagcggtgaggg
ctgtcttttcatcttgaactttacatattcttctagtttagctctgtcac
acagagccctttggcaagcaagccactctctctcccactgtgaatggttg
ggtactgcgagggagaatgaagttttgagtcagccaactttccctctcca
ggacattctcactccgcctctctttgtgttcaacaatggagtcaaagagg
agaacaaaagttccagacactctgagcaattgagagagagggagagaggg
agggagggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105688912_105690371
seq2: B6Ng01-126D21.b_48_1079

seq1  GAATTCTCTGCACATAGACTATCAACTCTTCTCAAGAAATGTTATCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCACATAGACTATCAACTCTTCTCAAGAAATGTTATCTGTA  50

seq1  GCTGTCCAGCAGCCATGGAGAACTGGGTACCTGAAAGGGAGGCTGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGCAGCCATGGAGAACTGGGTACCTGAAAGGGAGGCTGGAAAT  100

seq1  GAAAAGGGAAGGGCAGGAGAGAGAAGGATGAAGCCAAAACAAAGGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAAGGGCAGGAGAGAGAAGGATGAAGCCAAAACAAAGGTTTCT  150

seq1  GATCAAGGCTCAAAGTTTAATATTCAGTTCTGCGTTTATAAAGGGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGCTCAAAGTTTAATATTCAGTTCTGCGTTTATAAAGGGAAAAA  200

seq1  CCCCAGACCCATCCTTTGTTTCAGCTGGATTATGTTCCAAAGGAAGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACCCATCCTTTGTTTCAGCTGGATTATGTTCCAAAGGAAGCTCA  250

seq1  GTAGGCAGTCTGCTCCCGTAGGAAATTGCAGGTGGAGCAAGGTAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGTCTGCTCCCGTAGGAAATTGCAGGTGGAGCAAGGTAGAAGAC  300

seq1  CTCCACCTAGGTCAGAAGACTCCACCCTAGGTCAGCTAGGTCTGCGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTAGGTCAGAAGACTCCACCCTAGGTCAGCTAGGTCTGCGGAAG  350

seq1  ACCAACTGTAGCAAACAATTAAGGTCTGTTTAGCCTGCTCAAGGCTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTGTAGCAAACAATTAAGGTCTGTTTAGCCTGCTCAAGGCTGGGG  400

seq1  GAAGGGCACAGTTATCGCCATGTGACTAAGAGCCTTTGTTGTCAGCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCACAGTTATCGCCATGTGACTAAGAGCCTTTGTTGTCAGCTTCA  450

seq1  CTTTTATAGTATATAGCTTCTGGCATACATTGAATGATCAAGGAACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAGTATATAGCTTCTGGCATACATTGAATGATCAAGGAACAAAG  500

seq1  ACCACATGTGGAATCAATGAATAAACTCAAAGGCTGAAGCCAGAAACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGTGGAATCAATGAATAAACTCAAAGGCTGAAGCCAGAAACCTC  550

seq1  AGAGGAGTCTTGAGTGTTCCCTAGCCCCAGTCCCATACTCAACTCATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTCTTGAGTGTTCCCTAGCCCCAGTCCCATACTCAACTCATGAT  600

seq1  TTCTTCTTTTGAAAACATATCTACAATTCTCTGCATCTAGTTCCTTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTTGAAAACATATCTACAATTCTCTGCATCTAGTTCCTTTTAC  650

seq1  TGCCTACCCACCTCTCCAATCCTCCATCTCTTTTGCCAGGAAAAATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACCCACCTCTCCAATCCTCCATCTCTTTTGCCAGGAAAAATTCAA  700

seq1  CAATCTCCTGTCAACTCTCCCTTGTCTTACCCCTTGGAATGCGTTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCTGTCAACTCTCCCTTGTCTTACCCCTTGGAATGCGTTCTCCA  750

seq1  CCAATCAGCAAGATTGATGATCTTAGAGCCCAATCAGACCAGTTCATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGCAAGATTGATGATCTTAGAGCCCAATCAGACCAGTTCATTCT  800

seq1  GCTGTTTAACTCCAAAGTTTTCCAGCTGTTTCAACTCCTTATCGTGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTAACTCCAAAGTTTTCCAGCTGTTTCAACTCCTTATCGTGGTCC  850

seq1  TCAATCACCTGCTTTAGCTGCCACTTTCTATTTCCTCCCCATTTTCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCACCTGCTTTAGCTGCCACTTTCTATTTCCTCCCCATTTTCTACT  900

seq1  CATGCCACAGCCC-TTCCTCCCATTAGTCATGAAGCGATCACATTTCTCT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAGCCCTTTCCTCCCATTAGTCATGAAGCGATCACATTTCTCT  950

