BAC Information

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BAC

Clone NameB6Ng01-126H20
Chromosome8 (Build37)
Map Location 108,044,268 - 108,215,868
singlet/doubletdoublet
Overlap geneHsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik
Upstream geneAppbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837
Downstream geneAcd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126H20.bB6Ng01-126H20.g
ACCDH928848DH928849
length1,228997
definitionDH928848|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H20, 5' end.DH928849|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,214,631 - 108,215,868)(108,044,268 - 108,045,260)
sequence
gaattccaagacggcaaggattacacagagaaaccctgtctcaaatcaat
caatcaatcaatcaatcaatcaatcaaggcttgggctgggcagtgttggc
acatgcctttaatcctagcacttgggaggcagaagcaagcagatctctgg
gagttcaaggatatcccaggctacacagagaaaccctgtctcaagaaacc
aaaaccaaacaaaagaattgaggcttgggaatgcagaggtaagaataata
caaaaagatgggttaatgaaaggaaattaaagccagagataggactgctg
gagctagccacacagtcagtaaagagaggttagcccttaaataggaagtc
gaataaagaggctacagcaaggacagcctatttaaacccttaaagcagcc
aaatgttacacgggaagctgtttcaagaacggtgaccaagaaaaggaaat
tgtttgagacatagaactcagcactgtggctcagaaaagtcagactctga
ctcaggtgctcaggtattcaagattagggcaaggggcactaacctgctct
gagtggtctgaaatcagacctaagggctgaaggcagggcttgaggtccga
agtagagtctacttggttgttcctccagagacaggcttggatctgcagtc
aaagagatagtgagaaacgccaggggggtggagtcaccacacacaaaagg
gcagagagaagcgcggacccccacctgatggaccgctcgagttgtgagtt
ctggccggctgcgatgagcctgggttacgtcattcagtggcagcggcatg
gacttgaggctgtggttctgttccagggcttgcgccacatccagcaggcc
cagagcagatgtgttgttccggtcccagatcacagacctgggccccacca
ggcttcagcaggggcagaaccccgcccaaccctctggccttattcaatca
cctgtctcatcaacatgtataccttaaacccatacacccgtctattatat
actctgccctctctgcgggtcccagcccttatcatgatcatacccacgta
gcctggtgttgacgcgtagaagccttgctagcatctgggccagcaatccc
ttatggcattgccactgaatccagcgctgtcaggttaagaatggtgccca
agcccggaatcagaatgctggaacctgctcaaccggaactaatcacgata
ggactgtagaggcttgggttaaaaggaa
gaattcccttgaaatgaagcagggactcgttataggctctgccttcaaac
atggaacagatctcttcctgtcctgtgtgagcggctttcaccagatccta
tgccacttcaggttctactgatacagctggggcatcctgagatctcacct
caggtctttgctactggtctagtcttgagcctgagcaagaggtgagaaga
gggatgctttctgtgccccaggctccttccatctctgcaaacctcagtgt
ttgggagaagagaatttggccccagcctactcccgtgtaagcactggaag
ttggcttctagcttcctgatgcctgaaaactctggggttttccgagtcac
caccaagcagcaagagcacttaagtgaccggttcttgacccacctgccaa
gaacactgcgctttctgcctacactcatccctccccaagaatgcccaaga
attgtttgtcaaacctaggccacaagctcagccatgctgtcatgtctggg
ctgtgtgacttggtaccttgtgtgcatgcattatgtatgtgtcttcgtgc
tgaagggagacaggggtcaagctcgtgtgtgaacatgcaggcaggtttac
aggtgagcaagagggtaaggaccccggagctgagtttctgggaggctttt
agtaaagttctgtctcctccaaaaggaagcagaagcaagagtgcatgtgt
gtgcacacacactcccttcccccagtcagatttgcttgggaaggacccct
caacacagactagcaggcccagctacaccaagcccggtttgcagccccaa
ccagcttttgttctctttctcaggctcagggggagggctgaaacgaagga
ggggtgcctgttgtccaggaattggggaagcttgggctgccaagtcagct
tttctggccaaggcaggaccctcgggctggagctccaagactcccttccc
catgtgcctcctctaatccttctactgggccaccccagagtccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_108214631_108215868
seq2: B6Ng01-126H20.b_48_1275 (reverse)

seq1  TTCCTTTTAACCCCAGCCTTTGCAGTCACTATCCGTGGCTGAGTCGCGGT  50
      ||||||||||||| ||||| | ||||| |||| ||| | | |||  ||||
seq2  TTCCTTTTAACCCAAGCCTCTACAGTC-CTAT-CGT-GATTAGTTCCGGT  47

seq1  TGAAGCAGGGTGCCAGCATCCTGA-TCCGGGCTTTGGGCACCAATCCTAA  99
      || |||| ||| ||||||| |||| ||||||| |||||||||| || |||
seq2  TG-AGCA-GGTTCCAGCATTCTGATTCCGGGC-TTGGGCACCATTCTTAA  94

seq1  ACTGACAGCGCTGGATATCAGTGGCAATGCCATAGGGGA-TGCTGGGGCC  148
       ||||||||||||||| ||||||||||||||||| |||| ||||  ||||
seq2  CCTGACAGCGCTGGAT-TCAGTGGCAATGCCATAAGGGATTGCT--GGCC  141

seq1  AAGATGCTAGCCAAGGC-TCTACGCGTCAACACCAGGCTACGGTGGGTAT  197
       ||||||||| |||||| ||||||||||||||||||||||| ||||||||
seq2  CAGATGCTAG-CAAGGCTTCTACGCGTCAACACCAGGCTAC-GTGGGTAT  189

seq1  GATCATGATAAGGGCTGGGACCCGCAGGAGAGGGCAAGAGTTATATAATA  247
      |||||||||||||||||||||||||| |||||||| |||| |||||||||
seq2  GATCATGATAAGGGCTGGGACCCGCA-GAGAGGGC-AGAG-TATATAATA  236

seq1  GACGGGTGTATGGGTTTAAGGTATACATGGTGATGAGACAGGTGATTGGA  297
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GACGGGTGTATGGGTTTAAGGTATACATGTTGATGAGACAGGTGATTGAA  286

seq1  TAAGGCCAGAGGGTTGGGCGGGGTTCTGCCCCTGCTGAAGCCTGGTGGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCAGAGGGTTGGGCGGGGTTCTGCCCCTGCTGAAGCCTGGTGGGG  336

seq1  CCCAGGTCTGTGATCTGGGACCGGAACAACACATCTGCTCTGGGCCTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCTGTGATCTGGGACCGGAACAACACATCTGCTCTGGGCCTGCT  386

seq1  GGATGTGGCGCAAGCCCTGGAACAGAACCACAGCCTCAAGTCCATGCCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGCGCAAGCCCTGGAACAGAACCACAGCCTCAAGTCCATGCCGC  436

seq1  TGCCACTGAATGACGTAACCCAGGCTCATCGCAGCCGGCCAGAACTCACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGAATGACGTAACCCAGGCTCATCGCAGCCGGCCAGAACTCACA  486

seq1  ACTCGAGCGGTCCATCAGGTGGGGGTCCGCGCTTCTCTCTGCCCTTTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGAGCGGTCCATCAGGTGGGGGTCCGCGCTTCTCTCTGCCCTTTTGT  536

seq1  GTGTGGTGACTCCA-CCCCCTGGCGTTTCTCACTATCTCTTTGACTGCAG  596
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGACTCCACCCCCCTGGCGTTTCTCACTATCTCTTTGACTGCAG  586

seq1  ATCCAAGCCTGTCTCTGGAGGAACAACCAAGTAGACTCTACTTCGGACCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCCTGTCTCTGGAGGAACAACCAAGTAGACTCTACTTCGGACCT  636