seq1  GTTTCCCGTTGGCTATGTTTCTTCTTTGTTCAAGCCCCTTCCCATGTCCA  999
      |||||||||||   ||||||  ||||||||||||||||||||||||||||
seq2  GTTTCCCGTTGCTAATGTTTTCTCTTTGTTCAAGCCCCTTCCCATGTCCA  1000

seq1  GGGCCGTTTCAATGCTGTTCTTGCTGCCCAGAACTCATTTACTTTCTTCA  1049
      ||| |||||||||||||||| |||||||||| |||               
seq2  GGG-CGTTTCAATGCTGTTC-TGCTGCCCAG-ACT---------------  1032

seq1  CTCATTTCAGACTAAAACCAAAAATGTCTTCAAGGAGAACTCCTGCCACG  1099
                                                        
seq2  --------------------------------------------------  1032

seq1  AATTGAAGATGTCCCTGATATTGTCAAGATGGCTCTGTTTCTTTGTTTTA  1149
                                                        
seq2  --------------------------------------------------  1032

seq1  TATAGGACTTCTAATAACTTTGAAGAAGATATAGGCATGTCTTTAAAATT  1199
                                                        
seq2  --------------------------------------------------  1032

seq1  GTTACTGCATTCATTTATGCATTTGTGGGGTTGGGTGTTGCACATCTATT  1249
                                                        
seq2  --------------------------------------------------  1032

seq1  TACTAAAAGAATAAATGAATTCAGAGAATTAGTCAAGAATAGAGTGTCCC  1299
                                                        
seq2  --------------------------------------------------  1032

seq1  AGCATCAAGTTAGAAGATACCAAAGAAAGTAATTATAAAAATAATACCCA  1349
                                                        
seq2  --------------------------------------------------  1032

seq1  ATGGTGCAAGCCTATCCTGAGAAGAGTATCCGAAAAGCCTAGTGAAGGAA  1399
                                                        
seq2  --------------------------------------------------  1032

seq1  GGAGTTGGTAGAGAGGGCATTATGAGGCCCTCAGGAACTGCTAGAAATTA  1449
                                                        
seq2  --------------------------------------------------  1032

seq1  GTGCCCAGACT  1460
                 
seq2  -----------  1032

seq1: chr8_105796495_105797056
seq2: B6Ng01-126D21.g_76_637 (reverse)

seq1  CCTTCCCTCCCTCCCTCTCTCCCTCTCTCTCAATTGCTCAGAGTGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTCCCTCCCTCTCTCCCTCTCTCTCAATTGCTCAGAGTGTCTGG  50

seq1  AACTTTTGTTCTCCTCTTTGACTCCATTGTTGAACACAAAGAGAGGCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGTTCTCCTCTTTGACTCCATTGTTGAACACAAAGAGAGGCGGA  100

seq1  GTGAGAATGTCCTGGAGAGGGAAAGTTGGCTGACTCAAAACTTCATTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATGTCCTGGAGAGGGAAAGTTGGCTGACTCAAAACTTCATTCTC  150

seq1  CCTCGCAGTACCCAACCATTCACAGTGGGAGAGAGAGTGGCTTGCTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCAGTACCCAACCATTCACAGTGGGAGAGAGAGTGGCTTGCTTGCC  200

seq1  AAAGGGCTCTGTGTGACAGAGCTAAACTAGAAGAATATGTAAAGTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTCTGTGTGACAGAGCTAAACTAGAAGAATATGTAAAGTTCAAG  250

seq1  ATGAAAAGACAGCCCTCACCGCTGAAAGCAGAGCTGGGAACTCACAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGACAGCCCTCACCGCTGAAAGCAGAGCTGGGAACTCACAGAGC  300

seq1  TTGGGAAAAGAGGTTTCACAAAGAAAAGTGCTTATTTGCAAACTCGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAAGAGGTTTCACAAAGAAAAGTGCTTATTTGCAAACTCGTTTC  350

seq1  TCTGCAGCAAATGCTCAGAGGACCTCTGGCAGGGGGAATTCCTGGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAAATGCTCAGAGGACCTCTGGCAGGGGGAATTCCTGGACACA  400

seq1  GGCCTTTGCATTGAGCTGTTAGTGATCTGCGATTAATTGCCTCTCTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGCATTGAGCTGTTAGTGATCTGCGATTAATTGCCTCTCTCCAG  450

seq1  GCTCCCTTCTGCAGCCAATCTGTGGGATGGCCTGCAGAGGTCTGGGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTCTGCAGCCAATCTGTGGGATGGCCTGCAGAGGTCTGGGGGAG  500

seq1  AGATTCTGCCATTTTTAATCTCCTAAATTCAACAAAATCTGGGAAGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCCATTTTTAATCTCCTAAATTCAACAAAATCTGGGAAGATAC  550

seq1  TCACTTGTTCCC  562
      ||||||||||||
seq2  TCACTTGTTCCC  562