seq1  CAAGCCCTGCCTTCAGCCCTTAGGTCTGATTTCAGACCACTCAGAGCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTGCCTTCAGCCCTTAGGTCTGATTTCAGACCACTCAGAGCAGG  686

seq1  TTAGTGCCCCTTGCCCTAATCTTGAATACCTGAGCACCTGAGTCAGAGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCCCCTTGCCCTAATCTTGAATACCTGAGCACCTGAGTCAGAGTC  736

seq1  TGACTTTTCTGAGCCACAGTGCTGAGTTCTATGTCTCAAACAATTTCCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTCTGAGCCACAGTGCTGAGTTCTATGTCTCAAACAATTTCCTT  786

seq1  TTCTTGGTCACCGTTCTTGAAACAGCTTCCCGTGTAACATTTGGCTGCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCACCGTTCTTGAAACAGCTTCCCGTGTAACATTTGGCTGCTT  836

seq1  TAAGGGTTTAAATAGGCTGTCCTTGCTGTAGCCTCTTTATTCGACTTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTTTAAATAGGCTGTCCTTGCTGTAGCCTCTTTATTCGACTTCCT  886

seq1  ATTTAAGGGCTAACCTCTCTTTACTGACTGTGTGGCTAGCTCCAGCAGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGGCTAACCTCTCTTTACTGACTGTGTGGCTAGCTCCAGCAGTC  936

seq1  CTATCTCTGGCTTTAATTTCCTTTCATTAACCCATCTTTTTGTATTATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTGGCTTTAATTTCCTTTCATTAACCCATCTTTTTGTATTATTC  986

seq1  TTACCTCTGCATTCCCAAGCCTCAATTCTTTTGTTTGGTTTTGGTTTCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTGCATTCCCAAGCCTCAATTCTTTTGTTTGGTTTTGGTTTCTT  1036

seq1  GAGACAGGGTTTCTCTGTGTAGCCTGGGATATCCTTGAACTCCCAGAGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCTGGGATATCCTTGAACTCCCAGAGAT  1086

seq1  CTGCTTGCTTCTGCCTCCCAAGTGCTAGGATTAAAGGCATGTGCCAACAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTTCTGCCTCCCAAGTGCTAGGATTAAAGGCATGTGCCAACAC  1136

seq1  TGCCCAGCCCAAGCCTTGATTGATTGATTGATTGATTGATTGATTGATTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCCCAAGCCTTGATTGATTGATTGATTGATTGATTGATTGATTT  1186

seq1  GAGACAGGGTTTCTCTGTGTAATCCTTGCCGTCTTGGAATTC  1238
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAATCCTTGCCGTCTTGGAATTC  1228

seq1: chr8_108044268_108045260
seq2: B6Ng01-126H20.g_67_1063

seq1  GAATTCCCTTGAAATGAAGCAGGGACTCGTTATAGGCTCTGCCTTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTGAAATGAAGCAGGGACTCGTTATAGGCTCTGCCTTCAAAC  50

seq1  ATGGAACAGATCTCTTCCTGTCCTGTGTGAGCGGCTTTCACCAGATCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAGATCTCTTCCTGTCCTGTGTGAGCGGCTTTCACCAGATCCTA  100

seq1  TGCCACTTCAGGTTCTACTGATACAGCTGGGGCATCCTGAGATCTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTCAGGTTCTACTGATACAGCTGGGGCATCCTGAGATCTCACCT  150

seq1  CAGGTCTTTGCTACTGGTCTAGTCTTGAGCCTGAGCAAGAGGTGAGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTGCTACTGGTCTAGTCTTGAGCCTGAGCAAGAGGTGAGAAGA  200

seq1  GGGATGCTTTCTGTGCCCCAGGCTCCTTCCATCTCTGCAAACCTCAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTTTCTGTGCCCCAGGCTCCTTCCATCTCTGCAAACCTCAGTGT  250

seq1  TTGGGAGAAGAGAATTTGGCCCCAGCCTACTCCCGTGTAAGCACTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAAGAGAATTTGGCCCCAGCCTACTCCCGTGTAAGCACTGGAAG  300

seq1  TTGGCTTCTAGCTTCCTGATGCCTGAAAACTCTGGGGTTTTCCGAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCTAGCTTCCTGATGCCTGAAAACTCTGGGGTTTTCCGAGTCAC  350

seq1  CACCAAGCAGCAAGAGCACTTAAGTGACCGGTTCTTGACCCACCTGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCAGCAAGAGCACTTAAGTGACCGGTTCTTGACCCACCTGCCAA  400

seq1  GAACACTGCGCTTTCTGCCTACACTCATCCCTCCCCAAGAATGCCCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGCGCTTTCTGCCTACACTCATCCCTCCCCAAGAATGCCCAAGA  450

seq1  ATTGTTTGTCAAACCTAGGCCACAAGCTCAGCCATGCTGTCATGTCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTCAAACCTAGGCCACAAGCTCAGCCATGCTGTCATGTCTGGG  500

seq1  CTGTGTGACTTGGTACCTTGTGTGCATGCATTATGTATGTGTCTTCGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGACTTGGTACCTTGTGTGCATGCATTATGTATGTGTCTTCGTGC  550

seq1  TGAAGGGAGACAGGGGTCAAGCTCGTGTGTGAACATGCAGGCAGGTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAGACAGGGGTCAAGCTCGTGTGTGAACATGCAGGCAGGTTTAC  600

seq1  AGGTGAGCAAGAGGGTAAGGACCCCGGAGCTGAGTTTCTGGGAGGCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCAAGAGGGTAAGGACCCCGGAGCTGAGTTTCTGGGAGGCTTTT  650

seq1  AGTAAAGTTCTGTCTCCTCCAAAAGGAAGCAGAAGCAAGAGTGCATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTTCTGTCTCCTCCAAAAGGAAGCAGAAGCAAGAGTGCATGTGT  700

seq1  GTGCACACACACTCCCTTCCCCCAGTCAGATTTGCTTGGGAAGGACCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACACTCCCTTCCCCCAGTCAGATTTGCTTGGGAAGGACCCCT  750

seq1  CAACACAGACTAGCAGGCCCCAGCTACACAAAGCCCGGTTTGCAGCCCCC  800
      ||||||||||||||||| ||||||||||| ||||||||||||||| ||||
seq2  CAACACAGACTAGCAGG-CCCAGCTACACCAAGCCCGGTTTGCAG-CCCC  798

seq1  AACCAGC-TTTGTTCTC-TTCTCA-GCTCAGGGGGGAGGGGCTGAGACG-  846
      ||||||| ||||||||| |||||| ||||||||||   ||||||| ||| 
seq2  AACCAGCTTTTGTTCTCTTTCTCAGGCTCAGGGGG--AGGGCTGAAACGA  846

seq1  AGGAGGGGTGCTGTTTGTCCAGG-AGTGGGGAAGC-TGGGCTGCAAAG-C  893
      |||||||||||   ||||||||| | ||||||||| |||||||| ||| |
seq2  AGGAGGGGTGCCTGTTGTCCAGGAATTGGGGAAGCTTGGGCTGCCAAGTC  896

seq1  AGCTTTTCTG--CACAGCAGGACCTCGGGGCTGGCAGCTCCACAGACTCC  941
      ||||||||||  ||  ||||||||   ||||||| ||||||| |||||||
seq2  AGCTTTTCTGGCCAAGGCAGGACCCTCGGGCTGG-AGCTCCA-AGACTCC  944

seq1  CCTCCCCCACTGGCCCTCCTC--ATCCTCTCACT-GGCCACCCACAGAG-  987
      | |||||   ||  |||||||  |||||   ||| |||||||| ||||| 
seq2  CTTCCCC--ATGTGCCTCCTCTAATCCTTCTACTGGGCCACCC-CAGAGT  991

seq1  CCAGGA  993
      ||||||
seq2  CCAGGA  997